prot_Ecto-sp13_S_contig13607.2853.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13607.2853.1
Unique Nameprot_Ecto-sp13_S_contig13607.2853.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length368
Homology
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: D8LNY3_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY3_ECTSI)

HSP 1 Score: 556 bits (1432), Expect = 4.680e-193
Identity = 292/362 (80.66%), Postives = 298/362 (82.32%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            MQVIQYARQLPCYLNRQFITLLGTLGVPD VIEERY AMVSTLDKV RTMLSDPAEAEMALVRYYN TSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDS  CRSV                    +   RA     A    Q           C  E      MSGGDLDGDLYSVVWDQDLL PERE V G QGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLG+IANAHLV ADLSP GARC+ECLQLAALHSKAVDFPKSGVPAVFPD L+VDSYPDFMCK+DNMTYLSKK+
Sbjct:  227 MQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSLGCRSVNH------------------YTANRASIMTNADRFGQ-----------CTQE------MSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKL 553          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: D8LC88_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC88_ECTSI)

HSP 1 Score: 563 bits (1451), Expect = 7.440e-190
Identity = 292/362 (80.66%), Postives = 300/362 (82.87%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            ++VIQYARQLPCYLNRQFITLLGTLGVPD VIEERY AMVSTLDKV RTMLSDPAEAEMALVRYYN TSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVL ATRDKAMIDLRHRTRIFVPDASCLLGIVDETG LQPGQASDS  CRSV                    +   RA     A    Q                PEPSKMSGGDLDGDLYSVVWDQDLL PERE V G QGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLG+IANAHLV ADLSPLGARC+ECLQLAALHSKAVDFPKSGVPAVFPD L+VDSYPDFMCK+DNMTYLSKK+
Sbjct:  518 LEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQASDSLGCRSVNH------------------YTANRASIMTNADRFGQCT--------------PEPSKMSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKL 847          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A061EAG0_THECC (RNA-dependent RNA polymerase n=4 Tax=Byttnerioideae TaxID=214909 RepID=A0A061EAG0_THECC)

HSP 1 Score: 245 bits (625), Expect = 2.960e-69
Identity = 150/367 (40.87%), Postives = 204/367 (55.59%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEAL-AMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+ ++++LPCYLNRQ I L+ TLGV D+V E + + +++ LD +    L DP  A  A+    +            G L   L  M+  G    +EPFL  +LR  R   ++DLR +TRIFVP+   ++G +DETG L+ GQ     S S R +S   S  + EG  V V +NP LHPG      + A D   L H+++ +VF  +G RP P++ SG DLDGDLY V WD+DL+ P                 FP M Y        S+SS    V ++E+A++F  YI ND+LG I+NAH+V+AD  P  A    C++LA L S AVDFPK+GVPA  P  LRV  YPDFM K D  TY S+ V
Sbjct:  599 LDVLSWSKRLPCYLNRQIIILMSTLGVKDSVFERKQKEVLNELDAI----LVDPERAREAMEWISH------------GELTNCLRGMLMCGYPPDSEPFLSMMLRTIRASKLLDLRTKTRIFVPNGRIMIGCLDETGTLEYGQVFVQCSVSKRGQSSADSLLVVEGK-VAVTKNPCLHPGDLR--VLKAVDAVVLHHMVDCIVFPQKGNRPHPNECSGSDLDGDLYFVCWDEDLIPP---------------CQFPPMHYG-----SASSSSLDHDVTIEEVAEYFTNYILNDSLGIISNAHIVFADKEPTKALSEPCIELAKLSSIAVDFPKTGVPAKIPHRLRVHEYPDFMDKPDKFTYESEGV 926          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VCT9_COFAR (RNA-dependent RNA polymerase n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6VCT9_COFAR)

