mRNA_Ecto-sp13_S_contig1360.2849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI) HSP 1 Score: 704 bits (1818), Expect = 1.110e-249 Identity = 356/390 (91.28%), Postives = 370/390 (94.87%), Query Frame = 1
Query: 1 MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYRELPLAVLRVTSANGGGAPPMSDLAIFAEDPQWACKVERFMVQTGADRHGVENALDQVRNVSWESGRTLRGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFEVDAMTREATILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
MTSR A+RHALKR+L VSS L LQGLATGRLHSPNVSVNFDVENE YRELPLAVLRVT ANGGGAPP+SDLA+FAEDP WACKVERFMVQ GADRHGVENALDQVR+VSWESGRTL GKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAAS HT EAHFLLVADGFE+DAMTREATILRQGKGG+GFRQLE+SRDP APDEVVIDKR IS ALEALVQADSDLFFLPLLLEAPSPEHDDADSVR+C+ FH+EWMERTPDKVLEDNVLDRRKRFP+AVVVVIHDE SLVRAALDE+AIVVEHILILVSLQSWHG GKDTSPTLELLNDMLEDA+SPSFGKLQVEVGSWATEREQRQHGDSLIKKDP RDFFRVVVMNGDEFWHPVELAK
Sbjct: 1 MTSRVALRHALKRLLCVSSIL-LQGLATGRLHSPNVSVNFDVENEHYRELPLAVLRVTPANGGGAPPVSDLAVFAEDPNWACKVERFMVQAGADRHGVENALDQVRHVSWESGRTLLGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASTHTAEAHFLLVADGFELDAMTREATILRQGKGGDGFRQLEYSRDPPAPDEVVIDKRNQISPEALEALVQADSDLFFLPLLLEAPSPEHDDADSVRRCMIFHSEWMERTPDKVLEDNVLDRRKRFPVAVVVVIHDENSLVRAALDEVAIVVEHILILVSLQSWHGAGKDTSPTLELLNDMLEDADSPSFGKLQVEVGSWATEREQRQHGDSLIKKDP-RDFFRVVVMNGDEFWHPVELAK 388
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE) HSP 1 Score: 286 bits (731), Expect = 1.270e-84 Identity = 224/625 (35.84%), Postives = 232/625 (37.12%), Query Frame = 1
Query: 262 MVQTGADRHGVENALDQVRNVSWESGRTLRGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFEVDAMTREAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDP 1101
MVQTGADRHGVENALDQVR+VSWESGRTLRGKYLVLLAFAEDA DVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFE+DA TREAT ILRQGKGG+GFRQLE+SRDP APDEVVIDKR IS ALEALVQADSDLFFLPLLLEAPSPEHDD DSVR+C+TFH+EWM RTPDKVLEDNVLDRRKRFP+AVVVVIHDETSLVRAALDEIAIVVEHI VEVGSWATEREQRQHGDSLIKKDP
Sbjct: 1 MVQTGADRHGVENALDQVRHVSWESGRTLRGKYLVLLAFAEDAPDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFELDATTREATVRTFHTVNRAMKIVPGNSVVAILSTSTLLLPTSSVDTCIPTTKDAECFDDVDSDAGREGAASDVFVAYERLKSVVSVAIPPTESSRMDCPYGSPVEATGNTPPNDNRPSPTGAEGRRKNEGDHLRHRSNIDRQRGGLLVTALPPRTTSDRRGDRDGHVSAWSQGGAQHEGHGQGVAQETETAEWIPSRSSPPLAPPREPPATRISDTARIPLLVFDTETFLALGDLDERFSFQGGVAEWISRAQPSSASGCRYSNAGRHLGALSTVRPATEYGSATASPCTGFAVKHVHERKWGRLFVRTWPGYGAGTASQRTAGSTDEHRMGEAQHRTTDPLEDGVQRDKPLEQILRQGKGGDGFRQLEYSRDPPAPDEVVIDKRNQISPEALEALVQADSDLFFLPLLLEAPSPEHDDTDSVRRCMTFHSEWMGRTPDKVLEDNVLDRRKRFPVAVVVVIHDETSLVRAALDEIAIVVEHI---------------------------------------VEVGSWATEREQRQHGDSLIKKDP 586
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI) HSP 1 Score: 250 bits (638), Expect = 6.980e-71 Identity = 125/218 (57.34%), Postives = 166/218 (76.15%), Query Frame = 1
Query: 526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPE---HDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
T+ RQG G + FR+ + DP A EVVID+ + + LE LVQ+D+DLFFLPLLL PS E + + D C++FH+EWM R+P++ L LDRRKRFP+AVVVV+HD+ SL+RA L+E+A VVEHIL++VS++ WHG D SPTL +L ML+DA+SP+ GKL+VEVGSWATEREQR++G+++IK+D R+F RVVV++ DEFWHPVELAK
Sbjct: 562 TLQRQGGGEDEFRRRDGFEDPHATGEVVIDQWHGLPPAKLEDLVQSDADLFFLPLLLWEPSSEAVPNGEKDPKELCLSFHSEWMGRSPNERLAREALDRRKRFPVAVVVVVHDDISLMRAVLEEVAAVVEHILVVVSVRPWHGSATDVSPTLRMLECMLQDADSPTRGKLRVEVGSWATEREQREYGNAIIKED-IRNFSRVVVLDTDEFWHPVELAK 778
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE) HSP 1 Score: 234 bits (597), Expect = 2.590e-65 Identity = 119/218 (54.59%), Postives = 160/218 (73.39%), Query Frame = 1
Query: 526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPE---HDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
T +G G + FR+ + D A EVVID+ + + LE LVQAD+DLFFLPLLL PS E + + D C++FH+EWM R+P+K L L+RRKRFP+AVVVV+HD+ SL+RA L+E+A VVEHIL++VS++ WH D SPTL +L ML+DA+SP+ GKL+VEVGSWATE QR++G++LI++D R+F RVVV++ DEFWHPVEL+K
Sbjct: 524 TFQHEGGGEDEFRRRDGFEDLHASGEVVIDQWHGLPPAKLEDLVQADADLFFLPLLLWEPSSEGAPNGEKDPKELCISFHSEWMGRSPNKRLAREALERRKRFPVAVVVVVHDDISLMRAVLEEVAAVVEHILVVVSVRPWHESATDVSPTLRMLECMLQDADSPTRGKLRVEVGSWATEPAQREYGNALIREDV-RNFSRVVVIDTDEFWHPVELSK 740
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.860e-49 Identity = 103/215 (47.91%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 526 TILRQGKGGNGFRQLEHSRDPRAPDEVVIDKRYHISAGALEALVQADSDLFFLPLLLEAPSPEHDDADSVRQCVTFHAEWMERTPDKVLEDNVLDRRKRFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
T+L G+G +Q D A DEV +D+R + LEAL+QAD+DLFFL LLL P D D + + FH+EWMER PD VL VLDRRKRFP+A VVV++++ S++RA+L+E+A+VVEHI+ ++ L +LQVEVGSWATE EQR++G+ LI++DP R FFRVVVM+ DEFWHP ELAK
Sbjct: 383 TVLSNCISGDGIQQPTDFADRHACDEVSLDQRNSLHWAKLEALIQADADLFFLRLLL-VEQPSVDKVDPAQLSIAFHSEWMERAPDTVLAQGVLDRRKRFPVAAVVVVNEDISILRASLEEVAVVVEHIMSILPLME---------------------------RQLQVEVGSWATETEQREYGNLLIREDP-RHFFRVVVMDTDEFWHPAELAK 568
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A6H5JEI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI6_9PHAE) HSP 1 Score: 138 bits (348), Expect = 8.950e-37 Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 1
Query: 1 MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYRELPLAVLRVTSANGGGAPPMSDLAIFAEDPQWACKV 252
MTSRAA RHALKR+L VSSFL+L+GLA RLHSPNVSVNFDVENE Y ELPLAVLRVT ANG GAPP+SDLAIFAEDP+WA KV
Sbjct: 2 MTSRAAFRHALKRLLCVSSFLLLRGLAITRLHSPNVSVNFDVENEQYPELPLAVLRVTPANGAGAPPVSDLAIFAEDPKWAWKV 85
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Match: A0A7S2LSU5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSU5_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.220e-9 Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 1
Query: 820 RFPMAVVVVIHDETSLVRAALDEIAIVVEHILILVSLQSWHGGGKDTSPTLELLNDMLEDAESPSFGKLQVEVGSWATEREQRQHGDSLIKKDPSRDFFRVVVMNGDEFWHPVELAK 1170
+F + V ++D+T + LD I + H++IL+S W+G + T TL L A GK+ + G+W++E +QR G+ + D+ V+V++GDEFWHPV L +
Sbjct: 396 KFRVCAVFCVYDDTRFLEILLDSILPSIHHVVILLSSTPWNGEKRSTKHTL--LAAQRVAASDVGQGKVSIITGAWSSESDQRNFGNDFARM-LGADY--VMVIDGDEFWHPVHLER 507 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1360.2849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1360.2849.1 >prot_Ecto-sp13_S_contig1360.2849.1 ID=prot_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp MTSRAAVRHALKRVLWVSSFLILQGLATGRLHSPNVSVNFDVENELYRELback to top mRNA from alignment at Ecto-sp13_S_contig1360:9336..17622+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1360.2849.1 ID=mRNA_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:9336..17622+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1360:9336..17622+ >mRNA_Ecto-sp13_S_contig1360.2849.1 ID=mRNA_Ecto-sp13_S_contig1360.2849.1|Name=mRNA_Ecto-sp13_S_contig1360.2849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:9336..17622+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |