mRNA_Ecto-sp13_S_contig1360.2849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1360.2849.1
Unique NamemRNA_Ecto-sp13_S_contig1360.2849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 704 bits (1818), Expect = 1.110e-249
Identity = 356/390 (91.28%), Postives = 370/390 (94.87%), Query Frame = 1
Query:    1 MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYRELPLAVLRVTSANGGGAPPMSDLAIFAEDPQWACKVERFMVQTGADRHGVENALDQVRNVSWESGRTLRGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFEVDAMTREATILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
            MTSR A+RHALKR+L VSS L LQGLATGRLHSPNVSVNFDVENE YRELPLAVLRVT ANGGGAPP+SDLA+FAEDP WACKVERFMVQ GADRHGVENALDQVR+VSWESGRTL GKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAAS HT EAHFLLVADGFE+DAMTREATILRQGKGG+GFRQLE+SRDP APDEVVIDKR  IS  ALEALVQADSDLFFLPLLLEAPSPEHDDADSVR+C+ FH+EWMERTPDKVLEDNVLDRRKRFP+AVVVVIHDE SLVRAALDE+AIVVEHILILVSLQSWHG GKDTSPTLELLNDMLEDA+SPSFGKLQVEVGSWATEREQRQHGDSLIKKDP RDFFRVVVMNGDEFWHPVELAK
Sbjct:    1 MTSRVALRHALKRLLCVSSIL-LQGLATGRLHSPNVSVNFDVENEHYRELPLAVLRVTPANGGGAPPVSDLAVFAEDPNWACKVERFMVQAGADRHGVENALDQVRHVSWESGRTLLGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASTHTAEAHFLLVADGFELDAMTREATILRQGKGGDGFRQLEYSRDPPAPDEVVIDKRNQISPEALEALVQADSDLFFLPLLLEAPSPEHDDADSVRRCMIFHSEWMERTPDKVLEDNVLDRRKRFPVAVVVVIHDENSLVRAALDEVAIVVEHILILVSLQSWHGAGKDTSPTLELLNDMLEDADSPSFGKLQVEVGSWATEREQRQHGDSLIKKDP-RDFFRVVVMNGDEFWHPVELAK 388          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 1.270e-84
Identity = 224/625 (35.84%), Postives = 232/625 (37.12%), Query Frame = 1
Query:  262 MVQTGADRHGVENALDQVRNVSWESGRTLRGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFEVDAMTREAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDP 1101
            MVQTGADRHGVENALDQVR+VSWESGRTLRGKYLVLLAFAEDA DVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFE+DA TREAT                                                                                                                                                                                                                                                                                                                                                         ILRQGKGG+GFRQLE+SRDP APDEVVIDKR  IS  ALEALVQADSDLFFLPLLLEAPSPEHDD DSVR+C+TFH+EWM RTPDKVLEDNVLDRRKRFP+AVVVVIHDETSLVRAALDEIAIVVEHI                                       VEVGSWATEREQRQHGDSLIKKDP
Sbjct:    1 MVQTGADRHGVENALDQVRHVSWESGRTLRGKYLVLLAFAEDAPDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFELDATTREATVRTFHTVNRAMKIVPGNSVVAILSTSTLLLPTSSVDTCIPTTKDAECFDDVDSDAGREGAASDVFVAYERLKSVVSVAIPPTESSRMDCPYGSPVEATGNTPPNDNRPSPTGAEGRRKNEGDHLRHRSNIDRQRGGLLVTALPPRTTSDRRGDRDGHVSAWSQGGAQHEGHGQGVAQETETAEWIPSRSSPPLAPPREPPATRISDTARIPLLVFDTETFLALGDLDERFSFQGGVAEWISRAQPSSASGCRYSNAGRHLGALSTVRPATEYGSATASPCTGFAVKHVHERKWGRLFVRTWPGYGAGTASQRTAGSTDEHRMGEAQHRTTDPLEDGVQRDKPLEQILRQGKGGDGFRQLEYSRDPPAPDEVVIDKRNQISPEALEALVQADSDLFFLPLLLEAPSPEHDDTDSVRRCMTFHSEWMGRTPDKVLEDNVLDRRKRFPVAVVVVIHDETSLVRAALDEIAIVVEHI---------------------------------------VEVGSWATEREQRQHGDSLIKKDP 586          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 6.980e-71
Identity = 125/218 (57.34%), Postives = 166/218 (76.15%), Query Frame = 1
Query:  526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPE---HDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
            T+ RQG G + FR+ +   DP A  EVVID+ + +    LE LVQ+D+DLFFLPLLL  PS E   + + D    C++FH+EWM R+P++ L    LDRRKRFP+AVVVV+HD+ SL+RA L+E+A VVEHIL++VS++ WHG   D SPTL +L  ML+DA+SP+ GKL+VEVGSWATEREQR++G+++IK+D  R+F RVVV++ DEFWHPVELAK
Sbjct:  562 TLQRQGGGEDEFRRRDGFEDPHATGEVVIDQWHGLPPAKLEDLVQSDADLFFLPLLLWEPSSEAVPNGEKDPKELCLSFHSEWMGRSPNERLAREALDRRKRFPVAVVVVVHDDISLMRAVLEEVAAVVEHILVVVSVRPWHGSATDVSPTLRMLECMLQDADSPTRGKLRVEVGSWATEREQREYGNAIIKED-IRNFSRVVVLDTDEFWHPVELAK 778          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.590e-65
Identity = 119/218 (54.59%), Postives = 160/218 (73.39%), Query Frame = 1
Query:  526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPE---HDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
            T   +G G + FR+ +   D  A  EVVID+ + +    LE LVQAD+DLFFLPLLL  PS E   + + D    C++FH+EWM R+P+K L    L+RRKRFP+AVVVV+HD+ SL+RA L+E+A VVEHIL++VS++ WH    D SPTL +L  ML+DA+SP+ GKL+VEVGSWATE  QR++G++LI++D  R+F RVVV++ DEFWHPVEL+K
Sbjct:  524 TFQHEGGGEDEFRRRDGFEDLHASGEVVIDQWHGLPPAKLEDLVQADADLFFLPLLLWEPSSEGAPNGEKDPKELCISFHSEWMGRSPNKRLAREALERRKRFPVAVVVVVHDDISLMRAVLEEVAAVVEHILVVVSVRPWHESATDVSPTLRMLECMLQDADSPTRGKLRVEVGSWATEPAQREYGNALIREDV-RNFSRVVVIDTDEFWHPVELSK 740          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.860e-49
Identity = 103/215 (47.91%), Postives = 135/215 (62.79%), Query Frame = 1
Query:  526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
            T+L     G+G +Q     D  A DEV +D+R  +    LEAL+QAD+DLFFL LLL    P  D  D  +  + FH+EWMER PD VL   VLDRRKRFP+A VVV++++ S++RA+L+E+A+VVEHI+ ++ L                              +LQVEVGSWATE EQR++G+ LI++DP R FFRVVVM+ DEFWHP ELAK
