prot_Ecto-sp13_S_contig1359.2842.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1359.2842.1
Unique Nameprot_Ecto-sp13_S_contig1359.2842.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length313
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1359.2842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 212..237
e-value: 23.0
score: 7.5
coord: 149..176
e-value: 1.7
score: 15.6
coord: 121..148
e-value: 1.1
score: 16.8
coord: 178..205
e-value: 87.0
score: 3.5
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 215..313
coord: 5..252
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 215..313
coord: 5..252
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 98..312
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 121..142
e-value: 0.19
score: 11.8
coord: 149..165
e-value: 0.042
score: 13.9
coord: 238..253
e-value: 0.68
score: 10.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 77..209
e-value: 1.1E-17
score: 65.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 210..313
e-value: 7.2E-11
score: 42.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1359contigEcto-sp13_S_contig1359:13162..17626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1359.2842.1mRNA_Ecto-sp13_S_contig1359.2842.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1359 13036..17626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1359.2842.1 ID=prot_Ecto-sp13_S_contig1359.2842.1|Name=mRNA_Ecto-sp13_S_contig1359.2842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MSISSRSSTSSSEHHGRHDGNESADGYMSDSNFVLTDDKWKATRVYSETK
SDEDERKRENDVQYQHNQPTGKYAYTAACTRLGIAPSSHVLSRLPSSRLS
LRHGLLNPASAAALSAGLSGNRCIRSLNLGSNLLRDDSARPLLEAILGNP
SLTKLDLSRNLLSDDFGVLIARSLSSPLCALKEVVLAENLLSDGFVEALK
NGVRELEEVHGISPLKNLDISNNKISIRGALAAILSSCANLVRLNLSWND
LRTDLKTDLINQKGDCSCPFTNAALWRPGRLVSLELSFNGLSDAFGVTVG
NMLGENDSLSVLD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf