mRNA_Ecto-sp13_S_contig1359.2842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1359.2842.1
Unique NamemRNA_Ecto-sp13_S_contig1359.2842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1359.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1359contigEcto-sp13_S_contig1359:13036..17626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1065
Hectar predicted targeting categoryother localisation
Exons7
Cds size939
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1359.2842.1prot_Ecto-sp13_S_contig1359.2842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1359 13162..17626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.4595666-UTR-Ecto-sp13_S_contig1359:13035..131611681462725.4595666-UTR-Ecto-sp13_S_contig1359:13035..13161Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1359 13036..13161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.4712996-CDS-Ecto-sp13_S_contig1359:13161..132691681462725.4712996-CDS-Ecto-sp13_S_contig1359:13161..13269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 13162..13269 +
1681462725.4803853-CDS-Ecto-sp13_S_contig1359:14162..142831681462725.4803853-CDS-Ecto-sp13_S_contig1359:14162..14283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 14163..14283 +
1681462725.490564-CDS-Ecto-sp13_S_contig1359:14563..147261681462725.490564-CDS-Ecto-sp13_S_contig1359:14563..14726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 14564..14726 +
1681462725.5038505-CDS-Ecto-sp13_S_contig1359:15101..151921681462725.5038505-CDS-Ecto-sp13_S_contig1359:15101..15192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 15102..15192 +
1681462725.5147514-CDS-Ecto-sp13_S_contig1359:15887..160831681462725.5147514-CDS-Ecto-sp13_S_contig1359:15887..16083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 15888..16083 +
1681462725.524864-CDS-Ecto-sp13_S_contig1359:16823..170321681462725.524864-CDS-Ecto-sp13_S_contig1359:16823..17032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 16824..17032 +
1681462725.5333908-CDS-Ecto-sp13_S_contig1359:17575..176261681462725.5333908-CDS-Ecto-sp13_S_contig1359:17575..17626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 17576..17626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1359.2842.1

