mRNA_Ecto-sp13_S_contig13604.2852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13604.2852.1
Unique NamemRNA_Ecto-sp13_S_contig13604.2852.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A6P7XAL9_9AMPH (Ornithine aminotransferase n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7XAL9_9AMPH)

HSP 1 Score: 57.8 bits (138), Expect = 5.300e-7
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVCGYSV 128
            YPVSAVLADDEIMLT+KPGQHGSTYG        PL C  +V
Sbjct:  349 YPVSAVLADDEIMLTIKPGQHGSTYGG------NPLACRVAV 384
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A6V7W907_9BILA (Ornithine aminotransferase n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7W907_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-7
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYG 80
            YP+SAVLADDEIMLT+KPGQHGSTYG
Sbjct:   25 YPISAVLADDEIMLTIKPGQHGSTYG 50
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: K4HB76_CHESE (Ornithine aminotransferase (Fragment) n=1 Tax=Chelydra serpentina TaxID=8475 RepID=K4HB76_CHESE)

HSP 1 Score: 54.3 bits (129), Expect = 8.280e-7
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVC 116
            YPVSAVL DDEIMLT+KPG+HGSTYG        PL C
Sbjct:    1 YPVSAVLCDDEIMLTIKPGEHGSTYGG------NPLAC 32
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A8C7KRA4_ONCKI (Ornithine aminotransferase n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7KRA4_ONCKI)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVCGYSV 128
            YPVSAVL DDE+MLT+KPG+HGSTYG        PL CG ++
Sbjct:  283 YPVSAVLCDDEVMLTIKPGEHGSTYGG------NPLACGVAM 318
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A7E4VET6_PANRE (Ornithine aminotransferase n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VET6_PANRE)

HSP 1 Score: 56.6 bits (135), Expect = 1.300e-6
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVC 116
            YP+SAVLADDEIMLT+KPGQHGSTYG        PL C
Sbjct:  288 YPISAVLADDEIMLTIKPGQHGSTYGG------NPLAC 319
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A1S3N5V9_SALSA (Ornithine aminotransferase n=26 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3N5V9_SALSA)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVCGYSV 128
            YPVSAVL DDE+MLT+KPG+HGSTYG        PL CG ++
Sbjct:  301 YPVSAVLCDDEVMLTIKPGEHGSTYGG------NPLACGVAM 336
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: D8LSH5_ECTSI (Ornithine aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYG 80
            YPVSAVLADDEIMLTVKPGQHGSTYG
Sbjct:  303 YPVSAVLADDEIMLTVKPGQHGSTYG 328
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A830HRH2_9CHLO (Ornithine aminotransferase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HRH2_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-6
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVC 116
            YPVSAVLADDE+MLT+KPGQHGSTYG        PL C
Sbjct:  344 YPVSAVLADDEVMLTIKPGQHGSTYGG------NPLAC 375
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: A0A674D985_SALTR (Ornithine aminotransferase n=9 Tax=Salmoninae TaxID=504568 RepID=A0A674D985_SALTR)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYGKLTPVFPQPLVCGYSV 128
            YPVSAVL DDE+MLT+KPG+HGSTYG        PL CG ++
Sbjct:  360 YPVSAVLCDDEVMLTIKPGEHGSTYGG------NPLACGVAM 395
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BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Match: UPI001C0528D0 (ornithine aminotransferase, mitochondrial-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C0528D0)

HSP 1 Score: 53.5 bits (127), Expect = 1.600e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:    3 YPVSAVLADDEIMLTVKPGQHGSTYG 80
            YPVSAVL DDEIMLT+KPG+HGSTYG
Sbjct:   48 YPVSAVLCDDEIMLTIKPGEHGSTYG 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13604.2852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P7XAL9_9AMPH5.300e-769.05Ornithine aminotransferase n=5 Tax=Gymnophiona Tax... [more]
A0A6V7W907_9BILA6.210e-792.31Ornithine aminotransferase n=1 Tax=Meloidogyne ent... [more]
K4HB76_CHESE8.280e-768.42Ornithine aminotransferase (Fragment) n=1 Tax=Chel... [more]
A0A8C7KRA4_ONCKI1.280e-661.90Ornithine aminotransferase n=1 Tax=Oncorhynchus ki... [more]
A0A7E4VET6_PANRE1.300e-671.05Ornithine aminotransferase n=1 Tax=Panagrellus red... [more]
A0A1S3N5V9_SALSA1.310e-661.90Ornithine aminotransferase n=26 Tax=Protacanthopte... [more]
D8LSH5_ECTSI1.310e-6100.00Ornithine aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A830HRH2_9CHLO1.340e-671.05Ornithine aminotransferase n=1 Tax=Pycnococcus pro... [more]
A0A674D985_SALTR1.340e-661.90Ornithine aminotransferase n=9 Tax=Salmoninae TaxI... [more]
UPI001C0528D01.600e-688.46ornithine aminotransferase, mitochondrial-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13604contigEcto-sp13_S_contig13604:3005..3432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size428
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.6286774-UTR-Ecto-sp13_S_contig13604:3004..30421681462726.6286774-UTR-Ecto-sp13_S_contig13604:3004..3042Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13604 3005..3042 +
1681462726.6503534-UTR-Ecto-sp13_S_contig13604:3363..34321681462726.6503534-UTR-Ecto-sp13_S_contig13604:3363..3432Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13604 3364..3432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.6406791-CDS-Ecto-sp13_S_contig13604:3042..33631681462726.6406791-CDS-Ecto-sp13_S_contig13604:3042..3363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13604 3043..3363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13604.2852.1prot_Ecto-sp13_S_contig13604.2852.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13604 3043..3363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13604.2852.1

>prot_Ecto-sp13_S_contig13604.2852.1 ID=prot_Ecto-sp13_S_contig13604.2852.1|Name=mRNA_Ecto-sp13_S_contig13604.2852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MLTVKPGQHGSTYGKLTPVFPQPLVCGYSVPFFGPKRYCSSMHEHQRVPY
PLLAAALNFGYGEQSRLLVLFRYRDEKEQRLGGHHYWCHLRTHTVNPSVC
HVFGGV*
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mRNA from alignment at Ecto-sp13_S_contig13604:3005..3432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13604.2852.1 ID=mRNA_Ecto-sp13_S_contig13604.2852.1|Name=mRNA_Ecto-sp13_S_contig13604.2852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13604:3005..3432+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTACCCGGTGTCGGCGGTCCTTGCGGACGACGAGATCATGCTCACCGTC
AAGCCCGGCCAGCACGGCTCCACCTACGGCAAGTTAACACCAGTGTTTCC
TCAACCCCTTGTCTGTGGGTACTCTGTACCCTTCTTTGGCCCGAAACGGT
ACTGCAGTAGTATGCATGAACATCAGCGTGTACCGTACCCTCTTTTGGCC
GCAGCCCTCAACTTCGGGTACGGCGAGCAGAGCAGGCTGCTGGTTCTCTT
TAGGTACAGAGACGAGAAGGAGCAGCGACTTGGGGGGCATCATTATTGGT
GTCACCTACGTACACACACCGTAAACCCTTCCGTGTGCCATGTGTTCGGC
GGGGTGTGATGTTTTTATGTCGTCACCTACGTTCGGACGGCAGCAACCTT
ACACGTCTGTAACCGTTCAGGAACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13604:3005..3432+

>mRNA_Ecto-sp13_S_contig13604.2852.1 ID=mRNA_Ecto-sp13_S_contig13604.2852.1|Name=mRNA_Ecto-sp13_S_contig13604.2852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13604:3005..3432+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCACCGTCAAGCCCGGCCAGCACGGCTCCACCTACGGCAAGTTAAC
ACCAGTGTTTCCTCAACCCCTTGTCTGTGGGTACTCTGTACCCTTCTTTG
GCCCGAAACGGTACTGCAGTAGTATGCATGAACATCAGCGTGTACCGTAC
CCTCTTTTGGCCGCAGCCCTCAACTTCGGGTACGGCGAGCAGAGCAGGCT
GCTGGTTCTCTTTAGGTACAGAGACGAGAAGGAGCAGCGACTTGGGGGGC
ATCATTATTGGTGTCACCTACGTACACACACCGTAAACCCTTCCGTGTGC
CATGTGTTCGGCGGGGTGTGA
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