mRNA_Ecto-sp13_S_contig1357.2832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 493 bits (1270), Expect = 6.970e-175 Identity = 255/287 (88.85%), Postives = 262/287 (91.29%), Query Frame = 1
Query: 1 RNDMRVTPEGEKGRGGCAQTPPKDKTHAAAARAAGRASAVEAAEPSAEAPIIPSNTPSSVVAQPDPPDRSRCLDALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNGGASRVPAFRPRGVTWNLPIAALRGEDDVFADVRVLVLGHGLGRVGVHFNRWVDGLQLPPALQDLTFGQWYDRPIHKPRVSSDDRPHRVARLFEAAHNRPSRRHSAPDMARRRRASHVAALVDTAKPSRLKSEVILLVTGLGTASGKHQVQCRHSL 861
R+DM VTPE EK RGGCAQTPPKD T AAA RA GRASAVEA EPSAEAPIIPSN PSSV++Q DPPDRSRCLDALIVALTNAGD QGWYTPTTQLQLASLDFCTACRAVPT H+TVDGDVP+ L+AGIDNGGASRVPAFRPR VTWN PIAALRGEDDVFADVRVLVLGHGLGRVGV FNRWVDGLQLPPALQDLTFGQWYDRPIHKPR+SSDDRPHRVARL EAAHNRPSRRHSAPDMARRRRASHVAALVDTAKPSRLK IL VTGLG A GKHQ QCR SL
Sbjct: 14 RSDMSVTPEREKRRGGCAQTPPKDVTQAAAVRAPGRASAVEAVEPSAEAPIIPSNAPSSVMSQRDPPDRSRCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARLKAGIDNGGASRVPAFRPRCVTWNKPIAALRGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQDLTFGQWYDRPIHKPRLSSDDRPHRVARLSEAAHNRPSRRHSAPDMARRRRASHVAALVDTAKPSRLKGGDILFVTGLGAALGKHQ-QCRCSL 299
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.130e-22 Identity = 67/177 (37.85%), Postives = 90/177 (50.85%), Query Frame = 1
Query: 169 PSSVVAQPDPPDRSRCLDALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNGGA-------SRVPAFRPRGVTWNLPIAA-LRGEDDVFADVRVLVLGHGLG-------------RVGVH----FNRWVDGLQLPPALQDLTFGQWYDRPIHK 624
PS+++ P R CL+ALIVAL D + WYT T +LQLASLDFC ACR T H+ VD +P L A D +RVP R R VTWN+P AA LR D+ L G G + H F++ ++ +Q PP LQ++TFG +++PI +
Sbjct: 36 PSTILRVQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIER 212
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 6.190e-20 Identity = 58/132 (43.94%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 220 DALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCL---------EAGIDNGGASRVPAFRPRGVTWNLPIAALRGEDDVFADVRVLVLGHGLGRVGVHFNRWVDGLQLPPALQDL 588
DAL +AL GWYT QLQLASL C ACR VPT+H+TV+ DV + L + + + G SRVPA RPR VTWNL ++R D F V VLV G F+ VD + PP L+ L
Sbjct: 17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVDVLVFGDS-------FDYRVDRVTWPPGLKKL 141
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.080e-15 Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 1
Query: 211 RCLDALIVALTNA--GDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCL----EAGIDNGGASRVPAFRPRGVTWNLPIAALRGE--DDVFADVRVLVLGHGLGRVGVHFNRWVDGLQL-----------------PPALQDLTFGQWYDR 612
RCLDA +VAL+ G E+ WYT T QLQLASL+FC ACR+ P HV VD + P L +A G ++RVPA + G+TW P + G +++ + L L L + W GLQ P +L+ LTF +D+
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.310e-15 Identity = 55/150 (36.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query: 229 IVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGI--------------DNGGAS---RVPAFRPRGVTWNLPIAAL-RGEDDVFADVRVLVLGHGLGRVGVHFNRWVDGLQLPPALQDLTFGQWYDRPIHK 624
+VAL + WY T QLQLAS++FC ACR+V T H+TV+ P L A G S RVP FRPR VTWNLP + L D F ++ + + R G F DG+ LP L+ + FG+W + + K
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSF----DGVALPRGLKSVVFGRWCYQHVDK 146
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 7.430e-15 Identity = 53/140 (37.86%), Postives = 68/140 (48.57%), Query Frame = 1
Query: 199 PDRSRCLDALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNG-------GASRVPAFRPRGVTWNLPIAA-LRGEDDVFADVRVLVLGHGLGRVGVHFNRWVDGLQLPPALQDLTF 594
P + CL+A+ VAL D + WYT T +LQLASL+FC ACRA T H+ VD +P L A D RVP R R VTWN+P AA LR D+ L G F ++ + P L+ + F
Sbjct: 31 PTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSA-------FEGSLEAVTWPRRLESIAF 163
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 3.060e-13 Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 199 PDRSRCLDALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNGGA-------SRVPAFRPRGVTWNLPIAA 459
P RS CL+AL++AL + + WYT T +LQLASL+FC ACR T H+ VD +P L A D +RVP R R VTW + AA
Sbjct: 108 PSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAA 201
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.480e-13 Identity = 55/146 (37.67%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 208 SRCLDALIVALTNAG-DEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNG------------GASRVPAFRPRGVTWNLPIAA-LRGEDDVFADVRVLVLGHGLGRVGVHFNRWVDGLQLPPALQDLTFGQW 603
SRCL+A VAL D + WY TTQLQLASL FC ACR T +TVD +P L A + G SRVP F R VTW+ L A+V +L G FNR + + P L+ L FG +
Sbjct: 28 SRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDGG-------FNRAIGAVAWPRKLRRLEFGDY 166
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.950e-12 Identity = 42/94 (44.68%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 199 PDRSRCLDALIVALTNAGDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCLEAGIDNGG-------ASRVPAFRPRGVTWNLPIAA 459
P R CL+A+IVAL D + WYT T + QLASL+FC ACR T + VD P L A D +RVP R R VTW++P AA
Sbjct: 7 PARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAA 100
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.050e-11 Identity = 45/103 (43.69%), Postives = 52/103 (50.49%), Query Frame = 1
Query: 205 RSRCLDALIVALTNA--GDEQGWYTPTTQLQLASLDFCTACRAVPTAHVTVDGDVPSCL---------------EAGIDNGGASRVPAFRPRGVTWNLPIAAL 462
RS CL A IVAL G E+ WY T +LQL SL+FC ACR VPT HV VD P L EA + N RVPA + G+TW L + L
Sbjct: 14 RSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSN----RVPAVQASGLTWALDMEVL 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1357.2832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1357.2832.1 >prot_Ecto-sp13_S_contig1357.2832.1 ID=prot_Ecto-sp13_S_contig1357.2832.1|Name=mRNA_Ecto-sp13_S_contig1357.2832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp MRVTPEGEKGRGGCAQTPPKDKTHAAAARAAGRASAVEAAEPSAEAPIIPback to top mRNA from alignment at Ecto-sp13_S_contig1357:3954..6543+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1357.2832.1 ID=mRNA_Ecto-sp13_S_contig1357.2832.1|Name=mRNA_Ecto-sp13_S_contig1357.2832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1357:3954..6543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1357:3954..6543+ >mRNA_Ecto-sp13_S_contig1357.2832.1 ID=mRNA_Ecto-sp13_S_contig1357.2832.1|Name=mRNA_Ecto-sp13_S_contig1357.2832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1357:3954..6543+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |