mRNA_Ecto-sp13_S_contig13583.2837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13583.2837.1
Unique NamemRNA_Ecto-sp13_S_contig13583.2837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13583.2837.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 8.850e-99
Identity = 190/208 (91.35%), Postives = 197/208 (94.71%), Query Frame = 1 
Query:  385 EGEPPLHATSPTLAAAAAQQEPSEXXXXXXXXXXXXXXXXXXXLPPEQEGPIRSLPKILIKVEEPLKAEDCVVAPHSRGEIGDASNDTLRAEKAVMKAVAEASTESLKNTIHPQMEALWDAVKWMEDRMEAIDAERRGELEDASRTAAHNTAKVEVARMERERIKLALEDRPVRSEFEALNDLHEGRLRTTETELRRLVSELSNRLQE 1008
            +GE PLHATSPTLAAAAAQQEPSE  XXXXXXXXXXXXXXXXX PPEQEG IRS PK+ IKVEEPLKAEDCVVA H RGEIGDASN+ LRAEKAVMKAVAEASTESLKNTIHPQ+EALWDAVKWMEDRMEAIDAERRGELEDASRTAA NTAKVEVA+MERERIKLALEDRPVRSEFEALNDLHEGRLRTTETELRRL++ELSNRLQE
Sbjct:    3 QGESPLHATSPTLAAAAAQQEPSEAKXXXXXXXXXXXXXXXXXXPPEQEGSIRSFPKVSIKVEEPLKAEDCVVAQHPRGEIGDASNEALRAEKAVMKAVAEASTESLKNTIHPQVEALWDAVKWMEDRMEAIDAERRGELEDASRTAAQNTAKVEVAKMERERIKLALEDRPVRSEFEALNDLHEGRLRTTETELRRLIAELSNRLQE 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13583.2837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS35_ECTSI8.850e-9991.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13583contigEcto-sp13_S_contig13583:1746..4325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1098
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002000.1
Cds size1098
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.0784528-CDS-Ecto-sp13_S_contig13583:1745..19221681462725.0784528-CDS-Ecto-sp13_S_contig13583:1745..1922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13583 1746..1922 +
1681462725.0925446-CDS-Ecto-sp13_S_contig13583:2446..26571681462725.0925446-CDS-Ecto-sp13_S_contig13583:2446..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13583 2447..2657 +
1681462725.104995-CDS-Ecto-sp13_S_contig13583:2994..34491681462725.104995-CDS-Ecto-sp13_S_contig13583:2994..3449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13583 2995..3449 +
1681462725.1176105-CDS-Ecto-sp13_S_contig13583:3751..39131681462725.1176105-CDS-Ecto-sp13_S_contig13583:3751..3913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13583 3752..3913 +
1681462725.1299562-CDS-Ecto-sp13_S_contig13583:4232..43251681462725.1299562-CDS-Ecto-sp13_S_contig13583:4232..4325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13583 4233..4325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13583.2837.1prot_Ecto-sp13_S_contig13583.2837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13583 1746..4325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13583.2837.1

>prot_Ecto-sp13_S_contig13583.2837.1 ID=prot_Ecto-sp13_S_contig13583.2837.1|Name=mRNA_Ecto-sp13_S_contig13583.2837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=366bp
MEEALPASAYSLQPIGLLPEIRIDTSRLDVLLSGFQRRLTALEVSFERVA
ESAAEAAHKVVKTFSPRNTAPPSPVRPTASSPRPPRSPSPASSELTATVV
LAGVTGGPPPSARKMDVQLEKSSLADSNEGEPPLHATSPTLAAAAAQQEP
SEAKRGPAEEQEGPQETEKEPLPPEQEGPIRSLPKILIKVEEPLKAEDCV
VAPHSRGEIGDASNDTLRAEKAVMKAVAEASTESLKNTIHPQMEALWDAV
KWMEDRMEAIDAERRGELEDASRTAAHNTAKVEVARMERERIKLALEDRP
VRSEFEALNDLHEGRLRTTETELRRLVSELSNRLQEELHGKIDKLYEDTS
DWKTRLDNSTKLVDER
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mRNA from alignment at Ecto-sp13_S_contig13583:1746..4325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13583.2837.1 ID=mRNA_Ecto-sp13_S_contig13583.2837.1|Name=mRNA_Ecto-sp13_S_contig13583.2837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13583:1746..4325+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGCTTTGCCCGCGTCGGCGTACTCTCTTCAACCGATCGGATT
GTTGCCGGAGATCCGTATCGACACCTCTCGACTCGATGTGCTGCTGTCAG
GTTTCCAAAGGAGACTGACTGCCCTGGAGGTGTCCTTTGAAAGGGTTGCT
GAGTCAGCTGCGGAGGCCGCTCACAAGGTTGGGCCTTGTTGCCACATTCC
TTTGGATGTGTTGCGAGACTCCTAGAGCATCTCATCGCAATACTAGTACC
TGAAGAAAACGTGCAATGGCAGCTTGCAAGCACAGGACAACGGCATAGAA
GAGTCACGCTTGTTTTACAATGAAGTTCACCTGTAACGCAGAAGTTGCTT
TGCTTCAAGTACAAGAGACGGAAGCATGGGTAAATGAACACGGTTGGAAA
AGGATTTTCTGTCTACAACAGTTGCCCGTACATGCACGTCATACATACGT
GTCCCTTGGATGCCGCACGTTACAACCACAAAATACAACCGCACCGGTAG
GGTCTTAGTCCGTCTGGAGTAGGTTCACATGACCTATTCTACCGGTCTAG
CGTACACTTTGAAGCAGGTTGCCTTGTTCGACAAACACGATCAATAGGCC
TCTGCGAAATCGATCTCTGATCCATTGAATATTGTAGTACTGCTTGTGTG
CATGCCGCCAACGCAAACCTCACATACTTATATGCCGTTTGACCTTGGCA
GGTGGTGAAGACCTTTTCCCCGAGAAACACCGCTCCTCCTTCTCCCGTAC
GGCCAACAGCGTCGTCTCCTAGACCTCCAAGATCGCCATCTCCAGCTTCG
TCCGAACTCACCGCCACTGTCGTACTAGCCGGGGTCACAGGAGGGCCGCC
ACCATCCGCACGGAAGATGGACGTTCAACTTGAGAAGTCCAGTCTAGCTG
ATTCTAACGAAGGTGCGGAAACTAGCATCGGTCAGCCAAAGGGGGTTAGC
ACAAGAGGCTCACCAAAACTACCCTACCCTGTGTTCAAGCATCGCCTGCC
CGTCTCAGCTTTGGCACATCCTTCACTGTGAAGCCAAGTGCCTGAGGTAC
TCATGACACCTACCAAGATTTGAACACCTCTCAATCACATTTTACAAGAA
TTCGTGGGCGCCGCTGCAGCATGTTCCACGTAAACGCTTCACCATCGCTT
CTGTGACTCATCCTTTCAGACCCCCCCACCAACCGCAATACTGCCAACCG
TTCTTCACCGAGCTTCAAATTCGCCATAAACCCGCCGCTACGCTGCAAGG
CGAACCTCCGCTCCACGCGACTAGTCCAACCCTAGCCGCCGCGGCTGCAC
AACAAGAACCTTCAGAAGCCAAGCGGGGACCCGCAGAAGAACAAGAAGGA
CCTCAAGAAACAGAAAAGGAACCTTTACCACCCGAGCAGGAAGGGCCAAT
CCGTTCCTTGCCAAAGATTTTGATAAAAGTCGAAGAGCCACTGAAAGCGG
AAGACTGCGTAGTAGCTCCACATTCGAGGGGGGAAATTGGGGACGCATCA
AACGACACTTTGAGAGCAGAAAAGGCTGTGATGAAGGCTGTAGCCGAAGC
ATCGACAGAGTCTTTGAAAAACACGATACACCCCCAAATGGAAGCGTTAT
GGGATGCGGTAAAGTGGATGGAAGACCGTATGGAGGCGATCGATGCGGAG
AGAAGAGGGGAGCTAGAGGACGCCTCTCGTACTGCGGCTCATAACACCGC
AAAGGTAAAAGATCCCCACGAAATGACGTGTCCCGTCTTCATTAGTTGGA
TGTTCGAGTCCTTCACGGTCCCGCTCGAGGCAACTTTCTCGCCCGTGCTG
CCGACAAAGCAACATATTCTACTTCATTCTCTTGCGAACGGACTCATGCT
ATGTACTGTTGACCATCAGCGAAAATCGATTAACGTGGTCGACCTCTCAG
CCAGCTGCTTGGCAAAAGCGGCCGTGAGAACACATACAACAAGATGTGAC
AAAGCCACTTGCCACTACCACCCTTACCGCCACGTCTATCATGGAACCTT
GGAAAGGTGGAGGTCGCCAGGATGGAGCGAGAGCGAATCAAGCTTGCCCT
GGAGGATAGACCTGTCAGGTCGGAGTTTGAAGCTCTCAATGATCTGCACG
AGGGCCGGCTACGGACGACGGAGACCGAGCTTCGTCGCCTAGTGTCAGAG
TTGTCAAATCGTTTGCAGGTACACTTGGCGGCTTCGGACTGTTCCACTAT
TCCACACTTACCCAGCGAGGAGAGGGGAGGGGGGGGGCAGCCCGAAGACA
TATCTCCCGCAAGGAGAACATAGTCGGCCAAGAGCGCGCCGAAGTATTTG
GAGACGAAAATTGCCCGAAGAACAGTTTTCTGGAACTCTCTCATGACTGC
TCGGATCCCCACCGTGTACGCGGCAACTGCGTCGTAAAGTAACAACAACG
CATTGGCCCACCATGCAGGCTGTGAGAATATCGTCTCACGCCGAACGTCT
CGTGTTGCTGTTTTGTACTCGGACCACTGGTGCCCAGGAAGAGCTTCACG
GAAAAATAGATAAGCTGTATGAAGACACTTCTGACTGGAAAACGCGACTG
GACAATTCCACAAAGCTCGTAGATGAAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13583:1746..4325+

>mRNA_Ecto-sp13_S_contig13583.2837.1 ID=mRNA_Ecto-sp13_S_contig13583.2837.1|Name=mRNA_Ecto-sp13_S_contig13583.2837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13583:1746..4325+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGCTTTGCCCGCGTCGGCGTACTCTCTTCAACCGATCGGATT
GTTGCCGGAGATCCGTATCGACACCTCTCGACTCGATGTGCTGCTGTCAG
GTTTCCAAAGGAGACTGACTGCCCTGGAGGTGTCCTTTGAAAGGGTTGCT
GAGTCAGCTGCGGAGGCCGCTCACAAGGTGGTGAAGACCTTTTCCCCGAG
AAACACCGCTCCTCCTTCTCCCGTACGGCCAACAGCGTCGTCTCCTAGAC
CTCCAAGATCGCCATCTCCAGCTTCGTCCGAACTCACCGCCACTGTCGTA
CTAGCCGGGGTCACAGGAGGGCCGCCACCATCCGCACGGAAGATGGACGT
TCAACTTGAGAAGTCCAGTCTAGCTGATTCTAACGAAGGCGAACCTCCGC
TCCACGCGACTAGTCCAACCCTAGCCGCCGCGGCTGCACAACAAGAACCT
TCAGAAGCCAAGCGGGGACCCGCAGAAGAACAAGAAGGACCTCAAGAAAC
AGAAAAGGAACCTTTACCACCCGAGCAGGAAGGGCCAATCCGTTCCTTGC
CAAAGATTTTGATAAAAGTCGAAGAGCCACTGAAAGCGGAAGACTGCGTA
GTAGCTCCACATTCGAGGGGGGAAATTGGGGACGCATCAAACGACACTTT
GAGAGCAGAAAAGGCTGTGATGAAGGCTGTAGCCGAAGCATCGACAGAGT
CTTTGAAAAACACGATACACCCCCAAATGGAAGCGTTATGGGATGCGGTA
AAGTGGATGGAAGACCGTATGGAGGCGATCGATGCGGAGAGAAGAGGGGA
GCTAGAGGACGCCTCTCGTACTGCGGCTCATAACACCGCAAAGGTGGAGG
TCGCCAGGATGGAGCGAGAGCGAATCAAGCTTGCCCTGGAGGATAGACCT
GTCAGGTCGGAGTTTGAAGCTCTCAATGATCTGCACGAGGGCCGGCTACG
GACGACGGAGACCGAGCTTCGTCGCCTAGTGTCAGAGTTGTCAAATCGTT
TGCAGGAAGAGCTTCACGGAAAAATAGATAAGCTGTATGAAGACACTTCT
GACTGGAAAACGCGACTGGACAATTCCACAAAGCTCGTAGATGAAAGG
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