mRNA_Ecto-sp13_S_contig13593.2844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13593.2844.1
Unique NamemRNA_Ecto-sp13_S_contig13593.2844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13593.2844.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.580e-32
Identity = 110/126 (87.30%), Postives = 110/126 (87.30%), Query Frame = -2 
Query:  321 DHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEELLLQQQQ----GHWRAESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNALSGSKRGVVNHGVAASPSSGWSFREE 686
            DHPTAGANLAVVFAMC GLLASNWGRLVRRDLRERALAEE           GHWRAESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NALSGSKRGVVNHGVAA PSSGWSFREE
Sbjct: 1409 DHPTAGANLAVVFAMCSGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXXGHWRAESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRENALSGSKRGVVNHGVAAPPSSGWSFREE 1534
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BLAST of mRNA_Ecto-sp13_S_contig13593.2844.1 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.800e-32
Identity = 111/126 (88.10%), Postives = 111/126 (88.10%), Query Frame = -2 
Query:  321 DHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEELLLQQQ----QGHWRAESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNALSGSKRGVVNHGVAASPSSGWSFREE 686
            DHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEE          QGHWRAESA SA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NALS SKRGVVNHGV ASPSSGWSFREE
Sbjct:  832 DHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXQGHWRAESAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALSRSKRGVVNHGVVASPSSGWSFREE 957
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13593.2844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJD0_9PHAE1.580e-3287.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS70_ECTSI2.800e-3288.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13593contigEcto-sp13_S_contig13593:2448..3263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.608407-CDS-Ecto-sp13_S_contig13593:2447..27341681462725.608407-CDS-Ecto-sp13_S_contig13593:2447..2734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13593 2448..2734 +
1681462725.617932-CDS-Ecto-sp13_S_contig13593:2861..32611681462725.617932-CDS-Ecto-sp13_S_contig13593:2861..3261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13593 2862..3261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13593.2844.1prot_Ecto-sp13_S_contig13593.2844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13593 2448..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13593.2844.1

>prot_Ecto-sp13_S_contig13593.2844.1 ID=prot_Ecto-sp13_S_contig13593.2844.1|Name=mRNA_Ecto-sp13_S_contig13593.2844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
PPDGDPPQGAEEAEYSPQPCRRGRRRRRQSVAIFVGAGPPARPSFPPRAA
AAATPEAAGSRSGEHRQRGRVRGDEVVVDGRRIRIVVAAATAAGTTSSFL
SLSPSSSSSRKDHPEEGEAATPWLTTPRFEPLRAFPRPIPAAAASAAPAP
LPSSSSQSSSRAAAAAVAAAAADPADSARQCPCCCCSSSSSASARSRRSR
LTSLPQLEASRPPHIANTTARLAPAVGWS
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mRNA from alignment at Ecto-sp13_S_contig13593:2448..3263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13593.2844.1 ID=mRNA_Ecto-sp13_S_contig13593.2844.1|Name=mRNA_Ecto-sp13_S_contig13593.2844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13593:2448..3263+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCTGACGGCGACCCGCCTCAGGGAGCGGAGGAGGCGGAATATTCGCC
CCAGCCGTGTCGACGGGGGCGGCGGCGGCGGCGGCAATCCGTTGCTATTT
TCGTCGGCGCCGGTCCACCCGCTCGACCCTCCTTCCCGCCGCGCGCCGCC
GCGGCGGCTACCCCCGAGGCTGCGGGCTCGCGGTCGGGAGAGCACCGACA
ACGAGGAAGGGTTAGAGGAGATGAAGTCGTTGTTGATGGTCGACGTATCC
GTATCGTCGTGGCCGCCGCCACCGCCGCCGGGACCACCACCGCGCAGCAC
GCGAGTGCCGGCCGTGTGCGAAGAAGACTTAGCCCTGTCCCGCTCCACCA
ACCCTTCGTCTTCTGCCTGCCCCTCCTCCTCCTCCTCCTCGCCGTCCTCC
TCCCCATTTTCTTTCTCCTCGTTCTTATCGCTCTCTCCTTCTTCCTCTTC
TTCGCGAAAAGACCACCCGGAGGAAGGGGAGGCAGCCACCCCATGGTTGA
CAACCCCTCGTTTCGAGCCGCTGAGAGCGTTCCCCCGCCCCATCCCTGCC
GCCGCAGCATCTGCCGCACCAGCGCCCCTCCCTTCCTCTTCGTCCCAGTC
TTCGTCAAGGGCAGCGGCCGCCGCCGTCGCGGCCGCCGCCGCCGACCCCG
CCGACTCCGCTCGCCAGTGCCCTTGCTGCTGTTGCAGCAGCAGCTCCTCC
GCGAGCGCGCGCTCGCGCAGGTCCCGCCTGACGAGTCTGCCCCAGTTGGA
GGCGAGCAGGCCGCCGCACATCGCGAACACCACGGCCAGGTTGGCGCCCG
CAGTCGGGTGGTCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13593:2448..3263+

>mRNA_Ecto-sp13_S_contig13593.2844.1 ID=mRNA_Ecto-sp13_S_contig13593.2844.1|Name=mRNA_Ecto-sp13_S_contig13593.2844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13593:2448..3263+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCTGACGGCGACCCGCCTCAGGGAGCGGAGGAGGCGGAATATTCGCC
CCAGCCGTGTCGACGGGGGCGGCGGCGGCGGCGGCAATCCGTTGCTATTT
TCGTCGGCGCCGGTCCACCCGCTCGACCCTCCTTCCCGCCGCGCGCCGCC
GCGGCGGCTACCCCCGAGGCTGCGGGCTCGCGGTCGGGAGAGCACCGACA
ACGAGGAAGGGTTAGAGGAGATGAAGTCGTTGTTGATGGTCGACGTATCC
GTATCGTCGTGGCCGCCGCCACCGCCGCCGGGACCACCTCCTCGTTCTTA
TCGCTCTCTCCTTCTTCCTCTTCTTCGCGAAAAGACCACCCGGAGGAAGG
GGAGGCAGCCACCCCATGGTTGACAACCCCTCGTTTCGAGCCGCTGAGAG
CGTTCCCCCGCCCCATCCCTGCCGCCGCAGCATCTGCCGCACCAGCGCCC
CTCCCTTCCTCTTCGTCCCAGTCTTCGTCAAGGGCAGCGGCCGCCGCCGT
CGCGGCCGCCGCCGCCGACCCCGCCGACTCCGCTCGCCAGTGCCCTTGCT
GCTGTTGCAGCAGCAGCTCCTCCGCGAGCGCGCGCTCGCGCAGGTCCCGC
CTGACGAGTCTGCCCCAGTTGGAGGCGAGCAGGCCGCCGCACATCGCGAA
CACCACGGCCAGGTTGGCGCCCGCAGTCGGGTGGTCG
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