>prot_Ecto-sp13_S_contig1359.2842.1 ID=prot_Ecto-sp13_S_contig1359.2842.1|Name=mRNA_Ecto-sp13_S_contig1359.2842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MSISSRSSTSSSEHHGRHDGNESADGYMSDSNFVLTDDKWKATRVYSETK
SDEDERKRENDVQYQHNQPTGKYAYTAACTRLGIAPSSHVLSRLPSSRLS
LRHGLLNPASAAALSAGLSGNRCIRSLNLGSNLLRDDSARPLLEAILGNP
SLTKLDLSRNLLSDDFGVLIARSLSSPLCALKEVVLAENLLSDGFVEALK
NGVRELEEVHGISPLKNLDISNNKISIRGALAAILSSCANLVRLNLSWND
LRTDLKTDLINQKGDCSCPFTNAALWRPGRLVSLELSFNGLSDAFGVTVG
NMLGENDSLSVLD
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mRNA from alignment at Ecto-sp13_S_contig1359:13036..17626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1359.2842.1 ID=mRNA_Ecto-sp13_S_contig1359.2842.1|Name=mRNA_Ecto-sp13_S_contig1359.2842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1359:13036..17626+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTGTTGCCTGTTGCACTGCTGTACTGCTGTGAAGCTGTGAAGCTGTG
AAGTCTGAAGTCGTGTTACCTGCTGCACACGAGTACTTTTCCAGCGACAG
CCGGGGTGACATAGAGGTGGACCACCATGTCGATCTCCAGTAGATCTTCA
ACCTCGTCGTCAGAGCACCATGGACGACATGACGGCAACGAAAGTGCTGA
TGGCTACATGTCCGACAGCAACTTTGTGTTGACGGTACGCTCTGATCATG
TGGTCATGTTTTCTCTTCTCCGAGGGAGACGTCTCGTGTGCCCTGCTGTG
TGCCTCTGACCCCGTGTTTCTGCAGACGTGAAAATGTAGGGGGGGTGTCG
TTAACCCATCCAAAGATAGAACAGCAGCGCCGAGCTCGCCACAAATATGT
ACATAACTGTTCGCACGCACGCGAGCGAGCAACGTTGTGCGTTTATTTGG
TCGCTTGCGAAGTATTCCCCGCTGACTACCAGGTTGTGAGTGTGTCGCTG
TCGAGAGGGGGCGGGCACAAAGCAAAAATGATAGGTGCATATTCAGTCAT
TACGCGTGCACGCCAACGTTTCCCCCACGTTGTCTTGGAAACAAATTGCC
AGCGACCGGGCGATGAGCCTACAAAACGTACTTTTACTTCTGCACATGAA
GGTCGAACGTTGCGTGGGGGCAGTACTACGGCTTCATTGCGACTCCGAGG
AGAAATCTTAGCGTGTACATTGACTTTGTTTGACCCCGGCTGGCTGGCGT
GTCAAGCGGGTGCCGAGAGGCTTAGAGGGGCACCCAGAAGAGACGGGATG
GCGCACAAACTCACAAATGGGCTTTGTGCACGTCGGTGCTCCATCATGTT
GCCCTTGTTCCTTCCGAAACGGTGCACGAACGATGAGCAGAGACGACAAA
CACGTGTGTGATGCATTTGATACGATGAGGACCACTAACCGATTTGCAGT
GATCTGAAGTAACTCAAAAGGTTCGTGGTTGTGCGTGGCAATATTTGTTG
AGCCGTGCCCCCAAGCTAGGTACGTTGTCAACAACGTGTTATCTGACAGG
CAATGCTCAGAACCGTTGTATTTTGTACATCTACGTTGTACACTCGCCTA
CAACGTGTTGACACGCAAATCGCGCAGGACGACAAGTGGAAAGCGACGAG
GGTTTATTCAGAAACCAAGTCGGATGAAGACGAGAGGAAACGCGAAAACG
ATGTGCAGTACCAGCATAATCAACCCACTGGCAAATACGCCTACACAGGT
GAAAAACTTTGCATCATGTTTCGGTATTATGTGTCGATGTTGTTGTCAAG
GAGAGCGTGAAACCTTCGAGTGAGAGGAGAATCCTCCCCCAAACCATACA
AATTACGTAAGAATCGTGAATGGCCATTTAAGTTGACATTTGTGGGGGGA
GAGAGAAAGTCGAGCACGCCTCGTCTCAACCGCCATATGGCTCATAAACA
