mRNA_Ecto-sp13_S_contig13607.2853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: D8LNY3_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY3_ECTSI) HSP 1 Score: 573 bits (1477), Expect = 9.270e-200 Identity = 299/369 (81.03%), Postives = 305/369 (82.66%), Query Frame = 1
Query: 1 FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPD VIEERY AMVSTLDKV RTMLSDPAEAEMALVRYYN TSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDS CRSV + RA A Q C E MSGGDLDGDLYSVVWDQDLL PERE V G QGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLG+IANAHLV ADLSP GARC+ECLQLAALHSKAVDFPKSGVPAVFPD L+VDSYPDFMCK+DNMTYLSKK+
Sbjct: 220 FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSLGCRSVNH------------------YTANRASIMTNADRFGQ-----------CTQE------MSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKL 553
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: D8LC88_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC88_ECTSI) HSP 1 Score: 567 bits (1461), Expect = 3.110e-191 Identity = 294/369 (79.67%), Postives = 302/369 (81.84%), Query Frame = 1
Query: 1 FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
FP ++VIQYARQLPCYLNRQFITLLGTLGVPD VIEERY AMVSTLDKV RTMLSDPAEAEMALVRYYN TSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVL ATRDKAMIDLRHRTRIFVPDASCLLGIVDETG LQPGQASDS CRSV + RA A Q PEPSKMSGGDLDGDLYSVVWDQDLL PERE V G QGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLG+IANAHLV ADLSPLGARC+ECLQLAALHSKAVDFPKSGVPAVFPD L+VDSYPDFMCK+DNMTYLSKK+
Sbjct: 511 FPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQASDSLGCRSVNH------------------YTANRASIMTNADRFGQCT--------------PEPSKMSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKL 847
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A061EAG0_THECC (RNA-dependent RNA polymerase n=4 Tax=Byttnerioideae TaxID=214909 RepID=A0A061EAG0_THECC) HSP 1 Score: 246 bits (629), Expect = 1.040e-69 Identity = 151/369 (40.92%), Postives = 205/369 (55.56%), Query Frame = 1
Query: 16 TPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEAL-AMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
T + V+ ++++LPCYLNRQ I L+ TLGV D+V E + + +++ LD + L DP A A+ + G L L M+ G +EPFL +LR R ++DLR +TRIFVP+ ++G +DETG L+ GQ S S R +S S + EG V V +NP LHPG + A D L H+++ +VF +G RP P++ SG DLDGDLY V WD+DL+ P FP M Y S+SS V ++E+A++F YI ND+LG I+NAH+V+AD P A C++LA L S AVDFPK+GVPA P LRV YPDFM K D TY S+ V
Sbjct: 597 TSLDVLSWSKRLPCYLNRQIIILMSTLGVKDSVFERKQKEVLNELDAI----LVDPERAREAMEWISH------------GELTNCLRGMLMCGYPPDSEPFLSMMLRTIRASKLLDLRTKTRIFVPNGRIMIGCLDETGTLEYGQVFVQCSVSKRGQSSADSLLVVEGK-VAVTKNPCLHPGDLR--VLKAVDAVVLHHMVDCIVFPQKGNRPHPNECSGSDLDGDLYFVCWDEDLIPP---------------CQFPPMHYG-----SASSSSLDHDVTIEEVAEYFTNYILNDSLGIISNAHIVFADKEPTKALSEPCIELAKLSSIAVDFPKTGVPAKIPHRLRVHEYPDFMDKPDKFTYESEGV 926
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VCT9_COFAR (RNA-dependent RNA polymerase n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6VCT9_COFAR) HSP 1 Score: 245 bits (625), Expect = 3.690e-69 Identity = 146/375 (38.93%), Postives = 208/375 (55.47%), Query Frame = 1
