prot_Ecto-sp13_S_contig13560.2826.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13560.2826.1
Unique Nameprot_Ecto-sp13_S_contig13560.2826.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length89
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13560.2826.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-6
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 0 
Query:   19 LGPTFSRAQELSFEPRADAFVRNADNYLCDEYWTSWPAVQERAIADGTVMVWHMGTSVGNLMRTL 83
            LG +   A +   E   D FV    +  C   WTSWPAVQE AIA+GTV+V+ +  SVGNL  TL
Sbjct:  167 LGSSVDVALQEETEKGNDRFVHTTGDD-CHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITL 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13560.2826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE2.930e-647.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..89
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.842

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13560contigEcto-sp13_S_contig13560:380..646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13560.2826.1mRNA_Ecto-sp13_S_contig13560.2826.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13560 380..646 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13560.2826.1 ID=prot_Ecto-sp13_S_contig13560.2826.1|Name=mRNA_Ecto-sp13_S_contig13560.2826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MRTMGPLGSSLLLVAWMMLGPTFSRAQELSFEPRADAFVRNADNYLCDEY
WTSWPAVQERAIADGTVMVWHMGTSVGNLMRTLMYILPV
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