Sbjct:  383 TVLSNCISGDGIQQPTDFADRHACDEVSLDQRNSLHWAKLEALIQADADLFFLRLLL-VEQPSVDKVDPAQLSIAFHSEWMERAPDTVLAQGVLDRRKRFPVAAVVVVNEDISILRASLEEVAVVVEHIMSILPLME---------------------------RQLQVEVGSWATETEQREYGNLLIREDP-RHFFRVVVMDTDEFWHPAELAK 568          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JEI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 8.950e-37
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYRELPLAVLRVTSANGGGAPPMSDLAIFAEDPQWACKV 252
            MTSRAA RHALKR+L VSSFL+L+GLA  RLHSPNVSVNFDVENE Y ELPLAVLRVT ANG GAPP+SDLAIFAEDP+WA KV
Sbjct:    2 MTSRAAFRHALKRLLCVSSFLLLRGLAITRLHSPNVSVNFDVENEQYPELPLAVLRVTPANGAGAPPVSDLAIFAEDPKWAWKV 85          
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A7S2LSU5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSU5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.220e-9
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  820 RFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
            +F +  V  ++D+T  +   LD I   + H++IL+S   W+G  + T  TL  L      A     GK+ +  G+W++E +QR  G+   +     D+  V+V++GDEFWHPV L +
Sbjct:  396 KFRVCAVFCVYDDTRFLEILLDSILPSIHHVVILLSSTPWNGEKRSTKHTL--LAAQRVAASDVGQGKVSIITGAWSSESDQRNFGNDFARM-LGADY--VMVIDGDEFWHPVHLER 507          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FK27_ECTSI1.110e-24991.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH3_9PHAE1.270e-8435.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK33_ECTSI6.980e-7157.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN8_9PHAE2.590e-6554.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA5_9PHAE1.860e-4947.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEI6_9PHAE8.950e-3783.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2LSU5_9STRA4.220e-932.48Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1360contigEcto-sp13_S_contig1360:9336..17622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score247.7
Seed ortholog evalue9.1e-63
Seed eggNOG ortholog2880.D7FK33
Model size1173
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG OGs2EN0C@1,2SRIN@2759
Cds size1173
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1360.2849.1prot_Ecto-sp13_S_contig1360.2849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1360 9336..17622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.3444724-CDS-Ecto-sp13_S_contig1360:9335..95841681462726.3444724-CDS-Ecto-sp13_S_contig1360:9335..9584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 9336..9584 +
1681462726.3535862-CDS-Ecto-sp13_S_contig1360:12075..122101681462726.3535862-CDS-Ecto-sp13_S_contig1360:12075..12210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 12076..12210 +
1681462726.3615766-CDS-Ecto-sp13_S_contig1360:12847..129911681462726.3615766-CDS-Ecto-sp13_S_contig1360:12847..12991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 12848..12991 +
1681462726.369619-CDS-Ecto-sp13_S_contig1360:14823..150071681462726.369619-CDS-Ecto-sp13_S_contig1360:14823..15007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 14824..15007 +
1681462726.3775842-CDS-Ecto-sp13_S_contig1360:15565..157651681462726.3775842-CDS-Ecto-sp13_S_contig1360:15565..15765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 15566..15765 +
1681462726.3880928-CDS-Ecto-sp13_S_contig1360:16644..167551681462726.3880928-CDS-Ecto-sp13_S_contig1360:16644..16755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 16645..16755 +
1681462726.3968048-CDS-Ecto-sp13_S_contig1360:17042..171221681462726.3968048-CDS-Ecto-sp13_S_contig1360:17042..17122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 17043..17122 +
1681462726.4089873-CDS-Ecto-sp13_S_contig1360:17552..176221681462726.4089873-CDS-Ecto-sp13_S_contig1360:17552..17622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 17553..17622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1360.2849.1

>prot_Ecto-sp13_S_contig1360.2849.1 ID=prot_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp
MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYREL
PLAVLRVTSANGGGAPPMSDLAIFAEDPQWACKVERFMVQTGADRHGVEN
ALDQVRNVSWESGRTLRGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAA
SMHTTEAHFLLVADGFEVDAMTREATILRQGKGGNGFRQLEHSRDPRAPD
EVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVT
FHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIV
VEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWA
TEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1360:9336..17622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1360.2849.1 ID=mRNA_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:9336..17622+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGAGAGCGGCAGTTCGGCACGCCCTCAAACGGGTTCTGTGGGT GTCTTCGTTTTTAATACTGCAAGGGCTCGCCACCGGGCGACTACACTCTC CAAACGTATCCGTGAACTTCGACGTTGAAAATGAGCTGTACCGAGAACTT CCTCTGGCTGTGCTGCGGGTGACCTCGGCCAATGGTGGTGGAGCTCCTCC TATGTCGGATCTGGCTATTTTCGCCGAAGATCCTCAGTGGGCGTGCAAGG TACAGAGCTATCACAGAATAGCTGCTGTTGAGAATGACCAGGCTCAAATT TGGGGCTACAACGGCTAAGCTTTGGATCCTACCACAGCGTCCTATGCGGT AGTCCATGCTCGACGGGGCAGTGGGGGTGGAATGAAAATCCCTCGGGCCG CCCCCTGCCGCTGCTATACACCGCGTATGTATGTGTGCTCATTGCTGAAG GCAACATGTAAGAATATGCGTTGATACCCTACGTGATGCATGTAATGTGT AGCCTGAACCTACAGTCCACTGTACATCTTTCATCCGTTGCTGAAAATAC CGACCTGCTGTGATCCCGAAGCCCCCGGACCTGCGAAAAAACGATCTCAC ATCTTTGTCTCGTAGTAAGTTGGTATCCCGGAACCACCAACGAACGGCGT TGAGGCACTCTCTGCTTGTGTGCAAACGTCCGAATACAACTTTCAGGGGG ATACGAGAATGATTACACCAGGATTTCTATTTAATTCCACGTGGGTGTGA TGGCGCTCCCGCCGCATATATTTTCTCTGGGTAGGCATGATTAGAACCCA CTTCGGTATGCGGTGGAGCAAGTCGCGCAAACATCACACCAGATAACTCT TACTTCCATACGGTTTTATTCTCAGCCTTCTAAATCAATGATGAGTCGCA AATATTATGTGCATACAATACATACCAGGCGAGCCCCGCTGATTCCCGCC TGTTTCTTTTTTGTATTGTCTGGTCTGTCGAACGCACCACCAGTGGGCTC GGGCTGTGACACATAGATACACTTCTGTATTTGTTTAATTAATAACGTAT GAGACCAGAGCGGTAATAGGGATACGCAGAGACGCACAAACAAACCTGCG AGTGGCACAGAAAAACTACACAGACGACGGCGTGGTGAGCGGTGGGGGTA CACAGAGGAAGCGACTTGTGAATACAGATAGTACGGAAACCTACACAGAC AGCGGTTCAGTTGTCAAACACATCGAGGACCTGGAAACAAAGCCGGATTG AATTAATGCGAAAAACCTCTACACAGAGGAACCGACTGTTTGAATACAGA AAGTACAGAATCCTACACAGCCGTCTAGTTGTCAAATCGGGGACTTACAA CCAGAGCCGGATTTAATCAATGTACACATTTTCAAGTAAGTCAATAATCA ATTTCCAACCTCGGGCAGACGATGTATTATGGGTTCGACGGACTTGAAAC GCGAGGCTCTCTACTTGCCTTACCTATGTCTCACTCTCGAAGCAAGGAAC TCGAGGCACTGCTCCGCTGTGCAGAAACTCTCTCGACAAGAGACGGAAAA CATGATAAAATGCGAGGTACACGCGCCGACACCATACCCCATAATATAGT GGCCTCTTTCAATAACACACCTGAGAATCATCGCGCGGTGCCCCCAGACC CTGTACGTTGTGTTTTTCAAGCAGTGCAGGAACAAAGTAAGTACAGGGAC GAACCGGGGCACCCCTCCTCTTCCCCCCTCGCTGTTGTTTCGGCCTTATC AAAGTTTAGTGGTTTTTCAAGTAAAGTAGGAGTGGGTATGGATGTCTGGC TAGTATCACAATTTCGGCCTCGTCGAGGTTTGGAGCAAGCGGTGCATCCT TGTGTATCGCTCAGAGCCCCTGCGTTTGCCTGTCTCTTCTCTTGTTTCGG TACGTATAGGGTTAAGGCTATTCTGTAGCAGCTCTCACAGTGATCTGATG TTGATCGAAACGTCTGGCGAGCGAGAAATACCCCATGGTGTACTTACGGT CTACACTGCGTCCAAACGCTGGCCACTTGGTATGCCCTTCTTAATCTCCG ACAACGTTCATAGGATTTGAGTTTCTTGATGGGGTGAGGTATCATTGGGG GTAACACAGTGCGATTGTTCCGCGTGCTGATATGTTTTCTTTTGCCCCGC TACGATTTGTACTGGCGTTCAAAATGGACTGGCTTATCGTTGTTAAAGTG ACATTTGTAGACCTACAGGTAGTTAGCGACGTCATAGCTATCCAAAAAAT CTATCGAACGATAGAGAACTCTTGTTTCATGCTCTTGTGATGAAGGACAT GCGTAGCGGATTTTCGAACGGTCTAGCCAGGTCTAAATCCGCTGTTGATT CGCGTGAAGTTGGCCATCCAGAGAGTTGAAAGAGACGGGTGATGCAACCG CAGCCCGATGGCGATGACACAGAATTTTCCAGCCGAACCAAAACCAGCGG TCTTCAGCCAGGTAAAAAACCGGCGGTGATGAACAAGGTGGACTGAATCG CTCGGCAACCATACACTCGGAGGGCATCTGGGAGAAACGTGTACCCGCTT