prot_Ecto-sp13_S_contig1351.2793.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1351.2793.1
Unique Nameprot_Ecto-sp13_S_contig1351.2793.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length253
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1351.2793.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.490e-19
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:    1 MALWRSVEDLADASQVAAVYTKNLRGVPEYATWRQAGRVVSLMGKHEEAELLCQRSLAIFAKSFGPDHLTVTAALNNLALLVQHQ 85
            MALWRSVEDL   S+VAAVY  NL+GVPE+A WRQAGRV+ LMGK+ EA+ L  R++ I   + GPDH  +   LNN A L+  Q
Sbjct:  570 MALWRSVEDLVGESRVAAVYMNNLQGVPEHAPWRQAGRVLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1351.2793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W2_ECTSI6.490e-1957.65NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002151Kinesin light chainPRINTSPR00381KINESINLIGHTcoord: 189..210
score: 27.27
coord: 45..63
score: 30.53
coord: 110..127
score: 43.33
coord: 154..174
score: 53.33
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 114..147
e-value: 15.0
score: 13.5
coord: 156..189
e-value: 0.38
score: 19.8
coord: 72..105
e-value: 84.0
score: 6.8
coord: 198..231
e-value: 0.42
score: 19.7
coord: 30..63
e-value: 15.0
score: 13.4
NoneNo IPR availablePFAMPF13374TPR_10coord: 199..237
e-value: 2.1E-9
score: 36.9
NoneNo IPR availablePFAMPF13424TPR_12coord: 32..100
e-value: 4.0E-11
score: 43.0
coord: 114..187
e-value: 2.3E-17
score: 63.1
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 182..253
coord: 40..109
coord: 97..196
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 142..253
e-value: 3.2E-37
score: 130.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 30..141
e-value: 2.0E-30
score: 107.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 108..251
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 30..144
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 72..231
score: 12.09

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1351contigEcto-sp13_S_contig1351:55..2803 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1351.2793.1mRNA_Ecto-sp13_S_contig1351.2793.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1351 48..2803 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1351.2793.1 ID=prot_Ecto-sp13_S_contig1351.2793.1|Name=mRNA_Ecto-sp13_S_contig1351.2793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MALWRSVEDLADASQVAAVYTKNLRGVPEYATWRQAGRVVSLMGKHEEAE
LLCQRSLAIFAKSFGPDHLTVTAALNNLALLVQHQGKCAEVDPLYLRAIE
VGEKTLGPDHPDLANWLSNRAGLLQARGKYAEADPLYLRAIEIGEKTLGP
DHPGLATRLNNRALLLKTQGKYAEADPLYLRAIEIGEKMLGPDHPGLTTS
LSNRAVLLEAQGKYAEADPLYLRAIEIGEKTLGPDHPGLVTRLNNRTLLL
EAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom