mRNA_Ecto-sp13_S_contig13522.2802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13522.2802.1
Unique NamemRNA_Ecto-sp13_S_contig13522.2802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13522.2802.1 vs. uniprot
Match: A0A6H5K1E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.510e-31
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MKIATMMVALVAAVASLAAVGNAFVMPPAGVAGRNAGQQALAPATSQPAPSRSSGASAVGALNVKIVLGEEE 216
            MK+ATMMVALVAA+ASLAA GNAFVMPPAGVAGRNAG+QALAPA SQPAPSRSSGASAVGALNVKIVLGEEE
Sbjct:    1 MKLATMMVALVAAIASLAAGGNAFVMPPAGVAGRNAGRQALAPAPSQPAPSRSSGASAVGALNVKIVLGEEE 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13522.2802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1E2_9PHAE1.510e-3193.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13522contigEcto-sp13_S_contig13522:1122..4505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004290.1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462722.3816273-CDS-Ecto-sp13_S_contig13522:1121..11801681462722.3816273-CDS-Ecto-sp13_S_contig13522:1121..1180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13522 1122..1180 -
1681462722.3985136-CDS-Ecto-sp13_S_contig13522:4342..45051681462722.3985136-CDS-Ecto-sp13_S_contig13522:4342..4505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13522 4343..4505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13522.2802.1prot_Ecto-sp13_S_contig13522.2802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13522 1122..4505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13522.2802.1

>prot_Ecto-sp13_S_contig13522.2802.1 ID=prot_Ecto-sp13_S_contig13522.2802.1|Name=mRNA_Ecto-sp13_S_contig13522.2802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MKIATMMVALVAAVASLAAVGNAFVMPPAGVAGRNAGQQALAPATSQPAP
SRSSGASAVGALNVKIVLGEEEK*
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mRNA from alignment at Ecto-sp13_S_contig13522:1122..4505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13522.2802.1 ID=mRNA_Ecto-sp13_S_contig13522.2802.1|Name=mRNA_Ecto-sp13_S_contig13522.2802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13522:1122..4505- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCGCAACGATGATGGTCGCGCTTGTGGCCGCGGTCGCCTCCCT
GGCGGCCGTCGGAAACGCGTTCGTCATGCCCCCCGCAGGCGTCGCGGGGC
GTAACGCCGGCCAGCAGGCGCTGGCACCCGCCACCTCGCAACCCGCTCCG
TCGCGCTCATCAGGTAAGGGAGAGACAAGGGAGGGTAGACGAACAGGAGT
ACCACGGATGAAGTCACTGCTGTCGTGATGGAACTGGGGCGGCGCTCTGC
TGCTGCCGCTGCTGTTGTTCCGTTGTCTGCTTTTTGAGGGAGTGGTACTG
GCTGACGCAATATTTTTGTTGTGATGATGTGAGGCCTTCATGACGCCAAA
CGCGCACTTACATGCGTGCCCTAAGACGCGTGCCTTTAGGACGGCGCCAG
AAACGACGCGCAGTAAAACATGTTGGCGTTGCCTGTACCTAGAGTGTTTA
TCGTCCCGGACGTTTCACCCTTGACTGTTCGTATTTCTTACGCCTCTACT
TGTTTGCCTCTCCTGCGTGTTGAACATGACCCCTTCTCTATTTCTAAGTG
AGTCACTCATGTCAACATATCAACCTTGAGCAGTGCCTGTGCGATGCGGG
TGCTATGCACTTCGTGCCTCGTGTTCTCTGCTGTGGGCACATACCGAAAT
GTAGCCGGATCCATGTGCCAATTGCGTCAGTTTTTCATTGCTGTCGTGTG
CGTAGCATCCCGTCGTCGACATGCGAGCAGCGGTTTTCGAGCAATGCGAC
CCTCAAACTTGCCGCTGCTGTTCACGACGTGGCCGTAACCGCACGTTGTA
CCTACGGTCCATGCACAACAATTTATCCAGTCGCGTTTTCAGGCACATTG
TTACATTTGAAAGGAAACCAGTCGGCCACATTCCAGCCATTCTTTTGATC
CCCACACCAAGGCGAGCACAAAAGGTTGCAGGGAAAAAAACAGTTGACCT
CGTTGGACCTGATCTATTTCCAAGTCGCTTTGGAGCCAAAAAGTTGAAGA
CTGGGAGAATTTCTCGAATATCGACAAAACAGAGAATATCTCGAGAAGGA
GAGTCTTCCTCGAAAAACGAAGGACCCCGCTGATGAAGATATCGTGTGCC
GCACTCTTTTTGGAAATCGGCTTGCCAGATCAAAAGTGCGAAAGCGGCGG
TTGTTATTCGTGAATGTTGGACATATCTCGAGGAAATGAGTTTTTCTCGA
AAGAACGAAACACCCGCTCTTGGGATTCCCGAGAGGGATCGTTTGCCGGA
CTCTTTTTCAAAGTCGGCTAGCTGGGTCAAATATGCGAAAGTTTTCAACT
TTCCCCAGTTTTTTTCTAATAGAAATGCGACGAAGAACAGAAGAAAAAAT
ATTTCTCCCTGGTTACATGCGCCTTGAGACAAGGCGTTTGCCGGTGTTTT
TGGTTTTTTGAACAACCACCCCAACCCCGAGGAAATTTCACATTTGGGCC
GGCGAAAACTGGGATCACTTGTTGTGCATGGACCATACACTACGGTATAC
CACGGTACGCTTGGTGTGGAATGTTGGATACACGTACTGGTATGCGCGGT
CTAGCGAGACCCCTGGTTGTGTCAGCGGGAAGATGCTCGCTGTTGTATCT
AGCAGCTACCAGCCGTGCGGTGCCACGCTATCTTGTTGTCACTAAACAGG
GCAGGTCGCCAAAAACCGGGCATACCACAGCTGCAAGAAGTAGAGTTTTT
TCAATTGAAATTTAGCCGGCATGATCCGTACCTGACGACGGCGTGCAGGC
AGATTCAGTGCTTGTGTGCGTGCGTGTGTGTTTTTTCAGAGCAGAGAGAG
AGAGAGATAGTCCGCTGTCGAAAGGCTCCGTGCTTGCGAAGAAATGGTTA
GGGGGCCTGTCGATGGTGTGATAATGATCTGCATACAACAGCAGTCATGG
TCCCGGTTTAGCGGCTCCCTGTCAAGCGGCATGCCCTGAAGATGTAGCAG
TTCCGAAATCTCGTGGCACCTCTGCACCTCGGTGCTCAAACAACTACATA
TGACTGCCATTCTATTTCGCGGCGATACCCTCAAAAACGGTTATAACATT
TCGACACTATGGACCTCTAAAACGGGACCGACTACCGTACGTGACACGAG
ATAACGCACCCCCTGGACCGATTTTTAAATCTCGATTTCTCAATAGCAGG
AAGAATCACAGCGCCGAAAACGGTGGCGTTGAAGCTGTCTTGTCCAGAGC
TTTCCGAAAATGTGTCGTTTCGTTTATGCATCCTCTTCGTCGAGGCGTAA
TCGAGATTTGAAAATTGGTCCAGGGGGCGTGTTATCCTGCGCCAATAGTC
GATATACCAACCTTTCGTTCGTTGGATACCACAACCCCCTCAATCGTCAT
ATGCCGAAGAGATGGCAAAAGCAAATGATACATCTTCCTTCCGGAATGAT
GTCGAGGGCGCGGTTCCAGCGACGTTGCCTTGTTCCCGGCACCCCTGCTG
TTTATGGGTTTATGCTGAAGACTGTGTTGGCGTTAAAGAAAACAACAAGA
ACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCGGTGTACAAGTAAGCCGTGTGTTTTGATCCAACCTAGT
TTACTTATTTACGGTAAGGTACCCTCCCTGTGACTACGGGAATCACTCGG
TCAAGTGTTTGATCAGTACGGACAGATGAAGGCACTGGGCAGAGAAATCT
TCACGGTTTTTTAATCTGAAGACAACAACAACAACAACAACCGTGATAAT
TTCCAGTCCTTCTCACAGAAAGTGCCTTGTCACAGAAATCTTGGTGCCCT
GACACAAATCTGGTGCCTTCTCACACAAATCTGGTGCCTTCTCACACAAA
TCTTGGTGCCCTCTCGCACATATCTTGGTGCCCTTCGTCGATTTTGGCTG
ACTTCCGTCGAAAGCACCATGTGTTTGGAGGGTCAAACTCGGAAGAGGGT
CTAGAACAAGTGAGACCCCTGGAAAGGTGCTCACGAGCTACGTACACGTG
CCATGGTGCCTCGTGTCGCCTCATCCTACAACGGATTCTGCAACCTAACA
CATGACACACTATGATTTGAGTCCCCTACTCCGATCGCGGTATTCAGCAA
TCAGGAAAAGCGTGGACTTTGTGAGCCATCGCGAAGTCACCCAGAGAGAG
CTCCGCCGAAACGCTGCGGCTGCCTTTCCTCTCGAAGTCATCTTGTATCC
GGTAGTTCCGTTCTTGAACCACGGTGCTGACTTGCCCCCCTCCACCTCCT
CCCATCTCCCGCGCGTGCCCTTCGTGCTGCACCGCCTGTTGTGGCTTATT
TTCGCTTGGACGCTTTGGAGAACAGGAGCGTCCGCGGTCGGCGCCCTCAA
CGTCAAGATCGTGCTGGGCGAGGAGGAGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13522:1122..4505-

>mRNA_Ecto-sp13_S_contig13522.2802.1 ID=mRNA_Ecto-sp13_S_contig13522.2802.1|Name=mRNA_Ecto-sp13_S_contig13522.2802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13522:1122..4505- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCGCAACGATGATGGTCGCGCTTGTGGCCGCGGTCGCCTCCCT
GGCGGCCGTCGGAAACGCGTTCGTCATGCCCCCCGCAGGCGTCGCGGGGC
GTAACGCCGGCCAGCAGGCGCTGGCACCCGCCACCTCGCAACCCGCTCCG
TCGCGCTCATCAGGAGCGTCCGCGGTCGGCGCCCTCAACGTCAAGATCGT
GCTGGGCGAGGAGGAGAAGTGA
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