mRNA_Ecto-sp13_S_contig13597.2845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13597.2845.1
Unique NamemRNA_Ecto-sp13_S_contig13597.2845.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A6H5KZD4_9PHAE (DUF4201 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD4_9PHAE)

HSP 1 Score: 430 bits (1106), Expect = 6.220e-140
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 1 
Query:    1 NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCRE+LQEQQ +YDTVAIALQTRLDEKEYKS EIADSFR+FKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERD LTRAKKDRD
Sbjct:  868 NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCREKLQEQQAEYDTVAIALQTRLDEKEYKSREIADSFRDFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDRLTRAKKDRD 1111
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: W4HB69_9STRA (DUF4201 domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4HB69_9STRA)

HSP 1 Score: 239 bits (610), Expect = 7.030e-75
Identity = 138/207 (66.67%), Postives = 164/207 (79.23%), Query Frame = 1 
Query:  112 LHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            L E+EK Y + L S+   R +L   Q QYD +A+ LQ+RLDEKE K++EI +SF EFKRE+AR+AE++RTGK IPK VI+QFE AE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK TTTVQ+LTH KEKLQFV  EN      L+ L++DL + RD LT+ KK+RD
Sbjct:   64 LVENEKRYYDCLKSVHEARAQLLTAQTQYDKIAMELQSRLDEKESKANEIQESFMEFKREVARSAENTRTGKPIPKRVIAQFEVAEMKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTTTVQVLTHIKEKLQFVLVENQNLKKDLAELDEDLTKNRDTLTKKKKERD 270
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A6G0WC92_9STRA (DUF4201 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC92_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.370e-74
Identity = 139/217 (64.06%), Postives = 168/217 (77.42%), Query Frame = 1 
Query:   88 GVEKEATPLH--ESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            G+EK+   L   E+EK Y + L S+   R +L   Q QYD +A+ LQ RLDEKE K++EI +SF EFKRE+AR+AE++RTGK IPK +I+QFEAAE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK TTTVQ+LTH KEKLQF+  EN      L+ L+ +L + RD LT+ KK+RD
Sbjct:   56 GLEKKEDRLSMVENEKRYFDCLKSVHEARTQLVTAQTQYDKIAMELQARLDEKETKANEIQESFMEFKREVARSAENTRTGKPIPKRIITQFEAAELKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTTTVQVLTHIKEKLQFILVENQCLKKDLAELDQELTKNRDALTKKKKERD 272
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A1V9ZBI1_9STRA (DUF4201 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBI1_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.450e-74
Identity = 142/244 (58.20%), Postives = 177/244 (72.54%), Query Frame = 1 
Query:    1 NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            N   Q+KIA L+  +Q++  + + +            + E+EK Y + L S+   R +L   Q QYD +A+ LQ RLDEKE K++EI +SF EFKRE+AR+AE++RTGK IPK +++QFEAAE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK TTTVQ+LTH KEKLQFV  EN      L+ L++ L   RD LT+ KK+RD
Sbjct:   36 NATLQRKIAPLLQKKQESSSDKKEDR---------LSVVENEKRYYDCLNSVHEARVQLATAQTQYDRIAMELQARLDEKECKANEIHESFMEFKREVARSAENTRTGKPIPKRIVAQFEAAEIKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTTTVQVLTHIKEKLQFVLVENQALKRDLAELDEALTASRDVLTKHKKERD 270
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A5D6Y597_9STRA (DUF4201 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y597_9STRA)

HSP 1 Score: 234 bits (597), Expect = 6.630e-73
Identity = 145/240 (60.42%), Postives = 174/240 (72.50%), Query Frame = 1 
Query:   13 QKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            Q+KIA+L+   QKT+E +    G     ++ +   E+EK Y E L S+   + ++   Q QYD +A+ LQ RLDEKE K  EI DSF EFKREIA+ AE+ RTGK IPK VI QFEAA+ KKD+E+EKVRLKNINLR  L+K+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK T+TVQ+LTH KEKLQFV AEN     + + LE+ L   RD L R KK+RD
Sbjct:   47 QRKIAALL---QKTQENS----GAEQRREDKSTATENEKRYLECLRSVHEVKVQMAAAQTQYDRIALDLQARLDEKEAKVTEIQDSFLEFKREIAKNAENMRTGKPIPKRVIGQFEAADLKKDQEVEKVRLKNINLRTHLKKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTSTVQVLTHIKEKLQFVLAENQTLKKESAELEEALTVNRDRLARKKKERD 279
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A7S2AZF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZF2_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.440e-72
Identity = 141/245 (57.55%), Postives = 185/245 (75.51%), Query Frame = 1 
Query:    1 NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEA-TPLHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            N E Q+KI +++ SQ++  +    +     V+K+A  P HESEK Y+++L SI+    + +    ++D VA+ LQ RLD+KE K+ +IA+SF EFK EIA  AEHSRTGK I K  +  F+  E  KD+E  KVRL+NINLRM+LRK+E SLRAKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKKNT+ VQ+LTH KEKLQFV+AENS+T   L+ L+ +L++ERD LT+AK++++
Sbjct:  137 NSELQRKIVTILASQKRVNDTNTPK-----VDKDADVPNHESEKQYSDTLNSILDAHSKFKYMCAEFDRVAMDLQKRLDDKEAKASDIAESFSEFKAEIALQAEHSRTGKPIAKRTVQMFQEQEGLKDQEAVKVRLRNINLRMILRKLELSLRAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKNTSNVQVLTHIKEKLQFVSAENSITRDSLASLDSELSKERDLLTKAKREKE 376
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A067CB44_SAPPC (DUF4201 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CB44_SAPPC)

HSP 1 Score: 229 bits (585), Expect = 7.330e-72
Identity = 132/202 (65.35%), Postives = 154/202 (76.24%), Query Frame = 1 
Query:  118 ESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKK 723
            E+EK Y + L S+   R +L   Q QYD +A+ LQ RLDEKE K++EI +SF EFKRE+AR+AE++RTGK IPK +I+QFE AE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK TTTVQ+LTH KEKLQFV  EN    H        L Q RD LT+ K+
Sbjct:   64 ENEKRYYDCLNSVHEARVQLATAQTQYDRIAMELQARLDEKECKANEIHESFMEFKREVARSAENTRTGKPIPKRIIAQFEVAEVKKDQEVEKVRLKNINLRTHLRKLEAQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTTTVQVLTHIKEKLQFVLVENQALKHDXXXXXXXLTQSRDVLTKHKR 265
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BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A3R7B1S4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1S4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.780e-71
Identity = 138/207 (66.67%), Postives = 164/207 (79.23%), Query Frame = 1 
Query:  112 LHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            L E+EK Y + L S+   R +L   Q QYD +A+ LQ+RLDEKE K++EI +SF EFKRE+AR+AE++RTGK IPK VI+QFE AE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK TTTVQ+LTH KEKLQFV  EN      L+ L++DL + RD LT+ KK+RD
Sbjct:  401 LVENEKRYYDCLKSVHEARAQLLTAQTQYDKIAMELQSRLDEKESKANEIQESFMEFKREVARSAENTRTGKPIPKRVIAQFEVAEMKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTTTVQVLTHIKEKLQFVLVENQNLKKDLAELDEDLTKNRDTLTKKKKERD 607
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: A0A2D4C854_PYTIN (DUF4201 domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C854_PYTIN)

HSP 1 Score: 230 bits (587), Expect = 3.720e-71
Identity = 136/205 (66.34%), Postives = 156/205 (76.10%), Query Frame = 1 
Query:  118 ESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            E+EK Y ESL S+   + +    Q QYD +A+ LQ +LDEKE K  EI DSF EFKREIA+ AE+ RTGK IP  VI+QFE+AE KKD+E+EKVRLKNINLR  LRK+E  L AKEQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK T+TVQ+LTH KEKLQFV AEN       + LE+ L+  RD L R KKDRD
Sbjct:   85 ENEKRYLESLRSVHEAKVQTAAAQAQYDRIALDLQAKLDEKEAKVTEIQDSFLEFKREIAKNAENMRTGKPIPNRVIAQFESAELKKDQEVEKVRLKNINLRTHLRKLEQQLHAKEQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTSTVQVLTHIKEKLQFVLAENQTLKKDSAELEEALSVNRDQLARKKKDRD 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Match: K3WVZ3_GLOUD (DUF4201 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVZ3_GLOUD)

HSP 1 Score: 228 bits (581), Expect = 1.870e-70
Identity = 143/240 (59.58%), Postives = 172/240 (71.67%), Query Frame = 1 
Query:   13 QKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLASIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIARTAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGSLRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQILTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD 732
            Q+KIA ++   QKT+E +     G    ++ +   E+EK Y E L S+   + +    Q QYD +A+ LQ RLDEKE K  EI DSF EFKREIA+ AE  RTGK IPK VISQFEAA+ KKD+E+EKVRLKNINLR  L+K+E  L A+EQLAEGLHLIDFEQLKIENQT+NEKIEERNEEL KLRKK T+TVQ+LTH KEKLQFV AEN     + + LE+ L   RD L + KK+RD
Sbjct:   47 QRKIAMML---QKTQENS----CGEQRREDKSTATENEKRYLECLRSVHEVKVQTLTAQAQYDHIALDLQARLDEKESKVSEIQDSFLEFKREIAKNAESMRTGKPIPKRVISQFEAADLKKDQEVEKVRLKNINLRTHLKKLEQQLHAREQLAEGLHLIDFEQLKIENQTLNEKIEERNEELHKLRKKTTSTVQVLTHIKEKLQFVLAENQTLKKESAELEEALTVNRDKLAKKKKERD 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13597.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD4_9PHAE6.220e-14097.54DUF4201 domain-containing protein n=2 Tax=Ectocarp... [more]
W4HB69_9STRA7.030e-7566.67DUF4201 domain-containing protein n=3 Tax=Aphanomy... [more]
A0A6G0WC92_9STRA1.370e-7464.06DUF4201 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A1V9ZBI1_9STRA4.450e-7458.20DUF4201 domain-containing protein n=1 Tax=Achlya h... [more]
A0A5D6Y597_9STRA6.630e-7360.42DUF4201 domain-containing protein n=1 Tax=Pythium ... [more]
A0A7S2AZF2_9STRA1.440e-7257.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CB44_SAPPC7.330e-7265.35DUF4201 domain-containing protein n=1 Tax=Saproleg... [more]
A0A3R7B1S4_9STRA2.780e-7166.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2D4C854_PYTIN3.720e-7166.34DUF4201 domain-containing protein n=2 Tax=Pythium ... [more]
K3WVZ3_GLOUD1.870e-7059.58DUF4201 domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13597contigEcto-sp13_S_contig13597:408..3064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score433.7
Seed ortholog evalue5.6e-119
Seed eggNOG ortholog2880.D7FPR3
Preferred nameCCDC96
Model size732
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Domain of unknown function (DUF4201)
EggNOG OGs28MPJ@1,2QS75@2759
Cds size732
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13597.2845.1prot_Ecto-sp13_S_contig13597.2845.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13597 408..3064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.6486738-CDS-Ecto-sp13_S_contig13597:407..4761681462725.6486738-CDS-Ecto-sp13_S_contig13597:407..476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 408..476 -
1681462725.6726754-CDS-Ecto-sp13_S_contig13597:1166..12321681462725.6726754-CDS-Ecto-sp13_S_contig13597:1166..1232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 1167..1232 -
1681462725.688211-CDS-Ecto-sp13_S_contig13597:1405..15231681462725.688211-CDS-Ecto-sp13_S_contig13597:1405..1523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 1406..1523 -
1681462725.7016869-CDS-Ecto-sp13_S_contig13597:1700..17831681462725.7016869-CDS-Ecto-sp13_S_contig13597:1700..1783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 1701..1783 -
1681462725.713038-CDS-Ecto-sp13_S_contig13597:1948..20531681462725.713038-CDS-Ecto-sp13_S_contig13597:1948..2053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 1949..2053 -
1681462725.7236035-CDS-Ecto-sp13_S_contig13597:2432..25281681462725.7236035-CDS-Ecto-sp13_S_contig13597:2432..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 2433..2528 -
1681462725.7375116-CDS-Ecto-sp13_S_contig13597:2869..30641681462725.7375116-CDS-Ecto-sp13_S_contig13597:2869..3064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13597 2870..3064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13597.2845.1

>prot_Ecto-sp13_S_contig13597.2845.1 ID=prot_Ecto-sp13_S_contig13597.2845.1|Name=mRNA_Ecto-sp13_S_contig13597.2845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
NGEWQKKIASLMLSQQKTREEARTEHGGRGVEKEATPLHESEKNYAESLA
SIVSCRERLQEQQVQYDTVAIALQTRLDEKEYKSHEIADSFREFKREIAR
TAEHSRTGKAIPKGVISQFEAAEAKKDREIEKVRLKNINLRMMLRKVEGS
LRAKEQLAEGLHLIDFEQLKIENQTVNEKIEERNEELLKLRKKNTTTVQI
LTHTKEKLQFVAAENSVTSHQLSILEDDLNQERDHLTRAKKDRD
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mRNA from alignment at Ecto-sp13_S_contig13597:408..3064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13597.2845.1 ID=mRNA_Ecto-sp13_S_contig13597.2845.1|Name=mRNA_Ecto-sp13_S_contig13597.2845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13597:408..3064- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGGCGAATGGCAGAAGAAGATCGCGTCTCTCATGTTGAGCCAACAGAA
AACCAGAGAGGAGGCCAGGACCGAGCACGGTGGGAGGGGAGTCGAGAAGG
AAGCAACCCCATTGCACGAGAGCGAGAAAAACTACGCCGAATCCCTTGCC
TCTATCGTGTCTTGTCGGGAGAGGCTTCAAGAGCAGCAGGTGCAAGTGGT
AGGGCGGTACAGGTCGCCCCAGTTCAACTTGGGTTCGCACCACTTGTGTA
GTTTTTGTCCAGTAGAAGGGCGGCCTTTCGCGGCGTTTGCTTGCTAGACC
AGGTATTTTTGCATTGGTCAGCAAGTGGTTGACGTGACGAAGCGTTCTGT
ACTACAGGGAAGCGGTTCTGCCCAGAGATGTCGGACACACGACTACGGTG
AACAGAAATGATCAGGAAAATTACTGGTGCGGGTTGAGGCAACGTCTCTG
TATCTCAGGGCTTATCTGCTCGGTCCAAAACATTCCCGCTGCCATGGTTG
TCATACCCTTCGCGTCAATTCTAACGACAGGCTGAGTACGATACCGTGGC
AATTGCTCTTCAGACAAGGTTGGACGAGAAAGAGTACAAATCACACGAAA
TAGCTGACTCTTTCCGGGAATTTAAGAGAGAGGTGAGTTTTTGCAAGTCG
TCCGGTGAAGAAGGGTCACGTTTCGTCCTTTCATAGCGAAAAAACTATCC
GCAGGCGCTGTGGTGCACAAGACACAAATAGAGCCATGCAGCCATGGCAC
CCCGCGTGTAGATCGGTTTCCGGCATGTACATTCGCGGAGAGACCAAAAG
GCCCCCATCGAGCTGGTGTTCTTGCGTCGTTGTGTCTCCCTGTTTCGATA
CGATTGTGCGACTACGGTTGGTTGTGTGTGGTGACCGTAGGGCCGTTCGG
GGCTCTGTGCTTATGATCTTTTCTGCAGTATGTTGCAACCACCACAATCG
GCAATCAACTGGCCATGATCTGTAATCCGTCTGTTCGTGCGCTTCCGCTT
TTGCTCTGAAGATTGCTCGGACAGCGGAACACAGTCGCACGGGCAAGGCG
ATACCGAAGGGGGTCATCTCTCAGTTTGAGGCGGCGGAAGCCAAGAAAGA
TCGGGAGATCGAAAAGGTACGAACTGCGAAGTCCTGAAGATATGTATAGG
CCACAGTTATTGTTATTGTTCGAGACAACATGGCTCTCACGAACCATCTC
ATCTCAAAAAACCTCCAGAAATTCTCGTTTGGAACCAGATTGCGTGATGA
CACGTGTTTCACTGTCCTCGTCTTCTGTCAGGTGCGTTTGAAGAACATCA
ACTTGCGTATGATGCTTAGAAAGGTGGAGGGAAGTCTTCGAGCGAAGGAG
CAACTCGCAGAAGGGTGAGCGCCGCGGACAAACGCACGTACATTTTAACT
CCTGATCGGTCGTTTTCCCGACGCGAGAAGACGGCTGTTACGTCGAGAAT
GATTTTGATTTCAAACAAGTGCAGTAAGGCGCTGTGTTCAGATGCAGGTT
TTATCTTCCGACTCAAACTTTGGAATTCCAACCATCTGCAGGCTCCATCT
CATCGACTTCGAGCAACTGAAGATTGAAAACCAAACGGTCAACGAGAAAA
TCGAGGAGAGAAACGAGGAGCTCCTTAAGCTCCGGAAGAAGAACACCACC
ACGGTTCAGGTAGCCCACGCCTAGAATCTAGGCAAACGGGTAGGTCGTGG
TTTATTTGGTGGAAGATCGCACGATCGGTCGTTTAGCAATAAAAACTAGT
TCTAAGAATTTTTGGTGAAGAAGATAATTCCTTCATGCCTTCCCCGAACC
ACGACCGTTTTTTCACTTACCGGCTTCAACAGATCCTTACCCACACTAAG
GAGAAGCTGCAATTCGTCGCAGCGGAGAATTCCGTCACAAGTCACCAGGT
AAGATTTGTATAGAAGGGAAATAAACGTCACCAGGGCATGGTACTGGTGG
CGTCATCAGTGTACGTAAAACTTGGCTGCACAGGACAATTCGGGAAGACA
TTGCTTACACCGCTCGTCTCGAGCGAACGCTAGAGCAATTCAACCAACAT
ACGTGAAGGAGGTGGGCTGAAGGAGGTGGACGTTTTTGGGAACGGAAATT
TTCTCTTCTTTCCGGTGTTCGCAGTCTCTTACCTTGAACGATGAAAGAGC
TCGTCTACTGGAAACAGGGCGTCTGTTGCTGGCTCGCTACATTCACATGC
ACTTGGATGTAGCGAACGTATTGAAGCTACTACATCATCCAAGGAGGTGA
CCTTGCAATCATCACCTCCGGCATGTCGGATTGCGAGTTTGATGGAGTCT
CCTTTCCCGCTCTAGAATGTTGGCCGTACACGTGCGCATCGGGCAGCTCG
GTAGCGCTGCTGTTTGGCATAGGATAAGAGTAGCCGTTGATGAGGTTGAC
AGGGCTGTGGGGATGATTGATGTTGAGAGGGACGGTGTTTGATGGAATCT
TGAGGGGGTGCTTCGCTACTGCTCACACAGACTAGAGAGGTTCAGGCCAT
CAAGTACCAGTACCTCCCGCTGTGCGTAGCTCCGTAGCGTGCTTCAAATT
CGGCATTACCCTTTATACAATTCGTCTGTGTTTGACAGCTTTCGATTCTG
GAAGACGATCTCAACCAGGAGAGGGATCATCTCACCCGAGCCAAGAAAGA
TCGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13597:408..3064-

>mRNA_Ecto-sp13_S_contig13597.2845.1 ID=mRNA_Ecto-sp13_S_contig13597.2845.1|Name=mRNA_Ecto-sp13_S_contig13597.2845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13597:408..3064- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGGCGAATGGCAGAAGAAGATCGCGTCTCTCATGTTGAGCCAACAGAA
AACCAGAGAGGAGGCCAGGACCGAGCACGGTGGGAGGGGAGTCGAGAAGG
AAGCAACCCCATTGCACGAGAGCGAGAAAAACTACGCCGAATCCCTTGCC
TCTATCGTGTCTTGTCGGGAGAGGCTTCAAGAGCAGCAGGTGCAATACGA
TACCGTGGCAATTGCTCTTCAGACAAGGTTGGACGAGAAAGAGTACAAAT
CACACGAAATAGCTGACTCTTTCCGGGAATTTAAGAGAGAGATTGCTCGG
ACAGCGGAACACAGTCGCACGGGCAAGGCGATACCGAAGGGGGTCATCTC
TCAGTTTGAGGCGGCGGAAGCCAAGAAAGATCGGGAGATCGAAAAGGTGC
GTTTGAAGAACATCAACTTGCGTATGATGCTTAGAAAGGTGGAGGGAAGT
CTTCGAGCGAAGGAGCAACTCGCAGAAGGGCTCCATCTCATCGACTTCGA
GCAACTGAAGATTGAAAACCAAACGGTCAACGAGAAAATCGAGGAGAGAA
ACGAGGAGCTCCTTAAGCTCCGGAAGAAGAACACCACCACGGTTCAGATC
CTTACCCACACTAAGGAGAAGCTGCAATTCGTCGCAGCGGAGAATTCCGT
CACAAGTCACCAGCTTTCGATTCTGGAAGACGATCTCAACCAGGAGAGGG
ATCATCTCACCCGAGCCAAGAAAGATCGGGAC
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