mRNA_Ecto-sp13_S_contig1360.2848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1360.2848.1
Unique NamemRNA_Ecto-sp13_S_contig1360.2848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE)

HSP 1 Score: 1331 bits (3445), Expect = 0.000e+0
Identity = 698/841 (83.00%), Postives = 735/841 (87.40%), Query Frame = 1
Query:    1 MGVISTHPAILLLILSFGQSRGSIDVRFIAPTAAFEGERFVSSFSEYQTTEDRRSYLQAAREQGYTCSMLEQNYQDAFALFCAKTPTATYTDIPKSAEGLRATLANVSLRAWLPSLLCPPRMTDELRFNNDEYDETIDRKACREAVEEALATQPFVEATLVHDDQKTVMRATVDEVPWLTVLQNFVGPRVASNFHPLDCSMASIALASERAKIQLLPALRALAGQNLFLSSTATIANAALDGVGDKNSVSSRSIATMKQVSSSPGPDGEDESPTTNESVFATNRQPSSSVSSSAMPSAGRIESLLALLGGRNERSGMVMTPPFLHMKHPIPRGRVSGGVVKFAVEVFLGAALRTSLLAAATSNDGSSSSVNTAGIESGYRRVGGDNGMKPQLSDYDQCVIRAVVDGSISSTIPVDTADVFNNDGEAAVVMQTAIIPTYDQNPHCSEHPAKALAGWSAWAQDEDVWRVDARAVDRVCTREAFGAHHIHGELACRR---STSTVTERPTTPIVQGNVYEREWGSSAPSPRMESNIEGPAWEVLATSAMVEYFHTGHLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNPLFDSPPEEISVSLSLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEALGALSRDGGDRVEKICEV---------------------GFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASR 2451
            MGVISTHPAILLLI+S GQSRG+IDVRFIAP+AAFEGERFVS F EYQTTEDRRSYLQAAREQGYTCSMLE NYQ+A  LFCAKTPT TYTD+PKSA+GLRATLANVSLRAWLPSLLCP RMTDEL  +N++YD+TID KAC EAVEEALATQ F EATLV+D +K VMRATVDEVPWL VLQNFVGPRVASNFHPLDCSMASIALASE AKIQLLPALR LAGQN  LSSTATIAN ALDG G KNSVSSRSIA MKQ SSSP PD E ESPTTN+S+FATNRQ  SSVSSSAMPSAGRIESLLALLGG +ERSGM +TPPFLHMKHP+P+GRVSGGVVKFAVEVFLGAALRTSLLAAAT+NDGSSSS       SGYRRVGGD GM+P LSDYD+CVIRAVVDGS SSTIP+DTADVFNNDGE AVVMQTAIIPTYDQNP CSEHPAKA AGWSAWAQ+EDVWRVDARAVDRVCTREAFGAHHIHGELACRR         +  T PIVQGN  E E GSSAPSPR+ESN+E PAWEVLATSAMVEYFHTGHLAD+LSSSPW APSGGE RD+KG++  DGSKVSNPLFDSPPEEISV+L LESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKA GPF+G LVNVNDCVDLVTSAI AKRVDLFNIMSQ L AYLRSV PSYNFEGHTGGF QKVEALGAL RDGGDRV+KICEV                     GFNAGHSSLNWLLHSHPSTKILAFDLGEH+YMKHALDY+Q        VLIGDSSVTIPAYVVAE+AAGR+PQACNILFVDGDHSE GAYADLVNFRVLASR
Sbjct:    1 MGVISTHPAILLLIISLGQSRGNIDVRFIAPSAAFEGERFVSFFREYQTTEDRRSYLQAAREQGYTCSMLEHNYQEAVGLFCAKTPTTTYTDVPKSAKGLRATLANVSLRAWLPSLLCPTRMTDELSVDNNDYDDTIDHKACCEAVEEALATQLFAEATLVYDGEKNVMRATVDEVPWLKVLQNFVGPRVASNFHPLDCSMASIALASEHAKIQLLPALRTLAGQNQPLSSTATIANVALDGAGGKNSVSSRSIAIMKQFSSSPVPDEEIESPTTNDSIFATNRQALSSVSSSAMPSAGRIESLLALLGGGHERSGMGITPPFLHMKHPMPQGRVSGGVVKFAVEVFLGAALRTSLLAAATTNDGSSSSG------SGYRRVGGDKGMEPPLSDYDRCVIRAVVDGSTSSTIPIDTADVFNNDGETAVVMQTAIIPTYDQNPRCSEHPAKASAGWSAWAQNEDVWRVDARAVDRVCTREAFGAHHIHGELACRRYQHGYGKPNQLRTEPIVQGNANEGERGSSAPSPRLESNMEAPAWEVLATSAMVEYFHTGHLADILSSSPWVAPSGGESRDNKGKHKSDGSKVSNPLFDSPPEEISVTLYLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKAFGPFQGYLVNVNDCVDLVTSAITAKRVDLFNIMSQPLIAYLRSVCPSYNFEGHTGGFLQKVEALGALWRDGGDRVKKICEVNEEPSFLMRFDLGDLIFGIKVGFNAGHSSLNWLLHSHPSTKILAFDLGEHQYMKHALDYMQ--------VLIGDSSVTIPAYVVAEDAAGREPQACNILFVDGDHSEGGAYADLVNFRVLASR 827          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: D7FK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK45_ECTSI)

HSP 1 Score: 816 bits (2108), Expect = 7.550e-287
Identity = 470/811 (57.95%), Postives = 515/811 (63.50%), Query Frame = 1
Query:   19 HPAILLLILSFGQSRGSIDVRFIAPTAAFEGERFVSSFSEYQTTEDRRSYLQAAREQGYTCSMLEQNYQDAFALFCAKTPTATYTDIPKSAEGLRATLANVSLRAWLPSLLCPPRMTDELRFNNDEYDETIDRKACREAVEEALATQPFVEATLVHDDQKTVMRATVDEVPWLTVLQNFVGPRVASNFHPLDCSMASIALASERAKIQLLPALRALAGQNLFLSSTATIANAALDGVGDKNSVSSRSIATMKQVSSSPGPDGEDESPTTNESVFATNRQPSSSVSSSAMPSAGRIESLLALLGGRNERSGMVMTPPFLHMKHPIPRGRVSGGVVKFAVEVFLGAALRTSLLAAATSNDGSSSSVNTAGIESGYRRVGGDNGMKPQLSDYDQCVIRAVVDGSISSTIPVDTADVFNNDGEAAVVMQTAIIPTYDQNPHCSEHPAKALAGWSAWAQDEDVWRVDARAVDRVCTREAFGAHHIHGELACRRSTSTVTERPTTPIVQGNVYEREWGSSAPSPRMESNIEGPAWEVLATSAMVEYFHTGHLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNPLFDSPPEEISVSLSLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEALGALSRDGGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASR 2451
            HPAILLLILS  ++ G+ID RFIAP+ A EGERFVSSF E QTTEDRRSYLQAARE+GYTCSML +NY  A ALFCAK                                                        ACR AVEEALATQPF E TLVHDDQ  V+RATVDE PWL VLQ+F+ P  A+NFHP DCS+AS ALA  RAK Q+LPALRALAG++   SSTAT AN  ++GVG   SV SR IA MK  SS P P GE+ S TT ESV A N QPSSS SSSAMP AGRI +LLALL   NERSGMV TPPFL MKHP  + RVSGGVV   +EV LGA LRTSLLAAAT+NDGSSS V+TAGIESGYR VG D      L+DYD+CVIRAVVDG  SS+ P+D  DVFNNDGEAAVVMQ  I+PTYD NPHCSEHPA+ALAGWSAWAQDEDVWR+DARAVDRVCT+EAFGAHHIHGELA                                                                                                                                       AF TCSKA GPF GILVNVNDCVDLVTS I AKRVDLFN MS RLTAYLRS+ P+Y   GHTG FPQKVEALGA+ RDGGDRVEKICEVGFNAGHSSLNWLL+S PSTK+LAFDLGE+EYM+HALD+LQ +FPGRLEVLIG S+VTIPAY V EEAAGR  + CN+LFVDGDH+E+GAYADL+NFR LASR
Sbjct:   29 HPAILLLILSVARA-GNIDARFIAPSEALEGERFVSSFGEDQTTEDRRSYLQAARERGYTCSMLPKNYPSAVALFCAK--------------------------------------------------------ACRGAVEEALATQPFAEVTLVHDDQAAVIRATVDEEPWLKVLQSFMEPSFAANFHPSDCSVASSALAFGRAKTQVLPALRALAGRSQSFSSTATTANTTMNGVGGTASVFSRRIAAMKPFSSLPVPAGEEASSTTKESVVAKNTQPSSSASSSAMPHAGRIANLLALLDDGNERSGMVKTPPFLRMKHPSLQERVSGGVVNVVIEVVLGAVLRTSLLAAATTNDGSSSRVDTAGIESGYRSVGEDK----SLADYDRCVIRAVVDGMTSSSTPIDIEDVFNNDGEAAVVMQMDIVPTYDHNPHCSEHPARALAGWSAWAQDEDVWRLDARAVDRVCTQEAFGAHHIHGELA---------------------------------------------------------------------------------------------------------------------------------------AFDTCSKAFGPFHGILVNVNDCVDLVTSVITAKRVDLFNTMSLRLTAYLRSIRPNYLILGHTGAFPQKVEALGAVLRDGGDRVEKICEVGFNAGHSSLNWLLNSRPSTKVLAFDLGEYEYMRHALDFLQMVFPGRLEVLIGHSTVTIPAYAVVEEAAGRDTRTCNVLFVDGDHTEEGAYADLINFRALASR 643          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: D7FK26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK26_ECTSI)

HSP 1 Score: 521 bits (1343), Expect = 6.410e-177
Identity = 256/288 (88.89%), Postives = 271/288 (94.10%), Query Frame = 1
Query: 1588 IEGPAWEVLATSAMVEYFHTGHLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNPLFDSPPEEISVSLSLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEALGALSRDGGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASR 2451
            +EGPAWEVLATSA V+YFHTGHL DVLSSSPW APSGGE  D+KG  N DGS VSNPLF+SPPEE+SVSL LESDP ET VVVAVPRWLSDGE+WEAAFGTCSKA GPF+GILVNVNDCVDLVTSAI AKRVDLFNIMS+RLTAYLRSVSPSYNFEGHTGGFP+KVEALGA+SRDGGDRV+KICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYM+HALD+LQAMFPGRLEVLIGDSSVTIPAYVVAE AAGR+PQ CNILFVDGDHSEDGAYADLVNFR +ASR
Sbjct:    1 MEGPAWEVLATSATVQYFHTGHLTDVLSSSPWVAPSGGESHDNKGAENSDGSTVSNPLFESPPEEVSVSLYLESDP-ETLVVVAVPRWLSDGEIWEAAFGTCSKAFGPFQGILVNVNDCVDLVTSAIKAKRVDLFNIMSRRLTAYLRSVSPSYNFEGHTGGFPRKVEALGAVSRDGGDRVKKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMRHALDFLQAMFPGRLEVLIGDSSVTIPAYVVAEAAAGREPQGCNILFVDGDHSEDGAYADLVNFRAMASR 287          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A6H5K0Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q1_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 4.010e-163
Identity = 359/925 (38.81%), Postives = 481/925 (52.00%), Query Frame = 1
Query:  115 RFVSSFSEYQTTEDRRSYLQAAREQGYTCSMLEQNYQDAFALFCAKTPTATYTDIPKSAEGLRATLANVSLRAWLPSLLCPPRMTDELRFNND--------EYDETIDRKACREAVEEALATQP-FVEATLVHDDQKTVMRATVDEVPWLTVLQNFVGPRVASNFH-----PLDCSMASIALASERAKIQLLPALRALAGQNLFLSSTATIANAALDGVGDKNSVSSRSIATMKQVSSSPGPDGEDESPTTNESVFATNRQPSSSVSSSAMPSAGRIESLLALLGGRNERSGMVMTPPFLHMKHPIPRGRVSGGVVKFAVEVFLGAALRTSLLA---------AATSNDGSSSSVNTAGIESGYRRVGGDNGMKPQLSDYDQCVIRAVVDGSISSTIPV----------DTADVFNND-----------------------GEAAV-VMQTAIIPTYDQNPHCSEHPAKA--------LAGWS--AWAQDEDVWRVDARAVDRVCTREAFGAHHIHGELACRRSTSTVTERPTTPIVQGNVYEREWGSSAPSPRMESNIEGPAWEVLATSAMVEYFHTGHLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNPLFDSPPEEISVSLSLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNF-EGHTGGFPQKVEALGALSRDGGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASRDWNVLAIDDLESPPVEAAWRRFREEDGGGRLERVVMASGEHYAHAQEN--GNGAWDVHEDNDYHKYFMRRGHLSLGIG 2679
            R V S  ++ ++ +RR+ L    E+G TC ++ Q +  A  +  A      +T +P +A+ LR  L +V+LR WLP+LLC    T       +        +  E   R+ C E VE AL+     V   +     +  + AT+D++PWL  ++  +      ++H     PLDC +  I LASER   QL PAL+ L  Q    +       A   G   K S S  +IA +  +                             V   +  S G  +      GGR   S      PF+ +  P+   RV+GG V F  EV+LG AL   LL          AA+SN       +T  +E    R  G +  +P    + +C +RAVVDG +++ IP+           TA+  +                         G+A   +++ A+IP Y +   CS+HP  A        +AG +  +W   ED+W ++AR VDRVCTREAFG H + GELAC  S              G+  +RE G+SA              EV A SA  EY HTGHLADVLSSS W     G    S G  +G+      P FD PPEEISVS+ +E+ PD    V+AVPRW SDG+VW  AF TCS+A GP +G L+NVNDCV+L+T+ ++AKR DLF  ++ R+ AY  SV       EGHT   P+KVEALGA+ RDG              GHSSLNWLL+SHPST++LAFDLG H+Y+  A D+LQA+FPGRLE+++GDSS T+PA+  A+ AAGR P+ C+++FVDGDHSE+G YADLVNF    +R WN  A+DDL+ P V  AWRRF   +G GRLERVV+AS E YA AQEN  G G+WDV  D   H+ FMR G  SLGIG
Sbjct:   25 RHVMSIRDFASSTERRARLLREHEKGNTCWLVGQYFLHAVCIENA----VDHTVVPATAQDLRKVLYSVNLRTWLPNLLCSSPTTTTSTGAGETIASAGPVDDGERTGRRRCEETVEAALSVPVGSVSGRMQSSTTELEIHATIDDIPWLQTMEKCLDQM---SYHTDFLLPLDCQVMYIVLASERGNAQLRPALQDLWRQQQHAAELGR--QAVASGEVSKISPSVETIAGLLSLLD---------------------------VDVKSEDSDGSSD------GGRRASS----EEPFVKVLAPVDATRVNGGAVPFIAEVYLGGALEERLLEVRNGRRREDAASSNLVGGHETSTGRVE---ERGPGHSSWRPP---FHRCEVRAVVDGVVTTRIPIYEEGDGDVPTATANTSSEKXXXXXXXXXXXXXXXXXXXXXKAGKATSHIIRRAVIPDYGRQ-RCSDHPRAAATLATTAGVAGVARDSWGNYEDMWLIEARQVDRVCTREAFGPHRMQGELACCFSDG------------GHAGDRETGASAGK---------ETCEVQAISAPFEYHHTGHLADVLSSS-WAEQERGFVSGS-GTASGESGPGGLP-FDPPPEEISVSVYVETAPDAAAAVMAVPRWSSDGDVWMEAFRTCSEAFGPSQGFLINVNDCVNLITTVVSAKRADLFRRLALRMDAYGISVHRGDEVVEGHTARCPEKVEALGAMPRDG--------------GHSSLNWLLNSHPSTRVLAFDLGMHQYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGDHSEEGTYADLVNFAAKTNRRWNAFALDDLDIPSVTTAWRRFSMGEGKGRLERVVLASAESYAQAQENKGGGGSWDVTFDTAGHRNFMRGGFYSLGIG 858          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: D8LQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ26_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 3.660e-132
Identity = 290/723 (40.11%), Postives = 382/723 (52.84%), Query Frame = 1
Query:  505 MRATVDEVPWLTVLQNFVGPRVASNFH-----PLDCSMASIALASERAKIQLLPALRALAGQNLFLSSTATIANAALDGVGDKNSVSSRSIATMKQVSSSPGPDGEDESPTTNESVFATNRQPSSSVSSSAMPSAGRIESLLALL--------------GGRNERSGMVMTPPFLHMKHPIPRGRVSGGVVKFAVEVFLGAALRTSLLAAATSN---DGSSSSVNTAGIESGYRRVGGDNGMKPQLSDYDQCVIRAVVDGSISSTIPV----------DTADVFNND-------------------------GEAAV-VMQTAIIPTYDQNPHCSEHPAKA--------LAGWS--AWAQDEDVWRVDARAVDRVCTREAFGAHHIHGELACRRSTSTVTERPTTPIVQGNVYEREWGSSAPSPRMESNIEGPAWEVLATSAMVEYFHTGHLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNP-----LFDSPPEEISVSLSLESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPS-YNFEGHTGGFPQKVEALGALSRDGGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASR 2451
            + AT+D++PW+  ++  +      ++H     PLDC    + LASER K+QL PAL+ L  Q          A            +  R++A   +VS S                                PSA  I SLL+LL              GGR   S      PF+ +  P+   RV+GG V +  EV+LG AL   LL         DG+SS+       S  R      G  P L  + +C +RAVVDG +++ IP+           TAD  +                           G+A    ++ A+IP Y   P CS+HP  A        +AG +  +W   ED+W ++AR VDRVCTREAFG H + GELAC  S               +  +RE G+          +E    +V A SA VEY HTGHLADVLSSS W           +G  +G G+    P     LFD PPEEISVS+ +E+ PD    V+AVPRW SDG+VW  AF TCS+A GP +G L+NVNDCV+L+T+ ++AKR DLF  ++ R+ AY  SV     + EGHT   P+KVEALGA+ RDGGDRV  ICEVGFNAGHSSLNWLL+SHPST++LAFDLG HEY+  A D+LQA+FPGRLE+++GDSS T+PA+  A+ AAGR P+ C+++FVDG+HSE+G YADLVNF    +R
