mRNA_Ecto-sp13_S_contig13526.2803.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13526.2803.1
Unique NamemRNA_Ecto-sp13_S_contig13526.2803.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13526.2803.1 vs. uniprot
Match: D8LNW8_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW8_ECTSI)

HSP 1 Score: 733 bits (1891), Expect = 1.850e-262
Identity = 362/422 (85.78%), Postives = 386/422 (91.47%), Query Frame = 1 
Query:    1 SEKNCAIQNCKLSAWQARLILGCTATPCNICQPVKDFINKSKMDYIKKGILNEHRPETAPVTEGPSPTGGSSFDANMDDLTSRLGSMSVLLQGSSQHDETTKLMEAMAAISIDSDTRQQRRPPAIGLQGPGAAFQVMGASVARDASNIFRIGIKNDDGSPKRKGTRFSSRLRDLKCNARAGQAVAETGDSARKRQYKNKSPVWRVERRDRNARFMEKHRYGYVFDTARWGGDMDDGAGESRTDRDDLGDGGDGAGPTTEDGGHDEAATRGGSATNATGTEHDENPCTSWDECMGGEETGPGPQRERGHRATADQTALNANIAGKNISVEGDQRKFLILLFHLHTCRSDGDGETCQVTKHCPALRRTWRHMKTCDTTVCPVAEAICTSLSSLVHHLYHCDKACRLCDYVRYVSCGDQHVGDDT 1266
            SEK+CA+QNCKLSAWQ   +  CTATPCNICQPVKDFI KS+ D I KGILNEHRPE+AP+T GPSPTGGSS DA+MDDLTSRLGSMSVLLQGSSQ DETTKL+EAMAAISIDS+TRQQRRPPAIGL+GPGAAFQVMGASVARDAS+IFRIG K+DDGSPKR GTRFSSRLRD KC ARAGQAVAETGDSARKRQ KNKSPVWRVERRD+NARFMEKHRYGYV D ARWGGD++DGAG+SRTD DDLGDGGDG GP T+DGG+DEAATRGGSATNATGTEHDENPCT WD+CM GEETG G +  RG R TADQTALNANI GKN SVEGDQRKFLILL+HLHTCR+DGDGE CQVTKHCPA+RRTWRHMKTCD TVCP+AEAICTSLSSLVHHLYHCDKACRLCDYVRYV CGDQHVGD T
Sbjct:  171 SEKDCAVQNCKLSAWQLSHLKRCTATPCNICQPVKDFIKKSRTDCIDKGILNEHRPESAPITAGPSPTGGSSVDADMDDLTSRLGSMSVLLQGSSQDDETTKLLEAMAAISIDSNTRQQRRPPAIGLRGPGAAFQVMGASVARDASSIFRIGSKDDDGSPKRMGTRFSSRLRDFKCKARAGQAVAETGDSARKRQNKNKSPVWRVERRDKNARFMEKHRYGYVCDAARWGGDIEDGAGQSRTDSDDLGDGGDGEGPMTDDGGNDEAATRGGSATNATGTEHDENPCTIWDDCMEGEETGLGARGGRGRRVTADQTALNANIVGKNNSVEGDQRKFLILLYHLHTCRADGDGEMCQVTKHCPAMRRTWRHMKTCDATVCPIAEAICTSLSSLVHHLYHCDKACRLCDYVRYVGCGDQHVGDHT 592
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BLAST of mRNA_Ecto-sp13_S_contig13526.2803.1 vs. uniprot
Match: A0A6H5JVR0_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR0_9PHAE)

HSP 1 Score: 592 bits (1527), Expect = 8.900e-211
Identity = 306/367 (83.38%), Postives = 312/367 (85.01%), Query Frame = 1 