AACTGTGCCACCCCCACGCTGGTATCAACATTGGAACCATTACGGTGCCG
CAATGATTTTGTCCGCTGTGATGCACAGCGGCGTGCACCAGGTTGGGAAT
CGCTCCGTCTTCCCATGTCTTGTCTAGGCTGCCTTCGAGCCGCTTAAGCC
TTCGACACGGGCTTCTAAACCCAGCCTCGGCTGCCGCGCTGTCGGCGGGA
CTATCAGGCAATCGCTGCATTCGGTCACTTAATCTCGGCAGGTGCGACAT
TGACGATTGGACCGATTGATCTGGATTTTCGCGTTAGTAAAATGATTCCG
TATTTTCGTACCTATATACATGCACTGTTGTTTCGGCAATAATTAATCGT
TGTCTGACCTCGATCCAGCACCTCCTCTTTGGTGCTGCATGCACAGCTGA
TAGCATGCAGCCAACCTGTACGACGAGCGCACCGCTCGGCTAGTTTAACA
CGATGTTTTAGGAATTCCACTGCTTCCGTCATGCACGAATCGGACGTAAT
ACCAGACGGCGTCCCCCCACTGGGGTAGTCTGGGCGTTCGAATCGGTTCT
GTTATTCCCGGTGCACAACCGCGTGCCCTCATCGTTCCGCTGCTGTCCGT
GTCGCACTACTTGCAGCAACTTGCTCCGGGATGACAGCGCCCGCCCCTTA
CTGGAAGCAATCCTTGGAAACCCTTCTTTGACAAAGCTGGATCTGTCCAG
GAACTTGGTGAGCTCGATGGTTGGCTACCCAACGCGTCGACAGGTTTCTT
TCACGCTTTGGGATAGTTTCTCGCACGGCGCACGCGAATGGATCAATACG
AAAGGCCTGTGGCTCGTGAGTCCTGCCTATCTCATCTAGTCCCGAAGTAG
GGCCAAGTTCGAGTGGATCAAGCCTTTTGGTCGCTGGAACATGTGTGGGT
GGGGTACTTGGCTTTTTTCTTTTCTTTTCATGGAAATACGCATGGGAAGA
ACTGGGGATGGAAACGTTTCGGGTGGGGGTTCCACGTTGGTTGGAGTTGA
ATGACGTTGTCCGGGCCTTCTTGACAGAGACATCTTCCACCGCTTCGACC
GCCGCGAGTGCTGACGAATGTCCGTAGAACGAGTTTGTGTTTGATCCGTA
GAAGGGACGACATGGTTTGCTTTTTGTTGCCCGTTCAGTCAGCGTTTGCC
AGGGCTCAAGTTGTGAGATACTTCTGGGCGATGGAATCAAAGCCAATAAG
TCGGTTCCTATGAGCTCCCTCAGGGAGCAATGACATTGATTCGAGAACGA
ACCGTCCAACCAGATTGTTTTCATCAAGACTCATCCGTGGGGAAAGCTTC
GGATATCTCAACTAAAACAATTCGTGCTGTGATTTGGTTTTACATTACCG
AACCGTTCTCTCCCGTTGCTTCCTGTTATTTTCCACGCTCTCGATCGTCT
AGCTCAGCGACGATTTCGGAGTACTCATAGCACGAAGCCTTTCTTCTCCG
CTGTGCGCACTGAAAGAAGTGGTTCTTGCTGAGAACCTTCTCTCGGATGG
CTTTGTTGAGGCCCTGAAAAATGGCGTGCGGGAGCTGGAGGAGGTGCACG
GGATCAGCCCCCTGAAGAATCTCGACATCAGCAATAACAAGATTTCCAGT
AGGCAAGAATACCACCGGGAGCAGACCGCGTCCTACCATCTTGTACCGTT
GGTCAAACAGGCAACGCATTAGAGAAGCAAGCTGTGACACTCTTTATGCA
CGCGAACACGGAATTACACGTGCAAGCCTTGGCCTGGAACAATATTTGTT
ACTGTTCGTACGGTAGACTAGTGTTGGTCATCCTCACGTTCTGTTTCGTT
CGGCGTTTGTGTGAAACACGCTTGAATGCAGCAGCAGGACCAGATGCCAT
ACAGGACAGATATGCCCATACTGTGGCAAAGAGGGTTTCTTCCTCGACAA
ACGTTGAGGAGATTGTGCCTTTATCAAGGTGGTCTCCACAACACTGATAG
TTTCCGAGCACGGCATATTTGAGACCATAATTTACCAGTACAAGCTGAGT
AGATTGTGGGAAACTTACTGTGCGGAAGAGGTCAGATGCTGACTACATTA
TTGAGTATGCACCGGAGAACCCATTGGTATCTACGACATTCATGTAAGAA
ACCCGTGAACAACAACGCCAGTCGTCAATAGTTTCGATTCAAGATGTTAT
TCTCAAGATCTACGACTGTTTCATGCGACAGTGTCATCATGAACATCTGA