GTGACTCCAATTGTTTCGTCGAACACCCACACGAAAACATATGTGGACTG GCGCCAGGATGGACGGGACAAACACACGCACACACCTTCACAGCAGTTAT TCGTTTGGTAGGATGGTTTTAGGGATCTGTCACAGGCTGCAACGTCGGTG AACGTTCGACCCTCAATCGCACTTCTCTGTCGTCTTCCAGGTTGAAAGGT TCATGGTCCAGACGGGGGCGGACCGTCATGGTGTTGAAAATGCTTTGGAC CAAGTGCGCAATGTGTCGTGGGAATCTGGGCGGACGCTACGAGGGAAGTA TTTGGTGCTGCTCGCTTTCGCAGAGGTGAAAGCGTGGTCGACATTGGGGT CTACAGTAGATCGGCTACACCTGCAGCTGACAACGGTCGAGGATACCAGT CCACGACAAAAGTAACGGAGAAGAAACGATATCTTGCACAGACTCTCAAG ATACCCACGTTGACCACCACAACGTAGTTTTTTCGCCTTTTACCCCCGGG AGGGCATATTTCGCCGTCTGTCACGCGAGAATCGATCAAAACACAGGTAC AGATGTTTCTGTCAGAAATAAACAGCAAGAATTTAACGTAATGTTTTGTC TCTGCATTGAAGCATCGTACACCATCGCCCTGGTGGTCTAGCAGCAGACT TCGTGAACCTACTATCAGCGGGTGGTTAATTTGACTCTCTCTGCCGAAGC AAGCAACTGTACGTTGCCGAGACATGATATGTCTTGGGGAAGGGTCAGAC GACAACCAGAACTCCATCTTTGCATGCATAGAACACAAACATCTTGTTCA ACTGCAAAATTGCAAAGGGACTGCATACTGTAGGGGGGTAGAAACCCGGA ACGCTTGTTCCCGGTAAAGCAAACGCTTTTCTTACCACGAAGTTCTGAGC TGCGAGGATGATTGACTGCGGTTCCTTTTACTCCACTCCAACGCTCTACC TTGGTCGAACAGGATGCGCTCGACGTTGGAAATGAGGGAGCTCATCCAAG CAGGTTAACGAGGGCGGTGCTTGCGGCGTCGATGCATACTACTGAGGCTC ATTTTCTTCTCGTGGCAGACGGATTCGAAGTCGACGCCATGACAAGAGAG GCCACGGTGAAGTTAGTTTTGGTGTCATGACTGCGTTAGTAAGGGCCAAA AGAGTTCGTCAGAGTCAGGACGTTTCACAGTTTGTTTTATGCTGTTCCGT CAAGGTTGTTGTACAGGTTCTCAACGGCCGGCCATTGGAATGACGAACAT GAGAGAGAAATCGGAGACGCACATTGCTGCGTGAGAAGATTCGCCTGCTA TCCACGCGGAGTACACACACAGCAACGTATCATATGCTGGTGGAACAAAT GAATCACAAGCTTGTCTTGTCGTCTGTTCGTGCAGGAACGCGTGCTACAT GACAGAGGCTGGAAAAGTTTCACAGCTATTGAGTTGCCAGAATTCGAAGG GTTTTCATCCGGTGAGCATCCAAGCGGTAAAAAAGTGGGAACGGTTGTCC TTCAGGTTTCCCTTTTGCGTTCAGCACTGACTCGCTTGTGTAGGACCTCC TGAAAACGTGTAAATGAAGTAGAAGCATCGTACCTGAGAAGTGAAGACTA TGTGTGAAGGAGGGGATTGGGGCACAAGGTTATTTTAATTAACCTGTGCA GCCCACTGCATGAATCCACCGTATGTTCGCATGCAGACACGATAGCGAGG AGAATGAAGCCCCTATGCTAGAACACAGAGAGCCACTAAACTTGCCGTTG TTGCAACAATTAGCATCTGACGACATACTTTTGCGTAACAGATGAGCGAT GGTCCATACAACTGTTGAAAATTATCCAGAGCGAAGGGACGGGCTCTCCA ACCTGTAGTTGTCCCTGGTTTCGATCTGACCTGTGAGTGCTGCCGTTCCC ATCGGACTTTCATGTGCAGCTGTCAATCGAGCCATGAAGCTTGTACCCGG AAACTCCGTGGTGGCTATCTTGTCCACATCGGCACTCTTGCTCCCCACCA GCTCCGTGGACACCTGCACCCCAACGACCACGGATGCAGAATGTTTTGAC GATGTCGACAGCGATGCCGGCCGGGAGGGGGCAGCAAGCGACGTCTTTGT CGCCTATGAGCGACTGCAAAGCGTCGTCTCCGTTGCCATCCCACCCACGG AATCCAGCAGGATGGACTGCCCTTTTGGGTCACGAGTTGAAGCTTCAGGG AATACCCCTCCCATCGACAACAGACCAAGCCCTCCAGGCGCAGAGGGGAG GCGTAAGAACGAGGGTGATCATCTCCGCCATCGAAGCAACATAGACCGTC GAAGAGGGGGCTTGCTTGTGAGCGCCTTACCACCCCGGACGACTTCAGAT CGGCGAGGCGATCGTGATGATCACGTTCCAGCGTGGTCTAAGGGGAGCGC