Query: 13 HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCR------SVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+T + V+Q+++ PC+LNRQ ITLL TLGV D V E++ R V+ LD T+L+DP +A L + G+ + M++ G +EPFL +L+ R ++DLR +TRIF+PD ++G +DET L+ GQ S + R + S + +++ EG V V +NP LHPG + A DVP L H++N +VF +G RP P++ SG DLDGD+Y V WD DL+ P ++ EP + V ++E+ ++F YI ND LG I++AH +ADL P AR N CL+LA LHS AVD+PK+GVPA P +LRV +PDFM K D TY S+ V
Sbjct: 586 NTKLDVLQFSKYQPCFLNRQIITLLSTLGVEDVVFEKKQREAVAQLD----TILTDPVKAHETL----KLMAPGEIAKV-------LKEMLKCGYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFIPDGRSMMGCLDETRTLEYGQVFVQFSTAGRGQFYDDSISYFKHNSILEGK-VAVAKNPCLHPGDIR--ILKAVDVPALHHMVNCIVFPQKGNRPHPNECSGSDLDGDIYFVGWDADLIPPRQD--------------------EPMDYTPVRPMQLDHEVIIEEVEEYFADYIMNDTLGTISHAHTAFADLEPQKARSNRCLELAKLHSIAVDYPKTGVPAEIPSHLRVRKFPDFMEKPDRQTYESQNV 922
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VDM2_COFAR (RNA-dependent RNA polymerase n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VDM2_COFAR) HSP 1 Score: 244 bits (622), Expect = 9.880e-69 Identity = 145/375 (38.67%), Postives = 212/375 (56.53%), Query Frame = 1
Query: 13 HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA--SDSPRCRSVYFSSTLPEGT-------PVLVCRNPSLHPGK-RARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+T + V+Q+++ PC+LNRQ ITLL TLGV D V E++ R V+ LD T+L+DPA+A AL + G Q+ + + M++ G +EPFL +L+A R ++DLR +TRIF+P+ ++G +DET L+ GQ S R ++ ++P V V +NP LHPG R ++V DVP+L H+++ +VF +G+RP P++ SG DLDGD+Y V WD DL+ P ++ EP + V ++E+ ++F YI ND LG I++AH +ADL P AR CL+LA LHS AVD+PK+GVPA P +LRV +PDFM K + TY S+ V
Sbjct: 590 NTKLDVLQFSKYQPCFLNRQIITLLSTLGVEDVVFEKKQREAVAQLD----TILTDPAKAHEAL----KLMAPG-----QISNVLKE--MLKCGYKPDSEPFLSMMLQAFRASKLLDLRTKTRIFIPNGRLMMGCLDETRTLEYGQVFVQFSGAGRGQFYDDSIPYSKHNIILEEKVAVAKNPCLHPGDIRILEAV---DVPELHHMVDCIVFPQKGKRPHPNECSGSDLDGDIYFVGWDADLIPPRQD--------------------EPMDYTPVRPMQLDHEVIIEEVEEYFADYIMNDTLGTISHAHTAFADLQPQKARSKPCLKLAMLHSIAVDYPKTGVPAEIPSHLRVRKFPDFMEKPERQTYESQNV 926
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A2Z7ALT6_9LAMI (RNA-dependent RNA polymerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7ALT6_9LAMI) HSP 1 Score: 243 bits (620), Expect = 1.670e-68 Identity = 157/377 (41.64%), Postives = 208/377 (55.17%), Query Frame = 1
Query: 13 HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQ-----ASDSPRCRSVYFSSTLPEGTP-------VLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+T + V+ +++ PC+LNRQ ITLL TLG+ D V EE+ R V+ LD + L DP A+ AL S G+ L E M++ G EPFL +L+A R ++DLR + RIFVP A ++G +DETG L+ GQ +S R SV S E V+V +NP LHPG + A DVPQL H+++ VVF +G RP P++ SG DLDGD+Y V WD DL+ P++ M Y P P T V ++E+ ++F YI ND+LG IANAH V+AD P+ A + CLQLA L S AVDFPK+GVPA P +LRV YPDFM K D TY S++V
Sbjct: 591 NTKLDVLAWSKYQPCFLNRQIITLLSTLGIKDYVFEEKQREAVAQLDDI----LVDPWRAQEAL----ELMSPGEN----TNILKE---MLKCGYKPDEEPFLSMMLQAFRSSKLLDLRMKARIFVPQARQMMGCLDETGTLEYGQVFVQFSSAGHRQVSVESSLFNEESDEYYIIRGKVVVAKNPCLHPGDVR--VLRAIDVPQLHHMVDCVVFPKKGTRPHPNECSGSDLDGDIYFVCWDPDLIPPKQ---------------ISPMDYNP--APSTQLDHD---VTIEEVQEYFTNYIVNDSLGVIANAHTVFADKEPVMAMSDPCLQLAKLFSIAVDFPKTGVPAEIPPDLRVKEYPDFMEKPDKTTYESQRV 930
