prot_Ecto-sp13_S_contig13582.2836.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13582.2836.1
Unique Nameprot_Ecto-sp13_S_contig13582.2836.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length39
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.990e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:    1 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 38
            LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS
Sbjct:  407 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 444
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BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC)

HSP 1 Score: 46.2 bits (108), Expect = 2.500e-5
Identity = 17/38 (44.74%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:    1 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 38
            ++ ++PA+ +P  PA R AALF +KP+W + +LEPY++
Sbjct:   22 MLRHLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRY8_9PHAE3.990e-16100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0Z8H1_COCSC2.500e-544.74Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019128Sister chromatid cohesion protein Dcc1PFAMPF09724Dcc1coord: 2..37
e-value: 2.2E-12
score: 47.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13582contigEcto-sp13_S_contig13582:194..310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13582.2836.1mRNA_Ecto-sp13_S_contig13582.2836.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13582 194..310 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13582.2836.1 ID=prot_Ecto-sp13_S_contig13582.2836.1|Name=mRNA_Ecto-sp13_S_contig13582.2836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019128Dcc1