GCAGCAAGAGGGGCATGGTCAGGGTGTGGTCCAGGGAACAGAGACGGTTG AGTGGATACCCTCAAGATCGTCTCCGCCGGTTGCACCACCTCGCCAAGCG CCGGCTACGAGGATCAGCGATACAGCGCGTATACCTCTACTGGTGTTCGA TACCGAAACGTTTTTGGCCCTGGGGGATCTCGACGAGCGATTCTCTTTTC AGGGTGGGGTCGCTGAATGGATTAGTCGAGCACAACCGAGCAGTGCTAGT AACTGCAGATATAACAATGCTGGCCGGCACCTTGGCGCGCTCAATACAGT GCGACTAGCAACAGAATATGGGAGCGCTACCGTTTCCCCCTGTACTGGGC TCGCTGTCAAGCACGTACATGAACGCAAATGGGGTAGATTCTTTGTTAGG ACTTGGCCGGATTACAGCGCAGGCACAGCATCCCGGCGTACTGCAGGCTC TACGGAAGAGCATCGAATGGCAGAAGCACAGCATCGTAGTGCGGATCCGC TTGAAGACGGTGTTCAACGTGATAAGCGTCTTGAACAGATCTTACGACAA GGCAAAGGCGGGAATGGATTCCGTCAGCTAGAACATTCAAGGGATCCACG GGCACCAGATGAGGTCGTCATCGACAAGCGGTATCATATCTCCGCAGGGG CACTGGAGGCCTTGGTTCAAGCTGACAGTGATTTGTTTTTCTTGCCTCTG CTGCTTGAGGCCCCTTCCCCAGGTGAGATCACGTCGTGTCGGCTTCGAGG TTTTTGCATTGGGACAGAAGGACACCAACTGTGCAGGTTAGCGGGAGTGG GGGTCACTTGCATGTACATGGTGGAAATGAAGGAGGCTGGGGAATAAACT ATTTGTAACCAGTCAATGTCCTGTGTTGCTACTGAACTACAAGACGAACA TAGTGATGTAAGGTATACGGAAGCCTCATTTTCCACGGGGTTGCATGGCA TGCGGAAGTACCGGTGTCGTCTTCAACACGTCTGTTGTTGCATGGATGCG GTTGCCAACACCAAAACCGCGATGAAGGTAGAATACGAGGCAAACAAGAA CTTACTAGAGCGATAAATTAGTTCTTGGCAGCATAGAGAAAAGCAAGCGA GACAAAGGAAACGAAGGAGGAAAACCCAAGCGAGGGAGGAGATTCAAAAT CGACGTGGCGAACAACAGCCAAGACTGGTAAACATGTGCTGGCTACGTAC GACAGGGCCCCGTTCGAACGATCATACAGTGGCTACACTTTACACCAATC TACAGCCCGGCCTCCTCCTACTTTTTGCAGAGCACGATGATGCTGATTCC GTGCGGCAGTGCGTGACATTCCACGCGGAGTGGATGGAGAGAACCCCAGA CAAGGTCCTAGAGGACAATGTACTCGACAGGCGAAAGAGGTTTCCAATGG CGGTGGTGGTCGTGATACACGATGAAACCTCCCTAGTGCGTGCAGCCCTG GACGAGATTGCCATTGTGGTGGAACACATCGTGAGTGACAATGTTCATGA TTGTACGGCAAAACGGATCGTTTGCAGAGAGAGATTGCCTTGAGCGATTA TCGGTGGAGGGCTTTACTCCCGTTCAAAACCATTTTATTCAACCGCACGC ACGACGCCTTGTGGACATGGTACAGTATAACGATGCGTGATCGCTACAGA TGAGGTGTTTAACTTCCGTGTTTGGGATGGATTCCTCATCCAGTGACGAA CATGGACAGAAAAAGAGTGTCAGCGCATGCGTTGAAGGTGACGGCGTGAC AATGGCTACGATAAATGTTTCCTTACCAACAGCAACATCATCCCCAACCC TACCGCCAAACGCTTGAGATCTTGAATTCCCCGTACAGTTGGGCAAATCT TGATTAAGGCTTTCGGGGGCAAAATCAAATTATATCTCCCAGGAAAAGTC GGTACTACTGATGCAACCACCCCGTCGGCAGTACCCCGTGCCTTTGCAAT ATGACACAAGTGTTGGGGATGGTTTTCAAGCGAAGTCTCCCATCTTCTTG TGAACCAGCGCATTTAACGTTCGATTCAAGCTGAGATTATGGGTGTTTGT TGCAGATCAGCCCGCCCACTAATTGGAAATTGCCTCAATGTCGCACACGA GGAACGCTTCATACCAAATTAGCCGTTGTTATGTTTGATTTGTACAACGT TTGAAGTAGTATATGCATAGCTCTTTGGCAAGAGACCATAGCACGCAACC CCCTAGAGCCATCCATCACGAATACACCTCTTGGGCTGCATGCGCTTATA TACCACACCATAAAGATGTACTGCCTAGTTTTTGCATTGAAGCGTATGCA TGTGAGTCCTTCGTGGAAGCTTCCCTCCTAACCTCCTTCGCCCACCATCC GCTGAACAGCTCATCTTGGTTAGCTTGCAATCTTGGCACGGGGGCGGCAA GGATACATCCCCGACGCTGGAACTCCTGAACGATATGTTGGAGGACGCGG AATCTCCTTCTTTCGGCAAGGTTTGTGATATGTCCGTGCCCGTTTCCGCT TCGCGTTGCTACGTGGTCGAGCTTCGGTCGTACGCATGCATGTCCTTCAA TGCTACCATCTGTGACAAGTTACAGGTGGAGCCTAAACGCACCAGAACTG GAAGCAGCCTGCGCTTGTGGAGACAAGTCCGGTGGAAAGCACCCGTCTGT GACCATACCAGTTGCGTGCTCCGGCGAATACTGAAGAACAAATGATACAA TCAAACAAGTAATAGAGTTAAGGCTGGCGTTTGTTCGTACCATGTGTTGA GTTGCAGCTCCAGGTGGAGGTTGGTTCCTGGGCTACCGAGCGCGAACAAA GACAGCACGGGGATTCCCTCATCAAAAAAGACCCCAGGTGAGGGAAAAAC CAACATCCTCTGCGGGGGCAATTTTGGTCCGGTTCCCCTGCCCCAAGGTG CAGGGATCCGGTCGCGCTCCGCCCGGCTGTTTGTTTTCGTTTGGTGGTGG TCTGATCGATCACACAAGCATCCTGCACGCCTGCTTGTCATTCCTCGAGT CTGGTATTGCCGAAATGCTTGAGCTACACCGCTCAAGCATTGTGTGAGTT CTACCCGATAGCCTTGCTTCAGTTCGCCGCTGTCATCTCTTTTCAAGAAC ACAAGCAATACTAGGCTCGAATAGCAAGCTGTGACCAACATCCGAAATGT TTAGTCTGGCGAACCCTCCCGTTCCGTGCGAAATATCTGAGTTCTGCCTG TCTGTGCCATCCTGCACCATTTTCCTTGAGGCGTGTTTGCCCTTTTTGTC GTTTCCCCGGGCTCGAGCAGAGATTTCTTCCGGGTGGTTGTGATGAACGG GGACGAGTTCTGGCACCCTGTGGAACTTGCAAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1360:9336..17622+

>mRNA_Ecto-sp13_S_contig1360.2849.1 ID=mRNA_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:9336..17622+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGAGAGCGGCAGTTCGGCACGCCCTCAAACGGGTTCTGTGGGT
GTCTTCGTTTTTAATACTGCAAGGGCTCGCCACCGGGCGACTACACTCTC
CAAACGTATCCGTGAACTTCGACGTTGAAAATGAGCTGTACCGAGAACTT
CCTCTGGCTGTGCTGCGGGTGACCTCGGCCAATGGTGGTGGAGCTCCTCC
TATGTCGGATCTGGCTATTTTCGCCGAAGATCCTCAGTGGGCGTGCAAGG
TTGAAAGGTTCATGGTCCAGACGGGGGCGGACCGTCATGGTGTTGAAAAT
GCTTTGGACCAAGTGCGCAATGTGTCGTGGGAATCTGGGCGGACGCTACG
AGGGAAGTATTTGGTGCTGCTCGCTTTCGCAGAGGATGCGCTCGACGTTG
GAAATGAGGGAGCTCATCCAAGCAGGTTAACGAGGGCGGTGCTTGCGGCG
TCGATGCATACTACTGAGGCTCATTTTCTTCTCGTGGCAGACGGATTCGA
AGTCGACGCCATGACAAGAGAGGCCACGATCTTACGACAAGGCAAAGGCG
GGAATGGATTCCGTCAGCTAGAACATTCAAGGGATCCACGGGCACCAGAT
GAGGTCGTCATCGACAAGCGGTATCATATCTCCGCAGGGGCACTGGAGGC
CTTGGTTCAAGCTGACAGTGATTTGTTTTTCTTGCCTCTGCTGCTTGAGG
CCCCTTCCCCAGAGCACGATGATGCTGATTCCGTGCGGCAGTGCGTGACA
TTCCACGCGGAGTGGATGGAGAGAACCCCAGACAAGGTCCTAGAGGACAA
TGTACTCGACAGGCGAAAGAGGTTTCCAATGGCGGTGGTGGTCGTGATAC
ACGATGAAACCTCCCTAGTGCGTGCAGCCCTGGACGAGATTGCCATTGTG
GTGGAACACATCCTCATCTTGGTTAGCTTGCAATCTTGGCACGGGGGCGG
CAAGGATACATCCCCGACGCTGGAACTCCTGAACGATATGTTGGAGGACG
CGGAATCTCCTTCTTTCGGCAAGCTCCAGGTGGAGGTTGGTTCCTGGGCT
ACCGAGCGCGAACAAAGACAGCACGGGGATTCCCTCATCAAAAAAGACCC
CAGCAGAGATTTCTTCCGGGTGGTTGTGATGAACGGGGACGAGTTCTGGC
ACCCTGTGGAACTTGCAAAGTGA
back to top