HSP 1 Score: 243 bits (620), Expect = 1.440e-68
Identity = 145/372 (38.98%), Postives = 206/372 (55.38%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCR------SVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+Q+++  PC+LNRQ ITLL TLGV D V E++ R  V+ LD    T+L+DP +A   L       + G+  +           M++ G    +EPFL  +L+  R   ++DLR +TRIF+PD   ++G +DET  L+ GQ     S + R +      S +  +++ EG  V V +NP LHPG      + A DVP L H++N +VF  +G RP P++ SG DLDGD+Y V WD DL+ P ++                    EP +            V ++E+ ++F  YI ND LG I++AH  +ADL P  AR N CL+LA LHS AVD+PK+GVPA  P +LRV  +PDFM K D  TY S+ V
Sbjct:  589 LDVLQFSKYQPCFLNRQIITLLSTLGVEDVVFEKKQREAVAQLD----TILTDPVKAHETL----KLMAPGEIAKV-------LKEMLKCGYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFIPDGRSMMGCLDETRTLEYGQVFVQFSTAGRGQFYDDSISYFKHNSILEGK-VAVAKNPCLHPGDIR--ILKAVDVPALHHMVNCIVFPQKGNRPHPNECSGSDLDGDIYFVGWDADLIPPRQD--------------------EPMDYTPVRPMQLDHEVIIEEVEEYFADYIMNDTLGTISHAHTAFADLEPQKARSNRCLELAKLHSIAVDYPKTGVPAEIPSHLRVRKFPDFMEKPDRQTYESQNV 922          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VDM2_COFAR (RNA-dependent RNA polymerase n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VDM2_COFAR)

HSP 1 Score: 242 bits (617), Expect = 3.840e-68
Identity = 144/372 (38.71%), Postives = 210/372 (56.45%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA--SDSPRCRSVYFSSTLPEGT-------PVLVCRNPSLHPGK-RARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+Q+++  PC+LNRQ ITLL TLGV D V E++ R  V+ LD    T+L+DPA+A  AL       + G     Q+  + +   M++ G    +EPFL  +L+A R   ++DLR +TRIF+P+   ++G +DET  L+ GQ     S   R  ++  ++P           V V +NP LHPG  R  ++V   DVP+L H+++ +VF  +G+RP P++ SG DLDGD+Y V WD DL+ P ++                    EP +            V ++E+ ++F  YI ND LG I++AH  +ADL P  AR   CL+LA LHS AVD+PK+GVPA  P +LRV  +PDFM K +  TY S+ V
Sbjct:  593 LDVLQFSKYQPCFLNRQIITLLSTLGVEDVVFEKKQREAVAQLD----TILTDPAKAHEAL----KLMAPG-----QISNVLKE--MLKCGYKPDSEPFLSMMLQAFRASKLLDLRTKTRIFIPNGRLMMGCLDETRTLEYGQVFVQFSGAGRGQFYDDSIPYSKHNIILEEKVAVAKNPCLHPGDIRILEAV---DVPELHHMVDCIVFPQKGKRPHPNECSGSDLDGDIYFVGWDADLIPPRQD--------------------EPMDYTPVRPMQLDHEVIIEEVEEYFADYIMNDTLGTISHAHTAFADLQPQKARSKPCLKLAMLHSIAVDYPKTGVPAEIPSHLRVRKFPDFMEKPERQTYESQNV 926          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A2Z7ALT6_9LAMI (RNA-dependent RNA polymerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7ALT6_9LAMI)

HSP 1 Score: 241 bits (615), Expect = 6.500e-68
Identity = 156/374 (41.71%), Postives = 206/374 (55.08%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQ-----ASDSPRCRSVYFSSTLPEGTP-------VLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+ +++  PC+LNRQ ITLL TLG+ D V EE+ R  V+ LD +    L DP  A+ AL       S G+        L E   M++ G     EPFL  +L+A R   ++DLR + RIFVP A  ++G +DETG L+ GQ     +S   R  SV  S    E          V+V +NP LHPG      + A DVPQL H+++ VVF  +G RP P++ SG DLDGD+Y V WD DL+ P++                  M Y P   P T        V ++E+ ++F  YI ND+LG IANAH V+AD  P+ A  + CLQLA L S AVDFPK+GVPA  P +LRV  YPDFM K D  TY S++V
Sbjct:  594 LDVLAWSKYQPCFLNRQIITLLSTLGIKDYVFEEKQREAVAQLDDI----LVDPWRAQEAL----ELMSPGEN----TNILKE---MLKCGYKPDEEPFLSMMLQAFRSSKLLDLRMKARIFVPQARQMMGCLDETGTLEYGQVFVQFSSAGHRQVSVESSLFNEESDEYYIIRGKVVVAKNPCLHPGDVR--VLRAIDVPQLHHMVDCVVFPKKGTRPHPNECSGSDLDGDIYFVCWDPDLIPPKQ---------------ISPMDYNP--APSTQLDHD---VTIEEVQEYFTNYIVNDSLGVIANAHTVFADKEPVMAMSDPCLQLAKLFSIAVDFPKTGVPAEIPPDLRVKEYPDFMEKPDKTTYESQRV 930          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: UPI000C87407B (probable RNA-dependent RNA polymerase 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87407B)