ATGTTGCATTAGAACGTTTTGAAGATGGGTTGACAGCTGTACAATGTAGG
ACCTGAAACAGCATCCCCTCCCCGTCTACCGTAAACCAATATCTACCCTG
CCCTCGCACGCGACATCAATGATGTCCGGGCGGTAGAGTTCGTGGAGCCT
TGGCCGCGATATTGAGCAGCTGTGCAAACTTGGTAAGGCTGAACCTGAGC
TGGAACGATCTGAGGACTGATCTCAAGACCGATCTAATAAACCAGAAGGG
CGACTGCAGCTGTCCATTTACTAACGCCGCCCTGTGGCGCCCAGGGCGGC
TGGTCAGCCTAGAGCTGTCGTTCAACGGCCTGTCCGATGCCTTTGGGGTA
AGTGTGTCTCCATGTCTCTCATGTCTCTTATGTGCTATCGCGGTGTCGGG
TCTTGTACGCTTAGGCTTGGCGGTAGGGTTTGGTTCGAAGATAGCGGCAC
TAAGTGTGCAATATACATGACAGTGGTAAGCTCAAGGACTTCTTTCACCT
GATACGGATACAGTTTCACGGGCGAATGGACGAGTAGGTTCCTCCAACGG
TCTGGAAATGCCGCTTTCTTTGAAGAAGAGCCTGGCCGACGCGACCGTTA
CGGTATGTTGCATGACGCGAACCGAACAAGCAAAGAAAATACTCTTGGTC
TCGCAGACAGAGTAGCCTTCCGCGTACATGTTGCGCTCACAACCACTTGA
AGCTTAAACCTACTTCATATAGGGTTAGCTGTTGACGGGATGGTTTCGAA
TGACTGATGGATGACCATTTTGTCAAACTAGCATGACAGGTAGAGATAGT
GTGACAAGGAGAATATCGCTGCCAACAACCGCAGCCACAGCGGCCAAAAA
TGCACGTTGGATGCTCTGTGGATGCCACTGCTGCACACAGGTGACTGTCG
GCAATATGCTGGGAGAAAACGACTCCTTGTCAGTGCTGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1359:13036..17626+

>mRNA_Ecto-sp13_S_contig1359.2842.1 ID=mRNA_Ecto-sp13_S_contig1359.2842.1|Name=mRNA_Ecto-sp13_S_contig1359.2842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1359:13036..17626+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGATCTCCAGTAGATCTTCAACCTCGTCGTCAGAGCACCATGGACG
ACATGACGGCAACGAAAGTGCTGATGGCTACATGTCCGACAGCAACTTTG
TGTTGACGGACGACAAGTGGAAAGCGACGAGGGTTTATTCAGAAACCAAG
TCGGATGAAGACGAGAGGAAACGCGAAAACGATGTGCAGTACCAGCATAA
TCAACCCACTGGCAAATACGCCTACACAGCGGCGTGCACCAGGTTGGGAA
TCGCTCCGTCTTCCCATGTCTTGTCTAGGCTGCCTTCGAGCCGCTTAAGC
CTTCGACACGGGCTTCTAAACCCAGCCTCGGCTGCCGCGCTGTCGGCGGG
ACTATCAGGCAATCGCTGCATTCGGTCACTTAATCTCGGCAGCAACTTGC
TCCGGGATGACAGCGCCCGCCCCTTACTGGAAGCAATCCTTGGAAACCCT
TCTTTGACAAAGCTGGATCTGTCCAGGAACTTGCTCAGCGACGATTTCGG
AGTACTCATAGCACGAAGCCTTTCTTCTCCGCTGTGCGCACTGAAAGAAG
TGGTTCTTGCTGAGAACCTTCTCTCGGATGGCTTTGTTGAGGCCCTGAAA
AATGGCGTGCGGGAGCTGGAGGAGGTGCACGGGATCAGCCCCCTGAAGAA
TCTCGACATCAGCAATAACAAGATTTCCATTCGTGGAGCCTTGGCCGCGA
TATTGAGCAGCTGTGCAAACTTGGTAAGGCTGAACCTGAGCTGGAACGAT
CTGAGGACTGATCTCAAGACCGATCTAATAAACCAGAAGGGCGACTGCAG
CTGTCCATTTACTAACGCCGCCCTGTGGCGCCCAGGGCGGCTGGTCAGCC
TAGAGCTGTCGTTCAACGGCCTGTCCGATGCCTTTGGGGTGACTGTCGGC
AATATGCTGGGAGAAAACGACTCCTTGTCAGTGCTGGAT
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