Query:  166 PETAPVTEGPSPTGGSSFDANMDDLTSRLGSMSVLLQGSSQHDETTKLMEAMAAISIDSDTRQQRRPPAIGLQGPGAAFQVMGASVARDASNIFRIGIKNDDGSPKRKGTRFSSRLRDLKCNARAGQAVAETGDSARKRQYKNKSPVWRVERRDRNARFMEKHRYGYVFDTARWGGDMDDGAGESRTDRDDLGDGGDGAGPTTEDGGHDEAATRGGSATNATGTEHDENPCTSWDECMGGEETGPGPQRERGHRATADQTALNANIAGKNISVEGDQRKFLILLFHLHTCRSDGDGETCQVTKHCPALRRTWRHMKTCDTTVCPVAEAICTSLSSLVHHLYHCDKACRLCDYVRYVSCGDQHVGDDT 1266
            P   PVTEGPSPTGGSSFDANMDDLTSRLGSMSVLLQGSSQ DETTKLMEAMAAISIDSDT QQRRPPAIGL+GPGAAFQVMG  VARDASN FRIGIKN+DGSPKRKGTRFSSRLRDLKC AR GQ VAETGDSARKRQ KNKSPVWRVERRDRNARFM KHRYGYVFDTARWGGDMDDGA                             ATRGGSATNATGTEHDE+PCT WDECMGGEET PGPQ   G RA ADQTALNANI GKNISVEGDQRKFLILL+HLHTCR+DGDGETCQVTKHCPALR TWRHMKTC+ TVCPVAEAICT LSSLVHHLYHCDKACRLCD V YVSCGDQHVGDDT
Sbjct:   24 PILPPVTEGPSPTGGSSFDANMDDLTSRLGSMSVLLQGSSQDDETTKLMEAMAAISIDSDTWQQRRPPAIGLRGPGAAFQVMGDPVARDASNTFRIGIKNNDGSPKRKGTRFSSRLRDLKCKARDGQPVAETGDSARKRQNKNKSPVWRVERRDRNARFMGKHRYGYVFDTARWGGDMDDGA-----------------------------ATRGGSATNATGTEHDESPCTIWDECMGGEETEPGPQ---GGRAAADQTALNANIVGKNISVEGDQRKFLILLYHLHTCRADGDGETCQVTKHCPALRWTWRHMKTCEATVCPVAEAICTRLSSLVHHLYHCDKACRLCDCVGYVSCGDQHVGDDT 358
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13526.2803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNW8_ECTSI1.850e-26285.78Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JVR0_9PHAE8.900e-21183.38TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13526contigEcto-sp13_S_contig13526:1182..4698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1269
Hectar predicted targeting categoryother localisation
Exons4
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462722.4368079-CDS-Ecto-sp13_S_contig13526:1181..13071681462722.4368079-CDS-Ecto-sp13_S_contig13526:1181..1307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13526 1182..1307 -
1681462722.4518907-CDS-Ecto-sp13_S_contig13526:1494..24661681462722.4518907-CDS-Ecto-sp13_S_contig13526:1494..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13526 1495..2466 -
1681462722.461303-CDS-Ecto-sp13_S_contig13526:3065..31711681462722.461303-CDS-Ecto-sp13_S_contig13526:3065..3171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13526 3066..3171 -
1681462722.4694881-CDS-Ecto-sp13_S_contig13526:4633..46981681462722.4694881-CDS-Ecto-sp13_S_contig13526:4633..4698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13526 4634..4698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13526.2803.1prot_Ecto-sp13_S_contig13526.2803.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13526 1182..4698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13526.2803.1

>prot_Ecto-sp13_S_contig13526.2803.1 ID=prot_Ecto-sp13_S_contig13526.2803.1|Name=mRNA_Ecto-sp13_S_contig13526.2803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=423bp
SEKNCAIQNCKLSAWQARLILGCTATPCNICQPVKDFINKSKMDYIKKGI
LNEHRPETAPVTEGPSPTGGSSFDANMDDLTSRLGSMSVLLQGSSQHDET
TKLMEAMAAISIDSDTRQQRRPPAIGLQGPGAAFQVMGASVARDASNIFR
IGIKNDDGSPKRKGTRFSSRLRDLKCNARAGQAVAETGDSARKRQYKNKS
PVWRVERRDRNARFMEKHRYGYVFDTARWGGDMDDGAGESRTDRDDLGDG
GDGAGPTTEDGGHDEAATRGGSATNATGTEHDENPCTSWDECMGGEETGP
GPQRERGHRATADQTALNANIAGKNISVEGDQRKFLILLFHLHTCRSDGD
GETCQVTKHCPALRRTWRHMKTCDTTVCPVAEAICTSLSSLVHHLYHCDK
ACRLCDYVRYVSCGDQHVGDDT*
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mRNA from alignment at Ecto-sp13_S_contig13526:1182..4698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13526.2803.1 ID=mRNA_Ecto-sp13_S_contig13526.2803.1|Name=mRNA_Ecto-sp13_S_contig13526.2803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13526:1182..4698- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGAGAAGAACTGTGCGATTCAGAACTGCAAACTCTCTGCGTGGCAGGC
AAGATTAATTCTGGGGTGGGCGCATTCGCTACACATTGCTGACCGATGAT
GTGATATCGTTTGCGTTCTGCTAAAAGAATGCGACAGATTCGTGTGTGCA
AGAGCAGCGTTCCGTTGGAACTCGATCTGACAGGCGATTCATTTCACATG
GGAGCACATCCTGCTTTTGGATTCCTCGCGTTCGGTTCTATCCTCGTGCA
TGCAGCTTCTGATCATCTTTCCTTGCCAAGGCAGCTTTTGCTTGCCCTCT
GGTGCGCCCTGTGACAGCACTTGCTCCCTCAGCAGCCGCGCGTAGACACG
CTCACTTTATGCTGCGGCCAATGAAACAAGGCCCACGCTCAAGAAATGAA
AAATTATCCTCGAACTGGTCCACAATCAAAACACAACGTAGTTGACCAAA
ATAATGAATTCTTCATTCAGTGGTTGCGCGGAGCGCCGACCATGTATTCC
CTTTTTTGTAATTTCACTACTGTATGTAGTCTGATGGGCTATAGCTAGAA
TTACCTGCAGAAAATATGGTCAAAATACACACAACACTCACTCCGTTTGG
TGGCCATCGTTCGAGCGTGTTCTTATTTCCTTCCGCCGGACCCGACCTTT
CTTTTGCACTAACCCGAGTTAGGCGGGCGTTGGTTCGAAACGATAAAGTA
CTCACACATACTGTCGTAATAGTATTGCACAACTAACTTGTCCCAGACCC
CCGTTTCTTGAAGACATATATTTGTAGCGCATACATCGGATATACAATTT
TAGGCCCAACTTTTCTCATTGTGAGGGTCGCTCAACTGAAGAACCCGCCC