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A167Q545_PHYB8 (RNA-dependent RNA polymerase n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167Q545_PHYB8) HSP 1 Score: 243 bits (620), Expect = 3.070e-68 Identity = 149/369 (40.38%), Postives = 204/369 (55.28%), Query Frame = 1
Query: 1 FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQASDSPRCRSVYFSSTLPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
F H ++VI+Y+ +P YLN+Q IT+L LGV D V M+ TL+ +MLS+P+EA L + + G + M++AG + +P+ ++L R + +L+ +T+I VP+ + LLG++DETG LQ G+ S S ++V RNP HPG V A D P+LRHL +VVVFS +G R PS SGGDLDGD Y++ WD+ LL P R N+ M YEP EKP V + I F++ Y+ NDNLG+IAN HL AD++ GA C +LA LHS AVDFPKSG+PA+ PD+L+V +PDFM KKD +Y SKKV
Sbjct: 627 FDSDHLVLEVIRYSTSIPAYLNKQIITILSALGVEDNVFLTLMDDMLKTLN----SMLSNPSEAIKVL----------NSNIDEFGTTQTMIRMIQAGFMDKKDPYTVNLLNMFRVSMLKNLKKKTKINVPEGAFLLGVMDETGSLQEGEVFCQVTEPSAQSSRKRIITGDIVVYRNPCFHPGDVR--VVNAVDCPKLRHLSDVVVFSSQGYRDIPSMCSGGDLDGDDYTIYWDKRLLPPTR--------------NYTPMDYEP-EKPLQVDE-----VHISHILKFYINYMNNDNLGQIANGHLATADMAFDGALNGSCKRLAQLHSSAVDFPKSGIPAILPDDLKVRCFPDFMQKKDKESYPSKKV 959
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: UPI000C1D6618 (probable RNA-dependent RNA polymerase 1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6618) HSP 1 Score: 242 bits (617), Expect = 4.400e-68 Identity = 153/380 (40.26%), Postives = 216/380 (56.84%), Query Frame = 1
Query: 13 HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCR------SVYFSST-----LPEGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+T + V+ +++ PC+LNRQ I+LL TLGV D + E++ R V+ LD T+L DP AE AL + S G+ L E M+R G EPFL +L+ R ++DLR ++RIFVP A ++G +DETG L+ GQ S + R R +Y +++ + +G V+V +NP LHPG R + A DVP L H+++ VVF +G+RP P++ SG DLDGD+Y V WD DL+ PE+ M Y P ++ V ++E+ ++F+ Y+ ND+LG IA+AH V+AD P A C++LA LHS AVDFPK+GVPAV P + RV YPDFM K D TY SK+V
Sbjct: 588 NTKLDVLAWSKYQPCFLNRQIISLLSTLGVKDHIFEKKQRDAVAQLD----TVLVDPVRAEEAL----DLMSPGEN----TNILKE---MLRCGYLPDGEPFLSMMLQTFRAAKLLDLRVKSRIFVPQARQMMGCLDETGSLEYGQVFIQFSGAGRRRFCVDFLKIYDNTSDDYNYIVKGM-VVVAKNPCLHPGDVRR--LEAVDVPALYHMVDCVVFPQKGQRPHPNECSGSDLDGDIYFVCWDPDLIPPEQ---------------CSPMDYTP-----APSTKQDHDVTVEEVKEYFVNYMVNDSLGIIASAHTVFADKEPRKALSEPCIELAKLHSTAVDFPKTGVPAVIPPDFRVKEYPDFMEKPDKTTYESKRV 929
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: A0A6P6VDV6_COFAR (RNA-dependent RNA polymerase n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6VDV6_COFAR) HSP 1 Score: 241 bits (616), Expect = 6.110e-68 Identity = 152/376 (40.43%), Postives = 205/376 (54.52%), Query Frame = 1
Query: 13 HTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA----SDSPRCRSVYFSSTLP-------EGTPVLVCRNPSLHPGKRARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+T + V+ +++ PC+LNRQ ITLL TLGV D V E++ R V+ LD T+L+DP A AL G T + M+ G +EPFL +L+ R ++DLR +TRIF+P ++G +DET L+ GQ S + R R Y S P EG V+V +NP LHPG + A ++P L H+++ VVF G RP P++ SG DLDGD+Y V WD DL+ P+++ P M Y P S V ++E+ ++F YI ND+LG IANAH V+AD PL AR CL+LA L S AVDFPK+GVPA P +LRV YPD+M K D TY S+ V
