mRNA_Ecto-sp13_S_contig13587.2840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13587.2840.1
Unique NamemRNA_Ecto-sp13_S_contig13587.2840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13587.2840.1 vs. uniprot
Match: D7FGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.810e-41
Identity = 93/130 (71.54%), Postives = 98/130 (75.38%), Query Frame = 2 
Query:    5 QKPERTQRVEAQTPGPKEGVTRSARGTSEARDSTDWPPDGXXXXXXXXXXXXXXXXXCETTSSTLGDSTPCGTKSPTVLSKTVSVRAKIEMFERTARSA-GEEGRNRSRSLGSPAACHRQPLGRSFSAKA 391
            QKP RTQRV AQ PG +EG+TRS RGTSEARDSTD PPDG                 CE TSSTLG +TP   KSPT LSK+VSVRAKIEMFERTARSA GEEGRNRS SLG+PAACHRQPLGRS SAKA
Sbjct:  786 QKPARTQRVGAQVPGGEEGITRSPRGTSEARDSTDGPPDGGGQSKEPAASATTAVGACEVTSSTLGGTTPRDPKSPTALSKSVSVRAKIEMFERTARSAAGEEGRNRSSSLGTPAACHRQPLGRSLSAKA 915
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13587.2840.1 vs. uniprot
Match: A0A6H5K662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K662_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.040e-34
Identity = 81/112 (72.32%), Postives = 82/112 (73.21%), Query Frame = 2 
Query:   59 GVTRSARGTSEARDSTDWPPDGXXXXXXXXXXXXXXXXXCETTSSTLGDSTPCGTKSPTVLSKTVSVRAKIEMFERTARSA-GEEGRNRSRSLGSPAACHRQPLGRSFSAKA 391
            GVTRS RGTSEARDSTDWPPDG                 CE TSSTLG STP   KSP+ LSKTVSVRAKIEMFERTARSA G EGR RS SLG PAACHRQPLGRS SAKA
Sbjct:  809 GVTRSPRGTSEARDSTDWPPDGGGQSKEFAASATTVVVACEATSSTLGGSTPRDPKSPSALSKTVSVRAKIEMFERTARSAAGGEGRKRSSSLGPPAACHRQPLGRSLSAKA 920
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13587.2840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGT4_ECTSI9.810e-4171.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K662_9PHAE5.040e-3472.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13587contigEcto-sp13_S_contig13587:781..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size633
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_000940.1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.3238742-UTR-Ecto-sp13_S_contig13587:780..8991681462725.3238742-UTR-Ecto-sp13_S_contig13587:780..899Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13587 781..899 +
1681462725.3458092-UTR-Ecto-sp13_S_contig13587:1361..14131681462725.3458092-UTR-Ecto-sp13_S_contig13587:1361..1413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13587 1362..1413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.3359008-CDS-Ecto-sp13_S_contig13587:899..13611681462725.3359008-CDS-Ecto-sp13_S_contig13587:899..1361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13587 900..1361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13587.2840.1prot_Ecto-sp13_S_contig13587.2840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13587 900..1361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13587.2840.1

>prot_Ecto-sp13_S_contig13587.2840.1 ID=prot_Ecto-sp13_S_contig13587.2840.1|Name=mRNA_Ecto-sp13_S_contig13587.2840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MEGGNRRSLLLPLQLSLLFARRLRRHWATAPPAAPRARPSSRRPCRFGPR
SRCSSEQPGRRERRGGIEAGPWGHRQRATGNPWGARSRRKREWAFLANVD
HSQLPPALKNGGLAKALSFPSSPRLGRGGSTPGFVANMTDPIADKGVVSS
HGS*
back to top

mRNA from alignment at Ecto-sp13_S_contig13587:781..1413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13587.2840.1 ID=mRNA_Ecto-sp13_S_contig13587.2840.1|Name=mRNA_Ecto-sp13_S_contig13587.2840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13587:781..1413+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCCAGAAACCAGAGAGAACACAGAGGGTCGAAGCTCAGACTCCCGGCC
CAAAAGAAGGGGTCACACGGAGCGCCCGCGGGACCAGCGAAGCGAGAGAC
TCAACCGATTGGCCACCGGATGGAGGGGGGCAATCGAAGGAGCCTGCTGC
TTCCGCTACAACTGTCGTTGTTGTTTGCGAGACGACTTCGTCGACATTGG
GCGACAGCACCCCCTGCGGCACCAAGAGCCCGACCGTCCTCTCGAAGACC
GTGTCGGTTCGGGCCAAGATCGAGATGTTCGAGCGAACAGCCCGGTCGGC
GGGAGAGGAGGGGAGGAATAGAAGCAGGTCCTTGGGGTCACCGGCAGCGT
GCCACCGGCAACCCCTGGGGCGCTCGTTCTCGGCGAAAGCGAGAGTGGGC
CTTTTTGGCAAACGTTGACCACTCTCAACTGCCGCCGGCTTTGAAAAACG
GCGGCTTGGCCAAAGCGCTTTCCTTCCCGTCGTCTCCTCGGTTGGGAAGG
GGTGGTTCCACGCCCGGCTTTGTGGCCAACATGACGGACCCCATTGCCGA
CAAGGGAGTTGTGAGTTCACACGGATCTTGATGATCTAGGCTGCTGCCGC
GACGGTGGTGTCAGCACCGCACGTCCGCTAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13587:781..1413+

>mRNA_Ecto-sp13_S_contig13587.2840.1 ID=mRNA_Ecto-sp13_S_contig13587.2840.1|Name=mRNA_Ecto-sp13_S_contig13587.2840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13587:781..1413+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGGGGCAATCGAAGGAGCCTGCTGCTTCCGCTACAACTGTCGTT
GTTGTTTGCGAGACGACTTCGTCGACATTGGGCGACAGCACCCCCTGCGG
CACCAAGAGCCCGACCGTCCTCTCGAAGACCGTGTCGGTTCGGGCCAAGA
TCGAGATGTTCGAGCGAACAGCCCGGTCGGCGGGAGAGGAGGGGAGGAAT
AGAAGCAGGTCCTTGGGGTCACCGGCAGCGTGCCACCGGCAACCCCTGGG
GCGCTCGTTCTCGGCGAAAGCGAGAGTGGGCCTTTTTGGCAAACGTTGAC
CACTCTCAACTGCCGCCGGCTTTGAAAAACGGCGGCTTGGCCAAAGCGCT
TTCCTTCCCGTCGTCTCCTCGGTTGGGAAGGGGTGGTTCCACGCCCGGCT
TTGTGGCCAACATGACGGACCCCATTGCCGACAAGGGAGTTGTGAGTTCA
CACGGATCTTGA
back to top