Sbjct:   44 LSATIDDIPWVQTMEKCLDQM---SYHTDFLLPLDCQGMYVVLASERGKLQLRPALQDLWRQQXXXXXXXHAAE-----------LGRRAVA-FGEVSVS-----------------------------KLSPSAEIIASLLSLLDVDIKNEDSDRSSDGGRRASS----EEPFVKVLAPVDAARVNGGAVPYFAEVYLGEALEERLLEVRHGRRREDGASSNPVGGHEPSSGRGKERGPGHSPWLPPFHRCEVRAVVDGVVTTRIPIYEDGDGDVTTATADASSEKXXXXXXXXXXXXXXXXXXXXKRKRAGKATSHTIRRAVIPDYG-TPRCSDHPRAAATLAATAGVAGTAGASWGNYEDMWLIEARQVDRVCTREAFGPHRMQGELACCFSDGA------------HAADRETGA----------VE--TCQVHAISAPVEYHHTGHLADVLSSS-WA-------EQERGFVSGSGAGSGEPGPSGLLFDPPPEEISVSVYVETAPDAASAVMAVPRWSSDGDVWLEAFRTCSEAFGPSQGFLINVNDCVNLITTVVSAKRADLFRRLALRMDAYGISVHRGDEDVEGHTARSPEKVEALGAMPRDGGDRVRTICEVGFNAGHSSLNWLLNSHPSTRVLAFDLGTHEYVGAARDFLQAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGNHSEEGTYADLVNFAAKTNR 685          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A8J2SDJ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDJ9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.490e-25
Identity = 79/235 (33.62%), Postives = 118/235 (50.21%), Query Frame = 1
Query: 1924 LVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEA----LGALSRD-GGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFP-GRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASRDWNVLAIDDLESPPVEAAWRRFREEDGGGRLERVVMASG-EHYAHAQENGNGA 2607
            ++ +    + V +     R++L   + +R          +  FEG T  +P K+ A    LG + RD    +  ++CEVGFNAGHS+L WL+ + P  ++ AFDLG H Y  H   +  A F  GR++V  GDS  T+PA+  A  +    P+ C+++FVDGDH    A ADL N R  A    +VL +DD +   V  AWR              ++A G EH+    E+ +GA
Sbjct:  187 IIRLRGAHNAVPAGFGQMRIELEEYLQERFECPAGETCVAL-FEGGTYSYPFKLHAMRNLLGHVLRDRAASKHVEVCEVGFNAGHSTLLWLM-ADPRVRVRAFDLGIHWYSPHVTGFFDAAFDAGRVDVTFGDSQQTLPAFAAAFNST-EPPEFCDLIFVDGDHHYAAALADLRNLRAAARPGHHVLLMDDPDHDEVGRAWR-------------TMLADGVEHFGDVYEDAHGA 405          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A7S4E5N2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5N2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.530e-24
Identity = 77/214 (35.98%), Postives = 113/214 (52.80%), Query Frame = 1
Query: 1870 WEAAFGTCSKASGPFRGILVNVNDCVDLVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEALGALSRDGGD--RVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLASRDWNVLAIDDLESPPVEAA 2505
            W A     ++A+        NV++       A AA+R     +++  L A+LRSV      EGH+   P+ V  + A++R   +  ++ ++CEVGFNAGHS+LNWL  + P T + AFDLG H     A  YL   +PGRL + +GDS  T+P    A+        AC+++F+DG H  D   ADL N   LA+R   +L +D+    PV AA
Sbjct:    7 WLALACGAARAADVVETCAWNVHEATCAGPRAYAAQRAYYDEVVA--LDAHLRSVGAP-PAEGHSAMCPRAVAHMRAVARAAAETSQLVRVCEVGFNAGHSALNWLA-ADPRTAVDAFDLGAHPSAAAAFAYLSKKYPGRLRLTLGDSRATLPLVDHAK--------ACDVVFIDGGHDGDVPAADLGNLAPLAARGAPLL-VDNANMAPVRAA 207          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A7J6QD78_PEROL (Anaphase-promoting complex subunit 11 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QD78_PEROL)

HSP 1 Score: 106 bits (265), Expect = 7.480e-21
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 2125 VEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQA-CNILFVDGDHSEDGAYADLVNFRVLAS-RDWNVLAIDDLESPPVEAAWRRFREEDGGGRLERVV 2556
            +  ICE GFNAGHS+  +L+ ++PS +++ FDLG+ EY  H L     +FP R E ++GDS   +P  +       + P   C+++FVDG H+ +GAY D+ NF  +A+ R+W  L  DD     V  AW+R ++E  GG+    V
Sbjct:   76 INTICETGFNAGHSAAVFLI-ANPSARVITFDLGQFEYTMHNLRLAAQLFPNRFEYVLGDSYYALPDII------DKYPDLRCDLVFVDGSHTAEGAYNDIKNFHKIANCRNW--LLADDTGFKEVNTAWQRAKDEGQGGKATSYV 212          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A7S2VQM3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VQM3_9DINO)

HSP 1 Score: 102 bits (254), Expect = 1.320e-20
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 2116 GDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHSEDGAYADLVNFRVLAS-RDWNVLAIDDLESPPVEAAWRRFREE 2526
            G  V  ICEVGFNAGHSS  +L +++P   + +FD+G+  Y +     ++ +FP R E ++G S   +P +  A     R    C+++ VDGDHS +G +ADL NFR LAS R+W  + +DD       +AW+R ++E
Sbjct:   53 GPTVRNICEVGFNAGHSSAVFL-NANPEASLFSFDIGQFPYTRGNAKLMKELFPDRFEFILGPSEKAVPEFGQA-----RPDVKCDVISVDGDHSTEGTFADLANFRKLASCRNW--VLMDDAGWNSTNSAWQRAKDE 182          
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Match: A0A7J6NZS6_PEROL (DNA mismatch repair protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NZS6_PEROL)

HSP 1 Score: 107 bits (268), Expect = 5.030e-20
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 2125 VEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHALDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQA-CNILFVDGDHSEDGAYADLVNFRVLAS-RDWNVLAIDDLESPPVEAAWRRFREEDGGGRLERVV 2556
            +  ICE GFNAGHS+  +L+ ++PS +++ FDLG+ EY  H L     +FP R E ++GDS   +P  +       + P   C+++FVDG H+ +GAY D+ NF  +A+ R+W  L  DD     V  AW+R ++E  GGR    V
Sbjct: 1220 INTICETGFNAGHSAAVFLI-ANPSARVITFDLGQFEYTMHNLRLAAQLFPNRFEYVLGDSYYALPDII------DKYPDLRCDLVFVDGSHTAEGAYNDIKNFHKIANCRNW--LLADDTGFKEVNTAWQRAKDEGQGGRATSYV 1356          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1360.2848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH46_9PHAE0.000e+083.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK45_ECTSI7.550e-28757.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK26_ECTSI6.410e-17788.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Q1_9PHAE4.010e-16338.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ26_ECTSI3.660e-13240.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SDJ9_9STRA4.490e-2533.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4E5N2_9STRA8.530e-2435.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7J6QD78_PEROL7.480e-2138.36Anaphase-promoting complex subunit 11 n=2 Tax=Perk... [more]
A0A7S2VQM3_9DINO1.320e-2039.13Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7J6NZS6_PEROL5.030e-2039.04DNA mismatch repair protein n=3 Tax=Perkinsus olse... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1360contigEcto-sp13_S_contig1360:1988..8082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score817.4
Seed ortholog evalue6.7e-234
Seed eggNOG ortholog2880.D7FK45
Model size2706
Hectar predicted targeting categorysignal peptide
Exons10
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
Cds size2706
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1360.2848.1prot_Ecto-sp13_S_contig1360.2848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1360 1988..8082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.2310443-CDS-Ecto-sp13_S_contig1360:1987..22391681462726.2310443-CDS-Ecto-sp13_S_contig1360:1987..2239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 1988..2239 +
1681462726.2448115-CDS-Ecto-sp13_S_contig1360:2943..32001681462726.2448115-CDS-Ecto-sp13_S_contig1360:2943..3200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 2944..3200 +
1681462726.2606673-CDS-Ecto-sp13_S_contig1360:3408..44121681462726.2606673-CDS-Ecto-sp13_S_contig1360:3408..4412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 3409..4412 +
1681462726.2689862-CDS-Ecto-sp13_S_contig1360:4630..49921681462726.2689862-CDS-Ecto-sp13_S_contig1360:4630..4992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 4631..4992 +
1681462726.2771904-CDS-Ecto-sp13_S_contig1360:5165..52701681462726.2771904-CDS-Ecto-sp13_S_contig1360:5165..5270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 5166..5270 +
1681462726.2853987-CDS-Ecto-sp13_S_contig1360:5799..59611681462726.2853987-CDS-Ecto-sp13_S_contig1360:5799..5961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 5800..5961 +
1681462726.2935615-CDS-Ecto-sp13_S_contig1360:6256..63791681462726.2935615-CDS-Ecto-sp13_S_contig1360:6256..6379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 6257..6379 +
1681462726.3016763-CDS-Ecto-sp13_S_contig1360:6625..68101681462726.3016763-CDS-Ecto-sp13_S_contig1360:6625..6810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 6626..6810 +
1681462726.3098507-CDS-Ecto-sp13_S_contig1360:7010..71491681462726.3098507-CDS-Ecto-sp13_S_contig1360:7010..7149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 7011..7149 +
1681462726.3178887-CDS-Ecto-sp13_S_contig1360:7965..80821681462726.3178887-CDS-Ecto-sp13_S_contig1360:7965..8082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1360 7966..8082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1360.2848.1

>prot_Ecto-sp13_S_contig1360.2848.1 ID=prot_Ecto-sp13_S_contig1360.2848.1|Name=mRNA_Ecto-sp13_S_contig1360.2848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=902bp
MGVISTHPAILLLILSFGQSRGSIDVRFIAPTAAFEGERFVSSFSEYQTT
EDRRSYLQAAREQGYTCSMLEQNYQDAFALFCAKTPTATYTDIPKSAEGL
RATLANVSLRAWLPSLLCPPRMTDELRFNNDEYDETIDRKACREAVEEAL
ATQPFVEATLVHDDQKTVMRATVDEVPWLTVLQNFVGPRVASNFHPLDCS
MASIALASERAKIQLLPALRALAGQNLFLSSTATIANAALDGVGDKNSVS
SRSIATMKQVSSSPGPDGEDESPTTNESVFATNRQPSSSVSSSAMPSAGR
IESLLALLGGRNERSGMVMTPPFLHMKHPIPRGRVSGGVVKFAVEVFLGA
ALRTSLLAAATSNDGSSSSVNTAGIESGYRRVGGDNGMKPQLSDYDQCVI
RAVVDGSISSTIPVDTADVFNNDGEAAVVMQTAIIPTYDQNPHCSEHPAK
ALAGWSAWAQDEDVWRVDARAVDRVCTREAFGAHHIHGELACRRSTSTVT
ERPTTPIVQGNVYEREWGSSAPSPRMESNIEGPAWEVLATSAMVEYFHTG
HLADVLSSSPWTAPSGGERRDSKGEYNGDGSKVSNPLFDSPPEEISVSLS
LESDPDETFVVVAVPRWLSDGEVWEAAFGTCSKASGPFRGILVNVNDCVD
LVTSAIAAKRVDLFNIMSQRLTAYLRSVSPSYNFEGHTGGFPQKVEALGA
LSRDGGDRVEKICEVGFNAGHSSLNWLLHSHPSTKILAFDLGEHEYMKHA
LDYLQAMFPGRLEVLIGDSSVTIPAYVVAEEAAGRKPQACNILFVDGDHS
EDGAYADLVNFRVLASRDWNVLAIDDLESPPVEAAWRRFREEDGGGRLER
VVMASGEHYAHAQENGNGAWDVHEDNDYHKYFMRRGHLSLGIGHYRMGGA
E*
back to top

mRNA from alignment at Ecto-sp13_S_contig1360:1988..8082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1360.2848.1 ID=mRNA_Ecto-sp13_S_contig1360.2848.1|Name=mRNA_Ecto-sp13_S_contig1360.2848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:1988..8082+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTCATTTCCACTCACCCGGCTATCTTGCTGCTGATTCTTTCTTT TGGTCAGAGCCGCGGTAGCATCGACGTGCGGTTCATCGCGCCGACCGCTG CTTTCGAAGGCGAACGGTTTGTTTCCTCTTTCAGCGAATACCAAACCACG GAGGATCGACGCTCGTACCTGCAAGCAGCCCGGGAGCAAGGATACACCTG CTCGATGCTCGAGCAAAACTATCAGGACGCTTTCGCCCTTTTCTGCGCCA AGGTGATGGCTAGATAGATGCGTTTCGGTGTCGTCATCGCTGACTAGGGA CAGCAGCTACCTAAAATACACAAGCGATCGAAGTTGTTGAGAGGTACATA CAGCAGCTGCCATCCTCTCTGTCACTTCTTTTATCCATAAATAGCATCGT TTAAACGGCCCTAATCCATCACTCGATCACTGCCCCCCCTGGCCATGCAT CGAGCTCATGTACTCGAGGTTGTAGGCGTATGTGCTGTAGATAAATTGGA CACCGCAGCCACTCCACTCCAAGAGCTGGTAGAGGGTTAGTCCCTACATG AAAATGTTTCCCCGCAAGCACTAAGTTGATTGAGCACATGCAGGCATTAC GATACTGACCATTCCTGGTGCATCCTGGTGTACCAAGAGACAACGAAGTT GCACGTGTAAAACAAATATCATCCACGATGACTTCGACGTGTTGCCTCCG TAGAAACGGTGAACGCGCTCGTTGCCATGATTCCGCGGTGACTTCGAATC CCGTCTCTATTTGCACGTTTTCGTTGGTGGAACCGATACAGACACAGAGG TGTATCGAGACGATGCGCCTGATTCCCCGCCCCGCCCCTCAAGAGAGGAA GTTGTAGCCCTCTCCGGGGTAGAGAGGAGACAAGAGGCGTTAGTTAGGGA CAAACCTAAGAAGGAGTGCAATTGATGTTTTGTGCGTTGCGAACGACTGC CCGCAGACTCCCACGGCGACCTACACCGACATCCCAAAGAGCGCCGAAGG CCTCCGAGCTACTCTGGCCAACGTCAGTCTTCGAGCTTGGTTACCAAGCT TGCTCTGCCCGCCGCGGATGACCGACGAACTCAGGTTTAACAACGATGAG TACGACGAAACGATCGACCGGAAGGCTTGTCGCGAGGCGGTCGAGGAAGC ATTGGCAACCCAGCCGTTCGTCGAGGCAACTCTGGTGCACGATGACCAAA AAACCGTCATGAGGTAACTGTACGAGAAGCTACGTCTCGGCTTCTTTTGA TCAGGTGGAAAAGCGTTGCCAGCATACCACCGGACAGCAGCACACAGTAG CAGCAGGCCGTAGCAGCACTTAATTCGTGCTCTGCAGCATTCTATTCTTG TATAGCGCTTGTATCCGCTTCCATTGGTCTGCAAGCCTAGCCTCTTCCCT CTTGCCTTCGGTATCACACAGAGCTACCGTGGACGAAGTGCCGTGGCTAA CGGTGCTGCAGAATTTCGTGGGGCCGAGGGTTGCGTCCAACTTCCACCCC TTGGACTGTTCCATGGCTTCTATCGCTCTCGCTTCCGAGCGTGCCAAGAT CCAGCTGTTGCCGGCCCTTCGAGCCCTTGCCGGCCAGAACCTGTTTCTCT CGTCAACAGCGACAATCGCAAACGCTGCTCTGGATGGTGTCGGAGACAAA AACTCCGTATCCTCACGGAGCATCGCCACCATGAAGCAAGTTTCATCATC