mRNA_Ecto-sp13_S_contig1359.2841.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1359.2841.1
Unique NamemRNA_Ecto-sp13_S_contig1359.2841.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: D7G9J1_ECTSI (Chromosome 10 open reading frame 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J1_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 1.300e-110
Identity = 216/252 (85.71%), Postives = 216/252 (85.71%), Query Frame = 3 
Query:  654 MAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGFAPATPDGNADDRHGRNFRETSAGEGHDLIRQAVAAAGGTQTGTKKRNRPSRWGDRLDLSERTAAAAGASGGDSGRLAAEAGGGASAGDDAFRKAWAGELERDRTAEDEMDDYLSSLLL 1409
            MAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQ   XXXXXXXXXXXXXXXXXXXXXXXXXX   SG   ATPDGNADDRHGR  RETSAGEGHDLIRQAVAAAGGTQT  KKRNRPSRWGDRLD SERTA                    A AGDDA RKAWAGELERDRTAEDEMDDYLSSLLL
Sbjct:    1 MAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQRKAXXXXXXXXXXXXXXXXXXXXXXXXXXSSPSGSVSATPDGNADDRHGRKLRETSAGEGHDLIRQAVAAAGGTQTDAKKRNRPSRWGDRLDSSERTAXXXXXXXXXXXXXXXXXX--AMAGDDASRKAWAGELERDRTAEDEMDDYLSSLLL 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: L8GSW9_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW9_ACACA)

HSP 1 Score: 153 bits (387), Expect = 7.250e-40
Identity = 80/173 (46.24%), Postives = 115/173 (66.47%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKK 929
            MNA+ +H+  IR+Y  Y+   K+P+        +P +   +D++ L++Q+RF+R   ED RA  +R          AWE R+A +YY+ L++EY +ADL+RYRE +VG+RWR EK+V+ GKGQF CG   C+ ++DL SYE+NF+Y EAG  KN LVK+R+CP CA KL  KK
Sbjct:    1 MNAYERHQRYIRDYVLYYGRGKLPA--------VPQKPTKSDDDILKQQYRFIRTE-EDDRADDSR---------EAWEKRLARRYYERLYREYCIADLTRYREGQVGMRWRVEKEVIIGKGQFICGNKHCEAKEDLKSYEVNFQYAEAGETKNALVKLRLCPPCAYKLNYKK 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A7S2WRJ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRJ6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.130e-40
Identity = 80/142 (56.34%), Postives = 103/142 (72.54%), Query Frame = 3 
Query:  492 AIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKL 917
            A++   LP  + +TD++ LR+ HRFV  H+ED        L G E    +WE RM+ KYYK LFKEYALAD+SRYRE K+GLRWRTE++VV GKGQF CG  +C  R  LHS+E+NFKYKE G V+NELVK+R+C +CA+K+
Sbjct:   11 AMDVGALP-TRTVTDQDVLRKHHRFVI-HDED--------LSGME---NSWETRMSIKYYKKLFKEYALADMSRYREGKIGLRWRTEQEVVDGKGQFVCGNKKCDTRDGLHSFEVNFKYKEHGTVRNELVKLRLCRRCAKKM 139
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A7S1SWE2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWE2_9CHLO)

HSP 1 Score: 148 bits (374), Expect = 4.800e-39
Identity = 82/180 (45.56%), Postives = 112/180 (62.22%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRL-TDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRR 947
            +NA+ +H++ + +Y  ++   K+PS         PG   + TD ++++  HRF+R   +D                  WEV++A KYY  LFKEY LADLSRY+E K+G+RWRTEK+VVSGKGQF CG  +C  R+ L SYE+NF YKEAG  K  LVK+RVCP+CA KL   + +A RR