HSP 1 Score: 239 bits (611), Expect = 1.610e-67
Identity = 156/378 (41.27%), Postives = 209/378 (55.29%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQAS---DSPRCRSVY------FSS------TLPEGTPVLVCRNPSLHPGK-RARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+ Y++  PCYLNRQ ITLL TLGVPDAV E + R +V  LDK    ML DP  A+ A+       + G+T       L E   M+  G       FL  +L A R   +++LR ++RIF+P    L+G +DET +L  G+          + +Y      FS       T+ EG  V++ +NP LHPG  R   +V   DVP L H+++ VVF  +G+RP P++ SG DLDGD+Y V WD  L+ P ++                 M Y P  KP          V ++E+ D+F+ Y+ ND+LG I+NAH V+AD  PL AR  ECLQLA L S AVDFPK+GVPAV P  L V  YPDFM K+D +TY+SK V
Sbjct:  607 LDVLAYSKYQPCYLNRQLITLLSTLGVPDAVFERKQREIVEQLDK----MLVDPTNAQEAI----EIMAPGET----TSILKE---MLLCGYKPGKRSFLPMLLEAFRATRLLELRTKSRIFIPKGRSLMGCLDETRILDYGEVFVQVSHTGDKHIYDDGLSKFSGGQLDNRTVVEGR-VIIAKNPCLHPGDIRVLQAV---DVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPSLIPPSQD---------------EPMDYYPA-KPVILDHD----VTIEEVQDYFVNYMLNDSLGIISNAHTVFADKKPLKARSEECLQLARLFSIAVDFPKTGVPAVIPPKLYVKEYPDFMEKQDKVTYISKGV 945          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: UPI000C1D6618 (probable RNA-dependent RNA polymerase 1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6618)

HSP 1 Score: 240 bits (612), Expect = 1.720e-67
Identity = 152/377 (40.32%), Postives = 214/377 (56.76%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCR------SVYFSST-----LPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+ +++  PC+LNRQ I+LL TLGV D + E++ R  V+ LD    T+L DP  AE AL    +  S G+        L E   M+R G     EPFL  +L+  R   ++DLR ++RIFVP A  ++G +DETG L+ GQ     S + R R       +Y +++     + +G  V+V +NP LHPG   R  + A DVP L H+++ VVF  +G+RP P++ SG DLDGD+Y V WD DL+ PE+                  M Y P       ++     V ++E+ ++F+ Y+ ND+LG IA+AH V+AD  P  A    C++LA LHS AVDFPK+GVPAV P + RV  YPDFM K D  TY SK+V
Sbjct:  591 LDVLAWSKYQPCFLNRQIISLLSTLGVKDHIFEKKQRDAVAQLD----TVLVDPVRAEEAL----DLMSPGEN----TNILKE---MLRCGYLPDGEPFLSMMLQTFRAAKLLDLRVKSRIFVPQARQMMGCLDETGSLEYGQVFIQFSGAGRRRFCVDFLKIYDNTSDDYNYIVKGM-VVVAKNPCLHPGDVRR--LEAVDVPALYHMVDCVVFPQKGQRPHPNECSGSDLDGDIYFVCWDPDLIPPEQ---------------CSPMDYTP-----APSTKQDHDVTVEEVKEYFVNYMVNDSLGIIASAHTVFADKEPRKALSEPCIELAKLHSTAVDFPKTGVPAVIPPDFRVKEYPDFMEKPDKTTYESKRV 929          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A167Q545_PHYB8 (RNA-dependent RNA polymerase n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167Q545_PHYB8)

HSP 1 Score: 240 bits (613), Expect = 2.160e-67
Identity = 147/362 (40.61%), Postives = 202/362 (55.80%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            ++VI+Y+  +P YLN+Q IT+L  LGV D V       M+ TL+    +MLS+P+EA   L           +   + G     + M++AG   + +P+  ++L   R   + +L+ +T+I VP+ + LLG++DETG LQ G+        S   S        ++V RNP  HPG      V A D P+LRHL +VVVFS +G R  PS  SGGDLDGD Y++ WD+ LL P R              N+  M YEP EKP          V +  I  F++ Y+ NDNLG+IAN HL  AD++  GA    C +LA LHS AVDFPKSG+PA+ PD+L+V  +PDFM KKD  +Y SKKV
Sbjct:  634 LEVIRYSTSIPAYLNKQIITILSALGVEDNVFLTLMDDMLKTLN----SMLSNPSEAIKVL----------NSNIDEFGTTQTMIRMIQAGFMDKKDPYTVNLLNMFRVSMLKNLKKKTKINVPEGAFLLGVMDETGSLQEGEVFCQVTEPSAQSSRKRIITGDIVVYRNPCFHPGDVR--VVNAVDCPKLRHLSDVVVFSSQGYRDIPSMCSGGDLDGDDYTIYWDKRLLPPTR--------------NYTPMDYEP-EKPLQVDE-----VHISHILKFYINYMNNDNLGQIANGHLATADMAFDGALNGSCKRLAQLHSSAVDFPKSGIPAILPDDLKVRCFPDFMQKKDKESYPSKKV 959          
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VDV6_COFAR (RNA-dependent RNA polymerase n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6VDV6_COFAR)

HSP 1 Score: 239 bits (611), Expect = 2.380e-67
Identity = 151/373 (40.48%), Postives = 203/373 (54.42%), Query Frame = 0
Query:    1 MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCRSVYFSSTLP-------EGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 362
            + V+ +++  PC+LNRQ ITLL TLGV D V E++ R  V+ LD    T+L+DP  A  AL        G  T   +         M+  G    +EPFL  +L+  R   ++DLR +TRIF+P    ++G +DET  L+ GQ     S + R R  Y  S  P       EG  V+V +NP LHPG      + A ++P L H+++ VVF   G RP P++ SG DLDGD+Y V WD DL+ P+++               P M Y P      S       V ++E+ ++F  YI ND+LG IANAH V+AD  PL AR   CL+LA L S AVDFPK+GVPA  P +LRV  YPD+M K D  TY S+ V
Sbjct:  594 LDVLAWSKYQPCFLNRQLITLLSTLGVKDVVFEKKQREAVAQLD----TILTDPLRAHEALELM---APGENTNVLK--------EMLICGYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFIPSGRSMMGCLDETRTLEYGQVFVQFSGAGR-RQFYDDSVQPSAHSLILEGK-VVVAKNPCLHPGDIR--ILKAVNLPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDPDLIPPQQD---------------PPMDYAP-----ASTVQLDHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPLKARSEPCLELAQLFSIAVDFPKTGVPAEIPSHLRVKEYPDYMEKSDKPTYESRHV 927          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNY3_ECTSI4.680e-19380.66RNA-dependent RNA polymerase n=1 Tax=Ectocarpus si... [more]
D8LC88_ECTSI7.440e-19080.66RNA-dependent RNA polymerase n=1 Tax=Ectocarpus si... [more]
A0A061EAG0_THECC2.960e-6940.87RNA-dependent RNA polymerase n=4 Tax=Byttnerioidea... [more]
A0A6P6VCT9_COFAR1.440e-6838.98RNA-dependent RNA polymerase n=5 Tax=Coffea TaxID=... [more]
A0A6P6VDM2_COFAR3.840e-6838.71RNA-dependent RNA polymerase n=4 Tax=Coffea TaxID=... [more]
A0A2Z7ALT6_9LAMI6.500e-6841.71RNA-dependent RNA polymerase n=1 Tax=Dorcoceras hy... [more]
UPI000C87407B1.610e-6741.27probable RNA-dependent RNA polymerase 1 n=1 Tax=Di... [more]
UPI000C1D66181.720e-6740.32probable RNA-dependent RNA polymerase 1 n=1 Tax=Ol... [more]
A0A167Q545_PHYB82.160e-6740.61RNA-dependent RNA polymerase n=1 Tax=Phycomyces bl... [more]
A0A6P6VDV6_COFAR2.380e-6740.48RNA-dependent RNA polymerase n=2 Tax=Coffea TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 2..362
e-value: 5.6E-80
score: 269.6
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 2..362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13607contigEcto-sp13_S_contig13607:388..4340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13607.2853.1mRNA_Ecto-sp13_S_contig13607.2853.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13607 367..4340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13607.2853.1 ID=prot_Ecto-sp13_S_contig13607.2853.1|Name=mRNA_Ecto-sp13_S_contig13607.2853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=368bp
MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTM
LSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFL
QSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRC
RSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVF
SCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFN
FPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLV
WADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMC
KKDNMTYLSKKVRRMLQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