ACCAGGTCCTGACGGAGAAGACGAATCGCCAACGACAAATGAAAGCGTTT TCGCCACAAACAGGCAACCTTCATCATCGGTGTCTTCGTCGGCGATGCCT TCTGCCGGGCGGATTGAGAGTCTCCTCGCCCTACTCGGCGGTAGAAACGA ACGCAGTGGCATGGTCATGACGCCACCTTTTCTGCATATGAAGCACCCTA TCCCACGAGGGCGCGTGAGCGGCGGAGTGGTGAAATTTGCGGTCGAGGTT TTCCTGGGAGCGGCGCTGAGGACAAGTCTGCTCGCGGCAGCCACTTCCAA CGACGGAAGCAGCAGCAGCGTCAATACTGCAGGCATCGAAAGCGGATACA GGAGGGTGGGGGGGGACAACGGGATGAAGCCACAGCTTTCTGATTATGAT CAATGCGTCATTCGTGCGGTTGTGGATGGCTCAATCTCTTCCACCATCCC CGTTGACACAGCGGATGTTTTCAACAATGACGGCGAAGCCGCTGTGGTCA TGCAGACGGCCATTATCCCAACTTACGACCAAAATCCCCACTGCAGTGAG CACCCAGCAAAGGCGTTGGCGGGGTGGAGTGCCTGGGCCCAAGACGAGGA CGTATGGCGGGTTGACGCCAGGGCTGTGGACAGAGTTTGCACACGAGAGG CGTTCGGTGCACACCACATCCACGGCGAGCTGGCGTGCCGCCGTAGTACC AGCACCGTTACGGAACGCCCAACCAGTTGAGAACAGGTTTTGGTGTGAGA TTCTATCGACCCTCTCTCTCTCACACGATTCTTTCGAGGAGCACCATTCC TGCGTACCTTCCTAACTCCCTGCTTGATCCACATATACCCCACCGAGGCT TGGGTTCAAAGTTGCAAGTAGCCTCGTCGCTGCTGCTCTCTCTTCCTGAG TTGTAGTTGATATTCCCACCAACGCCGACCACTTCTTCGCCAGCACCGAT CGTCCAGGGCAATGTGTACGAGAGGGAATGGGGATCGTCGGCGCCATCCC CACGTATGGAATCGAATATCGAGGGGCCGGCATGGGAAGTGTTGGCGACT TCTGCAATGGTCGAATATTTCCACACGGGCCACCTGGCGGATGTTCTGTC ATCGTCTCCTTGGACAGCACCGTCGGGAGGAGAACGTCGTGACAGTAAGG GCGAATACAACGGCGACGGTTCGAAAGTCTCGAATCCACTTTTCGATTCG CCCCCGGAAGAGATTTCTGTATCGCTTTCTCTCGAAAGTGACCCCGATGA GACCTTCGTGGTTGTGGCCGTACCCAGGTGGCTCTCGGATGGAGAGGTAT GGGAGGTACGTCAGGACGTGCTAGGAGGCTTTTCTCGTGTCGCGGCAGAG TTGTACGTAGTGTTTGCGAATTGCCTCTTTATGAAAATGTGGTTTTTGTC CTGCGTTTCTCCCTCCTGTACTAACTCTTGGTGTTAAATGGTTCCGTGGA ATGTTTCGCGTTCCCACTTTTGGTGCAGGCGGCGTTCGGCACTTGTTCAA AGGCTTCCGGACCGTTCCGAGGAATCCTGGTCAACGTTAACGACTGCGTC GACTTGGTCACCAGCGCGATCGCGGCGAAGAGGGTAAGTGAGAACACACA CTCTTCGAAAGCGTAGGTAGATGGCTACGACCCCCGGAGTCGGTCGCTTG CTCAGGCCACACACACGATAGTACCAACATTTGTGTACGAGTATCGCTGA GTTTACGAGCCGCTGATAAATCGACAACCAAACACAGCGAGAGGCGGTCA ACGTCGTCCGCCATGTGGCAGGGTTGAGTGGCACCGTGGAAGGTAAGGTG TCGTAGGTTCAAGGAGTGGGCCGGGAGTCCCACAGAGCGAGAGCTATCTC CAACTTGTCCTATTCACACGTATCCCGTCGTCATCGAGGGGGGTTAAGGA GGGATGCACAGGTGTTGAGGATATCGGTTGTTCAGTCAATAAATATGTGG TACCAAGCATTCACTTGAGGCTGTGAAGGAGCAACATGACCGTGTGCTTT CTGCTATGTTCAAGACCGTGGCATCCTTCGTACCACCCATGCGACTGTTC ACGTTGCTCTGTCAAGTCTATCTGTGTTTGGTACTGATTGCTGAACTACG TTTCTTGCGCAGGTGGACCTATTCAACATTATGTCCCAACGACTAACAGC CTACTTGAGGAGCGTAAGCCCCAGCTACAACTTCGAGGGACACACGGGTG GGTTTCCGCAGAAAGTTGAAGCCCTTGGAGCGTTGTCGCGGGACGGCGGA GATCGCGTGGAAAAGATTTGCGAGGTGAATGAGGAACCCTTCTTTTGACG AGGTTCGATCTGGGTGGTGTCTCGGCTTGCCGTGGCGACCCTGAGGGAAT CCAAGGGGAAGTTGGCCAACTCTCGAGGATGCAGAAACGTTGGATGGATG TTTTTTTTGTTCTTTTGCGGAATCACCAAGCACCTAATACTCACTTGACA TACGCACGAGGTGTGCGAAGCTCGATACTCCATTTAATCCAACCCCCCCT TTGTGCTTTCCCCTCCCCCTTTTGGCTCCTCCACTCTTGCCCATCCTTGA TCTGATTTTCGGTATCAAGGTGGGCTTTAACGCTGGGCACAGCTCCCTCA ACTGGCTGCTTCACTCGCACCCTTCGACCAAGATCTTGGCCTTCGATTTG GGGGAACACGAATACATGAAGCACGCCCTCGACTACCTGCAGGTACAATA TGCTCGTGTAAGAATAATATTGTCACCGGAAACCGTGGTATCCCCCTTCT GCAGCTCTAGAGCGGCCTGCCTGGCCCATCTTCCCAACACCCAACCCCGA TACCGAGTATCCAACAACCCACCGTTTCTCTGTGGTAACCAGCGATAGTA GCTGACGTCAACTCTGAGAGGAAGGTGCTTGAGTTTCGATCTTCACTCCG GCAATAACCCCTCCAACATAATCTCTCGAAATAAACAGGCTATGTTTCCC GGTCGGTTGGAGGTACTCATCGGAGATTCTTCTGTAACCATCCCGGCATA CGTGGTGGCAGAAGAGGCCGCTGGCAGAAAGCCTCAAGCATGCAATATCC TTTTCGTCGATGGCGATCACAGCGAAGACGGTGCCTATGCCGACCTTGTC AACTTCCGGGTGTTGGCTAGCAGGTGAAGTCTCCATCATAGGACCTTCAG ATGCAATTTTTGAATATCATTCCGGGCGAGATTTCTCGTATCACTTGGAG AGAGGCATCAGATGAGGCTGAAAAAGTCGCCTTCGTTGCTGAGGGTTTCC AGAGGTCGAAGATGTGTAGTAGGCTGGCAAGTGTAACAACCAACTCGGTG AACTCAATTGTGACTGTCGTAAGGGATTGGAACGTGCTTGCAATCGACGA CTTGGAATCCCCACCCGTGGAGGCAGCGTGGCGCCGTTTCCGTGAAGAGG ATGGAGGGGGAAGGCTTGAACGCGTGGTGATGGCCTCTGGGGAACACTAT GCGCATGCACAGGTGGGTGGCATTGGTACAGTTTTTTGTGGTGCTTACGC GTTGCGTCAGGGGATAGTGGAGCTCGATTGCGCTATGACAGCGAGAGGAA GAGTCGCTCGCTTGTACCCGGCTAGAGGGCGTTGTCGTGAAAGATTTCAT GTAGTGTGTTTTTCGTTTGTTGTGGATGGGTGTCCTGTTTACGTCGGGGT CGGTGACTTCTGTGGGGACAGTTGTCAACGTACACGGACAACTCAGACTA