ATCATATTAAAACATAGTTTTGTTGGATGTTGACAGTTTCACCGTTGACC
TGCCGAGCCAATGGGGATACTTGTCTTGCAAACTTCATTTTCATGAACCC
CTCTATTTCGCTGATAGATAGATTTACGTTTTTTGGAATCTCAGAGACAC
ATGGAGAACCGCAGCAGTCATTGGTGGAACGAGTGAGTCTGGAAATCGAA
TCGGGCTGAAATCGTGCCACGTGCAACACGTTTGATCTGACTCATCCAAA
TTCAGGGCTGAGAGAGCAACAACCAACCATAGTCGTAGCTTCTTGCAAAC
TAAGACTTACAAAATCCACGTGCTTGTTTGTACTCATGTAGATACCATTC
CAAATGTCCAGGTGGCCATCGTGCGCGTGATGTATTCGCCAGCCATGCCT
CTGGGTGCAAGAGACAGCTTGCACTAGAGCTATTTCAGATGCAGTAGGAA
CGTTGAGCTTTACCAAGTTGCGACATTTGCAGTACGTTTGCCCACCGACA
CTATCGATTGGGGCATCGGGCAGCAAAGCTATGAAATAGCTGTGGTTGCT
GGAGCTCACCTATGTTGGTAGGGTATACCAATAGCTGGTACATTCATTGC
AGTCGAGACCCCCATCTGTGCCCATTCTCCTTCGCCCCGCATTACCCCGA
CCACGAGCAGCTATCTCACCTGAAAAGATGCACGGCAACCCCCTGCAACA
TCTGCCAGCCAGTGAAAGATTTCATCAACAAGTCGAAAATGGACTACATA
AAAAAGGGGATCCTGAATGAGCACCGACCTGAGGTAAGAATGGAAGGCTC
GGCGCACCCATGGGGGGGGCGTTCATTCTTATTCTTTGTGTGTCACGAGC
TGCTGTACGCCTTGTCAGAATCGATCCCCTTTCACACCCACGAGCGGCAA
AACAGTCGTTGTCATTTCGACATGAAGCGCCTCGAATCCCGTCGGAGGTA
CAATGAATCGATGTGACCGTGTAACGTTGTTTGGAACGTCAACCTTTCTT
GCCTAGCTAGGTGAAGTTGGCGGGCATCCTTCCGTATGAGTTGGGCATCA
CATTTCCTGCCCGAAACCATTGGGCGACGTTTAGTTTCGCTTTCAGGCCG
GAATGAGATCCGTGGCGTGGACCAATAGGAACGCCGCGCGTATGCTGACA
TTTCCGAAGATGTCACGTTGGCGGTACGAAAGAAGGTACAGTAGATTGGA
GCATCATTCGTATCGAGATCCAACTCTCTGTGTACTCTACTGTAGGGGGA
GAAGGGCGTGCTGTCCCCTCATGTTCAGTTGTTGAAGGCTTAAAGGCTGC
AAGCACGTGAATCGTTCTACGAAGTGCAGACGCATTCATTCTCCGTGTTT
GCTTCCTTCCGCGCTTCAATACTAACGAGAAGACGGCTCCAGTAACGGAA
GGCCCAAGTCCAACAGGTGGCTCATCGTTTGACGCAAACATGGACGATCT
CACGTCGCGCCTGGGCAGCATGTCGGTCCTACTGCAAGGATCTTCGCAAC
ACGACGAGACAACCAAGCTGATGGAGGCCATGGCTGCGATCTCGATAGAC
TCGGACACCCGGCAGCAGCGCCGCCCTCCGGCAATAGGACTCCAAGGACC
CGGAGCTGCTTTCCAGGTGATGGGAGCTTCGGTAGCCAGGGACGCAAGCA
ACATCTTCAGGATCGGGATCAAGAATGACGACGGGTCGCCAAAGCGTAAG
GGAACGCGGTTCAGCTCTCGCCTCCGCGACCTCAAGTGTAACGCCCGCGC
TGGCCAGGCTGTGGCCGAAACGGGCGATAGTGCGAGAAAGCGCCAATACA
AGAACAAATCCCCCGTGTGGCGTGTCGAGCGCCGGGACAGAAACGCAAGG
TTTATGGAGAAACACCGTTACGGCTACGTGTTTGACACTGCGCGCTGGGG
TGGTGACATGGATGATGGCGCTGGTGAGAGCAGGACCGACCGCGATGATC
TTGGCGATGGCGGCGACGGGGCGGGGCCAACAACGGAAGACGGCGGTCAC
GATGAAGCGGCGACTCGTGGTGGATCAGCTACTAACGCGACAGGCACCGA
ACACGACGAAAATCCTTGCACAAGTTGGGACGAGTGCATGGGGGGCGAAG
AAACTGGACCTGGGCCGCAGAGGGAACGCGGCCACCGTGCCACCGCTGAC
CAAACGGCGCTGAATGCCAACATTGCAGGGAAAAATATCTCGGTTGAGGG
CGACCAGAGAAAATTTCTGATCCTCCTGTTTCACTTGCACACGTGCCGTT
CCGACGGAGACGGCGAAACGTGTCAAGTTACCAAGCATTGCCCAGCCCTG
AGGCGGACGTGGCGCCATATGAAGACATGCGACACAACCGTTTGCCCCGT
CGCGGTACGTCGCAGCGTTCCCGATGAAGGGAACAGAAGTTTCATAGGTT
TAATAGTTTAGACGGCCTTCCTTGTGTTTGCTCTGATCCGGTCCTCGAGA
TGCATCTTGTGCGTCTATGTACATGCAACTCAACGGTCATGTTGTGCTCA
AGCCGCGTTTACATGTTGCATTCTCGACTCTCACTCGACAGGAAGCCATT
TGCACCAGCTTAAGCAGCCTCGTGCATCACCTCTACCACTGCGACAAGGC
CTGCAGGCTATGCGACTACGTGAGGTACGTGAGTTGCGGCGATCAACACG
TTGGCGATGACACTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13526:1182..4698-

>mRNA_Ecto-sp13_S_contig13526.2803.1 ID=mRNA_Ecto-sp13_S_contig13526.2803.1|Name=mRNA_Ecto-sp13_S_contig13526.2803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13526:1182..4698- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGAGAAGAACTGTGCGATTCAGAACTGCAAACTCTCTGCGTGGCAGGC
AAGATTAATTCTGGGATGCACGGCAACCCCCTGCAACATCTGCCAGCCAG
TGAAAGATTTCATCAACAAGTCGAAAATGGACTACATAAAAAAGGGGATC
CTGAATGAGCACCGACCTGAGACGGCTCCAGTAACGGAAGGCCCAAGTCC
AACAGGTGGCTCATCGTTTGACGCAAACATGGACGATCTCACGTCGCGCC
TGGGCAGCATGTCGGTCCTACTGCAAGGATCTTCGCAACACGACGAGACA
ACCAAGCTGATGGAGGCCATGGCTGCGATCTCGATAGACTCGGACACCCG
GCAGCAGCGCCGCCCTCCGGCAATAGGACTCCAAGGACCCGGAGCTGCTT
TCCAGGTGATGGGAGCTTCGGTAGCCAGGGACGCAAGCAACATCTTCAGG
ATCGGGATCAAGAATGACGACGGGTCGCCAAAGCGTAAGGGAACGCGGTT
CAGCTCTCGCCTCCGCGACCTCAAGTGTAACGCCCGCGCTGGCCAGGCTG
TGGCCGAAACGGGCGATAGTGCGAGAAAGCGCCAATACAAGAACAAATCC
CCCGTGTGGCGTGTCGAGCGCCGGGACAGAAACGCAAGGTTTATGGAGAA
ACACCGTTACGGCTACGTGTTTGACACTGCGCGCTGGGGTGGTGACATGG
ATGATGGCGCTGGTGAGAGCAGGACCGACCGCGATGATCTTGGCGATGGC
GGCGACGGGGCGGGGCCAACAACGGAAGACGGCGGTCACGATGAAGCGGC
GACTCGTGGTGGATCAGCTACTAACGCGACAGGCACCGAACACGACGAAA
ATCCTTGCACAAGTTGGGACGAGTGCATGGGGGGCGAAGAAACTGGACCT
GGGCCGCAGAGGGAACGCGGCCACCGTGCCACCGCTGACCAAACGGCGCT
GAATGCCAACATTGCAGGGAAAAATATCTCGGTTGAGGGCGACCAGAGAA
AATTTCTGATCCTCCTGTTTCACTTGCACACGTGCCGTTCCGACGGAGAC
GGCGAAACGTGTCAAGTTACCAAGCATTGCCCAGCCCTGAGGCGGACGTG
GCGCCATATGAAGACATGCGACACAACCGTTTGCCCCGTCGCGGAAGCCA
TTTGCACCAGCTTAAGCAGCCTCGTGCATCACCTCTACCACTGCGACAAG
GCCTGCAGGCTATGCGACTACGTGAGGTACGTGAGTTGCGGCGATCAACA
CGTTGGCGATGACACTTAG
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