Sbjct:   12 LNAYERHKKFVHDYLTFY-GGKLPSRE-------PGDATVKTDWDSVKEHHRFLRSEEDDKEL--------------TWEVKLARKYYAKLFKEYCLADLSRYKESKIGMRWRTEKEVVSGKGQFVCGNKQCGNRQGLGSYEVNFGYKEAGEHKQALVKLRVCPECADKLNYNRKKAYRR 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A5J4XDC7_9CHLO (FRA10AC1 domain-containing (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC7_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 1.100e-38
Identity = 84/177 (47.46%), Postives = 110/177 (62.15%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEAL 941
            ++AF +H+ L++N  +Y+     P    ++          TD + L+ Q+RFVR   +DS                +W+VRMA +YY  LFKEYA+ADLSRYRE KVGLRWRTE++VV GKGQF CGA  C ER+ L SYE+NF YKEAG  K  LVKVRVCP+ A +L  K+ + L
Sbjct:   25 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDDS--------------TDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A8K1C360_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C360_PYTOL)

HSP 1 Score: 150 bits (378), Expect = 2.110e-38
Identity = 90/180 (50.00%), Postives = 111/180 (61.67%), Query Frame = 3 
Query:  402 GGAMNAFAQ-HRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEA 938
            G AM A  + H+EL+R Y     +    ++            R  D +ALRR  +F+RD  ED +    RG E        W+VRM+ +YY+ LF+EYALADLSRY E K+GLRWRTE++VVSGKGQF CG  RC ER+ LHSYEL F Y E G  K  LVKVR C  CARKLF KK++A
Sbjct:   18 GEAMEAIHERHQELMRVYQDATQHEHADATDV----------RPEDLDALRRNFQFIRDDEEDIK----RGSED-------WQVRMSVRYYRQLFREYALADLSRYEEGKIGLRWRTEQEVVSGKGQFSCGNKRCDERRRLHSYELLFAYVEQGEKKRCLVKVRACEACARKLFYKKLKA 176
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A5J4XDC1_9CHLO (FRA10AC1 domain-containing n=2 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC1_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 8.620e-38
Identity = 84/177 (47.46%), Postives = 110/177 (62.15%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEAL 941
            ++AF +H+ L++N  +Y+     P    ++          TD + L+ Q+RFVR   +DS                +W+VRMA +YY  LFKEYA+ADLSRYRE KVGLRWRTE++VV GKGQF CGA  C ER+ L SYE+NF YKEAG  K  LVKVRVCP+ A +L  K+ + L
Sbjct:   76 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDDS--------------TDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 228
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A1Y1IE55_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE55_KLENI)

HSP 1 Score: 148 bits (374), Expect = 1.440e-37
Identity = 82/182 (45.05%), Postives = 113/182 (62.09%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKV-PSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKL-FRKKIEALRRQ 950
            +NA+ +H+  + +Y +++ + K  P    ++          TD + LR  +RF+R   +D+               T+WE R+A +YY  LFKEY +ADLSRY+E KVGLRWRTEK+VV+GKGQF CG     ER  L SYE+NF YKEAG  KN LVK+R+CP+CA KL +RK+ E  R+Q
Sbjct:   28 LNAYDRHKRFVEDYVKFYGDGKYEPPKAPVK----------TDSDILRESYRFLRSDEDDA--------------DTSWEARLAKRYYDKLFKEYCIADLSRYKESKVGLRWRTEKEVVAGKGQFICGNKEHGERNGLRSYEVNFAYKEAGEEKNALVKLRLCPKCAYKLNYRKEKELARQQ 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: W2RGE5_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RGE5_PHYPN)

HSP 1 Score: 147 bits (371), Expect = 2.100e-37
Identity = 85/184 (46.20%), Postives = 111/184 (60.33%), Query Frame = 3 
Query:  405 GAMNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKR---LTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRR 947
            G+   F +H+EL+R Y      +   SS A     +P + +     D E L++  +F+RD  ED           A+   T W+VRM+ +YY+ LF+EYALADLSRY+E K+GLRWRTE +V++GKGQF CG  RC ER  LHSYEL F Y E G  K  LVKVR C  CA KLF KK+  +R+
Sbjct:   13 GSERMFRRHQELMRLYSSSTRRSNSVSSDASSI--VPRRDKHVSQNDLEVLKQNFQFIRDDEED-----------AKKGETDWQVRMSVRYYRQLFREYALADLSRYKEGKIGLRWRTETEVIAGKGQFSCGNKRCDERTGLHSYELLFAYIEHGERKRCLVKVRACSACAEKLFYKKLVEMRK 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Match: A0A835Z2P9_9STRA (Folate-sensitive fragile site protein Fra10Ac1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.980e-37
Identity = 85/182 (46.70%), Postives = 116/182 (63.74%), Query Frame = 3 
Query:  411 MNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDEEALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGA--VKNELVKVRVCPQCARKLFRKKIEALRRQ 950
            M+A+ +H+ L+R+Y    L  K    G     GLP     TD + L R ++F+RD             E A+A  ++WEVRMA KYY+ L KEYA+ DLSR+R+  VGLRWRTE +V+ GKGQ+ECGA  C  R DLHSYE+NF + +A     +NELVKVR+C  CA+KL+ +K++ LRR+
Sbjct:    1 MSAYDKHKRLMRSY----LQHKQEGGGG----GLPAGPE-TDMDILVRHNQFIRD-------------EEADAKSSSWEVRMALKYYQRLCKEYAICDLSRHRDGAVGLRWRTEGEVLGGKGQWECGARGCDARDDLHSYEVNFAFVDAATREARNELVKVRMCADCAQKLYYRKLKELRRR 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1359.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9J1_ECTSI1.300e-11085.71Chromosome 10 open reading frame 4 n=1 Tax=Ectocar... [more]
L8GSW9_ACACA7.250e-4046.24Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S2WRJ6_9STRA8.130e-4056.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1SWE2_9CHLO4.800e-3945.56Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A5J4XDC7_9CHLO1.100e-3847.46FRA10AC1 domain-containing (Fragment) n=1 Tax=Treb... [more]
A0A8K1C360_PYTOL2.110e-3850.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5J4XDC1_9CHLO8.620e-3847.46FRA10AC1 domain-containing n=2 Tax=Trebouxia sp. A... [more]
A0A1Y1IE55_KLENI1.440e-3745.05Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
W2RGE5_PHYPN2.100e-3746.20Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A835Z2P9_9STRA3.980e-3746.70Folate-sensitive fragile site protein Fra10Ac1-dom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1359contigEcto-sp13_S_contig1359:8892..12932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score341.7
Seed ortholog evalue4.7e-91
Seed eggNOG ortholog2880.D7G9J1
Preferred nameFRA10AC1
Model size1412
KEGG koko:K01230,ko:K01363,ko:K13121
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04140,ko04141,ko04142,ko04210,ko04612,ko04621,ko04924,map00510,map00513,map01100,map04140,map04141,map04142,map04210,map04612,map04621,map04924
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Folate-sensitive fragile site protein Fra10Ac1
EggNOG OGsKOG1297@1,KOG1297@2759
Ec32 ortholog descriptionFolate-sensitive fragile site protein Fra10Ac1
Ec32 orthologEc-00_011460.1
EC3.2.1.113,3.4.22.1
Cds size1173
COG Functional cat.S
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01002,ko03041,ko03110,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1359.2841.1prot_Ecto-sp13_S_contig1359.2841.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1359 8892..12693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.3739822-CDS-Ecto-sp13_S_contig1359:8891..94191681462725.3739822-CDS-Ecto-sp13_S_contig1359:8891..9419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 8892..9419 -
1681462725.3847191-CDS-Ecto-sp13_S_contig1359:9741..98521681462725.3847191-CDS-Ecto-sp13_S_contig1359:9741..9852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 9742..9852 -
1681462725.3929758-CDS-Ecto-sp13_S_contig1359:10248..103091681462725.3929758-CDS-Ecto-sp13_S_contig1359:10248..10309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 10249..10309 -
1681462725.4010842-CDS-Ecto-sp13_S_contig1359:10647..107571681462725.4010842-CDS-Ecto-sp13_S_contig1359:10647..10757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 10648..10757 -
1681462725.4091063-CDS-Ecto-sp13_S_contig1359:11654..117991681462725.4091063-CDS-Ecto-sp13_S_contig1359:11654..11799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 11655..11799 -
1681462725.417109-CDS-Ecto-sp13_S_contig1359:12475..126931681462725.417109-CDS-Ecto-sp13_S_contig1359:12475..12693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1359 12476..12693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.4275322-UTR-Ecto-sp13_S_contig1359:12693..129321681462725.4275322-UTR-Ecto-sp13_S_contig1359:12693..12932Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1359 12694..12932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1359.2841.1

>prot_Ecto-sp13_S_contig1359.2841.1 ID=prot_Ecto-sp13_S_contig1359.2841.1|Name=mRNA_Ecto-sp13_S_contig1359.2841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp
MARRNEEYARLNSGGGYTQALTVGKGFSGADRSAAKQGAGNKGSSGSSRS
GTRSGGAMNAFAQHRELIRNYHRYHLNAKVPSSGAIEAKGLPGQKRLTDE
EALRRQHRFVRDHNEDSRAQQARGLEGAEADPTAWEVRMAAKYYKLLFKE
YALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELN
FKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQRQAEAQMKEQESE
TNSDGERRRKRGKASTPSPSGFAPATPDGNADDRHGRNFRETSAGEGHDL
IRQAVAAAGGTQTGTKKRNRPSRWGDRLDLSERTAAAAGASGGDSGRLAA
EAGGGASAGDDAFRKAWAGELERDRTAEDEMDDYLSSLLL*
back to top

mRNA from alignment at Ecto-sp13_S_contig1359:8892..12932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1359.2841.1 ID=mRNA_Ecto-sp13_S_contig1359.2841.1|Name=mRNA_Ecto-sp13_S_contig1359.2841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1359:8892..12932- (Ectocarpus species13 EcNAP12_S_4_19m)
TATGTAGACAACGTATTGCGCGGGCGGGAGTGAGCAACCGACAAAACGCG
CTACGCTTGGGCGAGGAAGAAGACAGGCCGCAGGTCGTGATTGATTGTCC
TGCCTGTGTGCCCTTTGGCAGGCTGCACCTAGAAAGCGCTGTGTAAAGCG
AAATTACAATTGGTACTTCTTCACGTCACCGAGAGGTTACCAGATACCGC
ATCAAGTACAGCAGCCGTAGCAGTGTACCGCCGAGGCAAATGGCTCGACG
AAATGAGGAGTACGCTCGCCTCAATTCCGGAGGTGGCTACACGCAAGCTT
TGACTGTCGGCAAGGGGTTCTCGGGTGCCGACAGGAGTGCTGCAAAGCAA
GGCGCCGGTAACAAGGGCAGCAGCGGCAGCAGCAGGAGCGGCACCAGGAG
CGGGGGTGCGATGAACGCCTTTGCTCAACACCGGGAGCTGATCCGTAACT
ATCACAGGTATGCTTTGGGTACGTTAGTTACCGGTTGCTCGAGTGTGTGA
GCAGCTGGAGGTGTGGCATTGCCGTCCTCAGGGTTCCCGCAAAGATTTGG
TTCGCCGAAGTCTTTGAGGGGGACATCGTACATGCCTACCGCAGCGTGCG
ACAGCAAGCAGTACAAGAGCCTACAATTGTGTCGCGATCCGTTCCAGCAG
TGCAGACGGTGCCCTCTCCGTCTCAGTGGGCACGACCAAGTGCTTGATAT
TAAACAGCTGTACACAGGGCTCGCACTTGTACCCATCTTCCTTTTTTGTG
GAATTTGCTGTGCCCTCTGCGCGGCATCGGATAGCCCACGATCATCATCT
AACTTGAGCATGCCTTGGTGATATGGTGTACAGGTTGTTTGCTTGCCGTT
GAAACCAACAGGCCAGGGGGACGAACATACCGGCAGCCTCGAGAAATTTA
TAGAACAAAATATCGTACGGTTGTGGCTAAACTTGTATACAGGAGCGTGC
AAAACACCAGGCTTAACGGATTTGACCTACCGGGTGTGTGTGCTCGGGTG
ACTCCGAAAAACAAACCAACAATGCCGACTTGTGTCTGGCGTGGACTTTC
CGGTGCGGCGTCATTAGAGCGTCTCACAGACGTCATTCTTCCGCCTCTTC
CGGGTCTTACCCCCTCGGCTTGGTTTGAGGCAGGTACCACCTCAACGCGA
AGGTGCCATCATCAGGAGCGATAGAGGCCAAGGGGTTGCCAGGGCAAAAG
CGTTTGACTGACGAAGAGGCCTTGCGGCGGCAACACCGCTTCGTGCGCGA
TCACAATGAGGACAGCCGGGCACAGCAGGCAAGATGGAAAATACTGCCAT
CGGATTGGCGGGAAAGCAAAGGAGGGCATGATGGGGGTCACTTCTTCGTT
TTATGGCTTATTCCCGGGTGATATCTTGTGTTGAACCTTCGTCGTTTTTT
CTTTTCCCTCGTCCTTCTTCAACAGGTGATTTGATGGTCTAAATCTTCGT
TGTATCTTTATCGATTACACATATCTCCACGATGGGCTCTAGTGCTTCAG
CAGACATGTTCTCAGGCTACATTGTTAACTACCGACAACAACTTGACGTG
ATTGATGCTCGACACGTTTCGGTACGTCCTCAATCACGTCAAAAGATGAG
TTTCTACAGCTACTATTCTCTCTGAGCCGGTCTCCCTTGCCCGTGATGGC
TTGGCGTGGTAGGGTTCATACGGTAGCAAGACAGGGAAGGGGCTACGTCT
CTTCACTTACGGACGGTGCCTTGCGTAGACCTCTCTTCTTTTTATATCCC
TGTATGCTGGTGCGCAGAAGTTGCGACATGGTCGCTTTTGCAGGACAAGG
TCATGACATGCCTTGTCATCTGTTGGAGGTTGGCTCAATTTTGATGCGGC
ATCTTCCTGGGGCAATGGTTGTCAACCATTCCCTTCCTTTTCGCGTAACA
TCCTCGATGGTCCGTTTTTGTCCCTTTGTTCCAAAGTCGATGGGCTGGGA
CGGATAGAAACTCTCAAGATCAGTCAGCACATCTATTGTACCGAATTTTT
GTTCTCTCGATTGAGAAATCCTTTCAAATGTTGACACTACGTGTTTATAA
AGAGACACTGTCTCTCCTTGCTGTTGCCTTTGTCCTTGCTGGCGCTCTAA
CCTTGTCTAGTCCTACCCGGTTCTATTGTGTACCCGCGGCATGCTATCGG
GGTCATTGCGACAATGTCACTGCAGGCAAGGGGACTGGAAGGAGCAGAGG
CGGATCCTACGGCTTGGGAAGTGCGCATGGCAGCGAAGTACTACAAACTT
CTCTTCAAGGAGTATGCGCTGGCAGACCTCTCGAGGTAACGAACGTCGCT
TGCTGCTACTATCGGTGGCACCGGCCTGGAAATGTGGTGTATTTGAGAGG
GCCATCCCACGCGGAACGTTTTGCCAGATACCCGAACCAGCTTTGCTCTC
TGACGGGTGTACCGTGTGGCAAATTTATTTTGGTTGTACCGATCTTCGAA
GTAGCCCACTCGCTCGACAACGATGGAAGCACTACATCGGTAGTACTGTG
ACGCTTTGGCTCTATATCTCAGCGAGGACTCTCTCTGTCTTAATGTTCAT
GTCTGGGAGAGGCGGTTCAACAGGAGTTTCCCCGCATGCTTTAAGTTACA
TTTCATGCCTGCCCTTACACCAGGTATCGAGAAGACAAAGTCGGGCTGCG
GTGGAGAACAGAGAAAGATGTCGTAAGCGGGAAGGTGAGCGTAGTCCGTT
GCAGTAACACAATGTACCGTAGAAGACTAAACAAGTTGTACTACTGCTTG
GTGCAATTGCACGACACCCTTTGGCGCTACATATTGTGGTATGAGGCTGG
CATAGGGAAGCGCACCGATGAACGTTCATCCACAGAAATGCTAAGGTCGT
CGTCGACAGTTATTTTGGCGAACGGCGCGACTGCTATGTCACGTGCGTAC
ATGAAGAATGGGGTACATGTATGGTCCCAACTGTAAGTCGCTTGGCGTAG
CGTGTAAACAACCAGCACATATGCATATCTACCGCCCCATCAAATGGCGC
TGTTTGTGTTGCGTGAATTCGACTGCTGAGCATTCGTAACACTTGAACCT
GACCCTTTTTCTTTTTCCACCCACTGCCAGGGACAGTTCGAATGTGGAGC
TTTGAGGTGCCAGGAGAGAAAGGATCTCCACAGCTACGAGCTGAACTTCA
AGTACAAAGAGGCCGGTGCGGTCAAGAATGAGCTAGTCAAGGTACTGAAA
CTGAGCGTCAAGAATTGAAACACACAATACACGATGGATGTCGTCGGTGT
ACTGACAACTCAAGTTTTTCCAGCGCGTTTGGCGACGATTTGTGCCTTTG
GAGTGGCCAAGGCAGACCACTGGCGACGACGAGATTCTGCGGCAAAGCGA
ATCAACTACGAGTAGCCTTTTTCTCTCATCTCGTGACTTGGTGTGAAGGA
TATGATAGGGGTGGACCATCTTCAAAGTTTTTCGATTTGCAAGCCCTTCA
ACCGCGGTAGACCTATTTCCAAGCGTGTACACGCTCACACCAACACACGC
GGGTGTGTCCCAGGTACGCGTGTGCCCGCAGTGCGCGCGGAAATTGTTCC
GAAAAAAGATCGAGGCGTTGAGGCGTCAACGCCAGGCGGAAGCACAAATG
AAAGAGCAAGAAAGTGAGACCAACAGCGACGGGGAACGACGACGAAAGAG
AGGAAAAGCGTCAACACCGTCGCCGTCAGGATTTGCACCAGCCACTCCAG
ACGGGAACGCCGACGACAGGCACGGAAGAAACTTTCGAGAAACTTCTGCT
GGAGAGGGGCACGACTTGATTCGCCAGGCAGTGGCAGCGGCGGGGGGCAC
ACAGACTGGCACCAAAAAGCGCAACAGGCCGTCGAGGTGGGGGGACAGAC
TGGATTTGTCGGAAAGAACAGCAGCAGCTGCTGGTGCGAGTGGCGGTGAC
AGTGGTAGGTTGGCGGCGGAGGCGGGTGGAGGTGCCAGCGCTGGTGACGA
CGCGTTCAGGAAGGCGTGGGCGGGAGAGTTGGAGAGGGACCGGACGGCGG
AAGATGAAATGGACGATTACCTCTCGTCTCTGCTCCTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1359:8892..12932-

>mRNA_Ecto-sp13_S_contig1359.2841.1 ID=mRNA_Ecto-sp13_S_contig1359.2841.1|Name=mRNA_Ecto-sp13_S_contig1359.2841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1359:8892..12932- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGACGAAATGAGGAGTACGCTCGCCTCAATTCCGGAGGTGGCTA
CACGCAAGCTTTGACTGTCGGCAAGGGGTTCTCGGGTGCCGACAGGAGTG
CTGCAAAGCAAGGCGCCGGTAACAAGGGCAGCAGCGGCAGCAGCAGGAGC
GGCACCAGGAGCGGGGGTGCGATGAACGCCTTTGCTCAACACCGGGAGCT
GATCCGTAACTATCACAGGTACCACCTCAACGCGAAGGTGCCATCATCAG
GAGCGATAGAGGCCAAGGGGTTGCCAGGGCAAAAGCGTTTGACTGACGAA
GAGGCCTTGCGGCGGCAACACCGCTTCGTGCGCGATCACAATGAGGACAG
CCGGGCACAGCAGGCAAGGGGACTGGAAGGAGCAGAGGCGGATCCTACGG
CTTGGGAAGTGCGCATGGCAGCGAAGTACTACAAACTTCTCTTCAAGGAG
TATGCGCTGGCAGACCTCTCGAGGTATCGAGAAGACAAAGTCGGGCTGCG
GTGGAGAACAGAGAAAGATGTCGTAAGCGGGAAGGGACAGTTCGAATGTG
GAGCTTTGAGGTGCCAGGAGAGAAAGGATCTCCACAGCTACGAGCTGAAC
TTCAAGTACAAAGAGGCCGGTGCGGTCAAGAATGAGCTAGTCAAGGTACG
CGTGTGCCCGCAGTGCGCGCGGAAATTGTTCCGAAAAAAGATCGAGGCGT
TGAGGCGTCAACGCCAGGCGGAAGCACAAATGAAAGAGCAAGAAAGTGAG
ACCAACAGCGACGGGGAACGACGACGAAAGAGAGGAAAAGCGTCAACACC
GTCGCCGTCAGGATTTGCACCAGCCACTCCAGACGGGAACGCCGACGACA
GGCACGGAAGAAACTTTCGAGAAACTTCTGCTGGAGAGGGGCACGACTTG
ATTCGCCAGGCAGTGGCAGCGGCGGGGGGCACACAGACTGGCACCAAAAA
GCGCAACAGGCCGTCGAGGTGGGGGGACAGACTGGATTTGTCGGAAAGAA
CAGCAGCAGCTGCTGGTGCGAGTGGCGGTGACAGTGGTAGGTTGGCGGCG
GAGGCGGGTGGAGGTGCCAGCGCTGGTGACGACGCGTTCAGGAAGGCGTG
GGCGGGAGAGTTGGAGAGGGACCGGACGGCGGAAGATGAAATGGACGATT
ACCTCTCGTCTCTGCTCCTGTGA
back to top