GGGCAGACTTTCTATGTAAAGCGTAACGATCGCCGCCAGTTCGTGTTCGT TCTCATGACTGTTCCTGGCGTGATGCGCTACGTTGACATCTTTTATTAAG ACTACGTTCTCTCGTTTCTTCGCATGATAGATATGGGTTCCAGTCGGTTT GGCTGCTCTCGATAGTTCGGTCTGCATTTGCTCTGTTGACGGTCTCACTT CGATCAACGGGGAGTTACGGTGATCGGCAAGGAGATCCAACAGATGACCT ATGCCGTTCTAAGGTTGCTCTTGCACCTCCATGTTTCCACACTCGTTGAT ACCTGTCTTACATATGGTTATGATTTCCCTTGGAATGCCGCGATGACTCC AGTTGCGGTATGCTGCAGTGCCCAGATAGTGCATTCTTCGGAGTACAAAG GCGATACATCTGATTGGTAGGAGAACATTCGCCATAACCCCTGGGGAAGA AAACACTCATTGGGTTGCCTCAACAACTGTGTATTGTTTGCGACTGTTGA AGTATGGCAGCAGCACAGGTCTTATTCGCGAGCACGCGAAACTCTCAACT TTCTGTTCTCGGTTTACAACGTGGACAGGAGAATGGCAATGGAGCGTGGG ACGTGCACGAGGACAACGACTATCACAAGTATTTCATGCGACGCGGACAT CTATCTCTGGGCATTGGCCACTACAGGATGGGTGGTGCAGAGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1360:1988..8082+

>mRNA_Ecto-sp13_S_contig1360.2848.1 ID=mRNA_Ecto-sp13_S_contig1360.2848.1|Name=mRNA_Ecto-sp13_S_contig1360.2848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1360:1988..8082+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTCATTTCCACTCACCCGGCTATCTTGCTGCTGATTCTTTCTTT
TGGTCAGAGCCGCGGTAGCATCGACGTGCGGTTCATCGCGCCGACCGCTG
CTTTCGAAGGCGAACGGTTTGTTTCCTCTTTCAGCGAATACCAAACCACG
GAGGATCGACGCTCGTACCTGCAAGCAGCCCGGGAGCAAGGATACACCTG
CTCGATGCTCGAGCAAAACTATCAGGACGCTTTCGCCCTTTTCTGCGCCA
AGACTCCCACGGCGACCTACACCGACATCCCAAAGAGCGCCGAAGGCCTC
CGAGCTACTCTGGCCAACGTCAGTCTTCGAGCTTGGTTACCAAGCTTGCT
CTGCCCGCCGCGGATGACCGACGAACTCAGGTTTAACAACGATGAGTACG
ACGAAACGATCGACCGGAAGGCTTGTCGCGAGGCGGTCGAGGAAGCATTG
GCAACCCAGCCGTTCGTCGAGGCAACTCTGGTGCACGATGACCAAAAAAC
CGTCATGAGAGCTACCGTGGACGAAGTGCCGTGGCTAACGGTGCTGCAGA
ATTTCGTGGGGCCGAGGGTTGCGTCCAACTTCCACCCCTTGGACTGTTCC
ATGGCTTCTATCGCTCTCGCTTCCGAGCGTGCCAAGATCCAGCTGTTGCC
GGCCCTTCGAGCCCTTGCCGGCCAGAACCTGTTTCTCTCGTCAACAGCGA
CAATCGCAAACGCTGCTCTGGATGGTGTCGGAGACAAAAACTCCGTATCC
TCACGGAGCATCGCCACCATGAAGCAAGTTTCATCATCACCAGGTCCTGA
CGGAGAAGACGAATCGCCAACGACAAATGAAAGCGTTTTCGCCACAAACA
GGCAACCTTCATCATCGGTGTCTTCGTCGGCGATGCCTTCTGCCGGGCGG
ATTGAGAGTCTCCTCGCCCTACTCGGCGGTAGAAACGAACGCAGTGGCAT
GGTCATGACGCCACCTTTTCTGCATATGAAGCACCCTATCCCACGAGGGC
GCGTGAGCGGCGGAGTGGTGAAATTTGCGGTCGAGGTTTTCCTGGGAGCG
GCGCTGAGGACAAGTCTGCTCGCGGCAGCCACTTCCAACGACGGAAGCAG
CAGCAGCGTCAATACTGCAGGCATCGAAAGCGGATACAGGAGGGTGGGGG
GGGACAACGGGATGAAGCCACAGCTTTCTGATTATGATCAATGCGTCATT
CGTGCGGTTGTGGATGGCTCAATCTCTTCCACCATCCCCGTTGACACAGC
GGATGTTTTCAACAATGACGGCGAAGCCGCTGTGGTCATGCAGACGGCCA
TTATCCCAACTTACGACCAAAATCCCCACTGCAGTGAGCACCCAGCAAAG
GCGTTGGCGGGGTGGAGTGCCTGGGCCCAAGACGAGGACGTATGGCGGGT
TGACGCCAGGGCTGTGGACAGAGTTTGCACACGAGAGGCGTTCGGTGCAC
ACCACATCCACGGCGAGCTGGCGTGCCGCCGTAGTACCAGCACCGTTACG
GAACGCCCAACCACACCGATCGTCCAGGGCAATGTGTACGAGAGGGAATG
GGGATCGTCGGCGCCATCCCCACGTATGGAATCGAATATCGAGGGGCCGG
CATGGGAAGTGTTGGCGACTTCTGCAATGGTCGAATATTTCCACACGGGC
CACCTGGCGGATGTTCTGTCATCGTCTCCTTGGACAGCACCGTCGGGAGG
AGAACGTCGTGACAGTAAGGGCGAATACAACGGCGACGGTTCGAAAGTCT
CGAATCCACTTTTCGATTCGCCCCCGGAAGAGATTTCTGTATCGCTTTCT
CTCGAAAGTGACCCCGATGAGACCTTCGTGGTTGTGGCCGTACCCAGGTG
GCTCTCGGATGGAGAGGTATGGGAGGCGGCGTTCGGCACTTGTTCAAAGG
CTTCCGGACCGTTCCGAGGAATCCTGGTCAACGTTAACGACTGCGTCGAC
TTGGTCACCAGCGCGATCGCGGCGAAGAGGGTGGACCTATTCAACATTAT
GTCCCAACGACTAACAGCCTACTTGAGGAGCGTAAGCCCCAGCTACAACT
TCGAGGGACACACGGGTGGGTTTCCGCAGAAAGTTGAAGCCCTTGGAGCG
TTGTCGCGGGACGGCGGAGATCGCGTGGAAAAGATTTGCGAGGTGGGCTT
TAACGCTGGGCACAGCTCCCTCAACTGGCTGCTTCACTCGCACCCTTCGA
CCAAGATCTTGGCCTTCGATTTGGGGGAACACGAATACATGAAGCACGCC
CTCGACTACCTGCAGGCTATGTTTCCCGGTCGGTTGGAGGTACTCATCGG
AGATTCTTCTGTAACCATCCCGGCATACGTGGTGGCAGAAGAGGCCGCTG
GCAGAAAGCCTCAAGCATGCAATATCCTTTTCGTCGATGGCGATCACAGC
GAAGACGGTGCCTATGCCGACCTTGTCAACTTCCGGGTGTTGGCTAGCAG
GGATTGGAACGTGCTTGCAATCGACGACTTGGAATCCCCACCCGTGGAGG
CAGCGTGGCGCCGTTTCCGTGAAGAGGATGGAGGGGGAAGGCTTGAACGC
GTGGTGATGGCCTCTGGGGAACACTATGCGCATGCACAGGAGAATGGCAA
TGGAGCGTGGGACGTGCACGAGGACAACGACTATCACAAGTATTTCATGC
GACGCGGACATCTATCTCTGGGCATTGGCCACTACAGGATGGGTGGTGCA
GAGTAG
back to top