Sbjct: 591 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVKDVVFEKKQREAVAQLD----TILTDPLRAHEALELM---APGENTNVLK--------EMLICGYKPDSEPFLSMMLQTFRASKLLDLRTKTRIFIPSGRSMMGCLDETRTLEYGQVFVQFSGAGR-RQFYDDSVQPSAHSLILEGK-VVVAKNPCLHPGDIR--ILKAVNLPALHHMVDCVVFPQRGRRPHPNECSGSDLDGDIYFVCWDPDLIPPQQD---------------PPMDYAP-----ASTVQLDHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPLKARSEPCLELAQLFSIAVDFPKTGVPAEIPSHLRVKEYPDYMEKSDKPTYESRHV 927
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Match: UPI000C87407B (probable RNA-dependent RNA polymerase 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87407B) HSP 1 Score: 240 bits (612), Expect = 1.460e-67 Identity = 156/385 (40.52%), Postives = 211/385 (54.81%), Query Frame = 1
Query: 1 FPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMLSDPAEAEMALVRYYNTTSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQAS---DSPRCRSVY------FSS------TLPEGTPVLVCRNPSLHPGK-RARDSVTAGDVPQLRHLINVVVFSCEGERPEPSKMSGGDLDGDLYSVVWDQDLLTPEREWVTGAQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGRIANAHLVWADLSPLGARCNECLQLAALHSKAVDFPKSGVPAVFPDNLRVDSYPDFMCKKDNMTYLSKKV 1107
+ + + V+ Y++ PCYLNRQ ITLL TLGVPDAV E + R +V LDK ML DP A+ A+ + G+T L E M+ G FL +L A R +++LR ++RIF+P L+G +DET +L G+ + +Y FS T+ EG V++ +NP LHPG R +V DVP L H+++ VVF +G+RP P++ SG DLDGD+Y V WD L+ P ++ M Y P KP V ++E+ D+F+ Y+ ND+LG I+NAH V+AD PL AR ECLQLA L S AVDFPK+GVPAV P L V YPDFM K+D +TY+SK V
Sbjct: 600 YESGNNKLDVLAYSKYQPCYLNRQLITLLSTLGVPDAVFERKQREIVEQLDK----MLVDPTNAQEAI----EIMAPGET----TSILKE---MLLCGYKPGKRSFLPMLLEAFRATRLLELRTKSRIFIPKGRSLMGCLDETRILDYGEVFVQVSHTGDKHIYDDGLSKFSGGQLDNRTVVEGR-VIIAKNPCLHPGDIRVLQAV---DVPNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPSLIPPSQD---------------EPMDYYPA-KPVILDHD----VTIEEVQDYFVNYMLNDSLGIISNAHTVFADKKPLKARSEECLQLARLFSIAVDFPKTGVPAVIPPKLYVKEYPDFMEKQDKVTYISKGV 945 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13607.2853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13607.2853.1 >prot_Ecto-sp13_S_contig13607.2853.1 ID=prot_Ecto-sp13_S_contig13607.2853.1|Name=mRNA_Ecto-sp13_S_contig13607.2853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=368bp MQVIQYARQLPCYLNRQFITLLGTLGVPDAVIEERYRAMVSTLDKVRRTMback to top mRNA from alignment at Ecto-sp13_S_contig13607:367..4340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13607.2853.1 ID=mRNA_Ecto-sp13_S_contig13607.2853.1|Name=mRNA_Ecto-sp13_S_contig13607.2853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13607:367..4340+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13607:367..4340+ >mRNA_Ecto-sp13_S_contig13607.2853.1 ID=mRNA_Ecto-sp13_S_contig13607.2853.1|Name=mRNA_Ecto-sp13_S_contig13607.2853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13607:367..4340+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |