mRNA_Ecto-sp13_S_contig1351.2793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1351.2793.1
Unique NamemRNA_Ecto-sp13_S_contig1351.2793.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1351.2793.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.490e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:    2 SLMALWRSVEDLADASQVAAVYTKNLRGVPEYATWRQAGRVVSLMGKHEEAELLCQRSLAIFAKSFGPDHLTVTAALNNLALLVQHQ 262
            +LMALWRSVEDL   S+VAAVY  NL+GVPE+A WRQAGRV+ LMGK+ EA+ L  R++ I   + GPDH  +   LNN A L+  Q
Sbjct:  568 ALMALWRSVEDLVGESRVAAVYMNNLQGVPEHAPWRQAGRVLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1351.2793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W2_ECTSI1.490e-1957.47NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1351contigEcto-sp13_S_contig1351:48..2803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score96.3
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7G6W2
Model size767
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1351.2793.1prot_Ecto-sp13_S_contig1351.2793.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1351 55..2803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.6895967-UTR-Ecto-sp13_S_contig1351:47..541681462721.6895967-UTR-Ecto-sp13_S_contig1351:47..54Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1351 48..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462721.7016265-CDS-Ecto-sp13_S_contig1351:54..1831681462721.7016265-CDS-Ecto-sp13_S_contig1351:54..183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 55..183 +
1681462721.7124496-CDS-Ecto-sp13_S_contig1351:1020..11461681462721.7124496-CDS-Ecto-sp13_S_contig1351:1020..1146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 1021..1146 +
1681462721.7202096-CDS-Ecto-sp13_S_contig1351:1408..15341681462721.7202096-CDS-Ecto-sp13_S_contig1351:1408..1534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 1409..1534 +
1681462721.7282314-CDS-Ecto-sp13_S_contig1351:1837..19631681462721.7282314-CDS-Ecto-sp13_S_contig1351:1837..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 1838..1963 +
1681462721.7386074-CDS-Ecto-sp13_S_contig1351:2255..23811681462721.7386074-CDS-Ecto-sp13_S_contig1351:2255..2381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 2256..2381 +
1681462721.7485456-CDS-Ecto-sp13_S_contig1351:2677..28031681462721.7485456-CDS-Ecto-sp13_S_contig1351:2677..2803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1351 2678..2803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1351.2793.1

>prot_Ecto-sp13_S_contig1351.2793.1 ID=prot_Ecto-sp13_S_contig1351.2793.1|Name=mRNA_Ecto-sp13_S_contig1351.2793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MALWRSVEDLADASQVAAVYTKNLRGVPEYATWRQAGRVVSLMGKHEEAE
LLCQRSLAIFAKSFGPDHLTVTAALNNLALLVQHQGKCAEVDPLYLRAIE
VGEKTLGPDHPDLANWLSNRAGLLQARGKYAEADPLYLRAIEIGEKTLGP
DHPGLATRLNNRALLLKTQGKYAEADPLYLRAIEIGEKMLGPDHPGLTTS
LSNRAVLLEAQGKYAEADPLYLRAIEIGEKTLGPDHPGLVTRLNNRTLLL
EAQ
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mRNA from alignment at Ecto-sp13_S_contig1351:48..2803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1351.2793.1 ID=mRNA_Ecto-sp13_S_contig1351.2793.1|Name=mRNA_Ecto-sp13_S_contig1351.2793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1351:48..2803+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTTGATGGCCCTTTGGAGGTCGGTGGAGGACCTCGCGGACGCGAGCC
AAGTCGCAGCTGTGTACACGAAGAACCTCCGAGGGGTACCGGAGTATGCA
ACGTGGCGACAGGCGGGCCGTGTTGTGAGCCTCATGGTGAGGCGCCGTAG
TGAACGTTCTGATGCGAATGAGCATCACAGTTCCATGTTGGACGATGCTC
AGCAGGTTGATGTAGCATCTGATGAACACTGCGGCGTTTTTTGTTTTGTG
TTTCAACCGCACTCCTGATGTGCCCACCGGTGCATCCTGGACTGTAGTCG
TGACACGAGGGTTGTCCTGTGATTAGACGCACGATAGAGCATTTCCCAAC
CATAAATGCTTGGATTTCTGTTGTGAGGTATTGGATTGAAAGGGTGTGGT
AATCTGCCCCAAGCTCTCGACCTTCGCAAAAGCTGCTGACGACAAGTTGC
TTAGGTGATGGTGAGGGTTCATTTTACAGAAGGAGAGACAACCGCGTGCA
GTAGAGCGTATGCGATGATATGCATTTATGCGAAGTACGGAACGCTACCA
TCTGACCAATATGTTTAGACAGCGAAAAGGGATACGTGACGTTTCAGGCA
TTTCTCGTCAGGCTTGAGGCAGCATGTCATGTGCTCGATTTGACGCGCAG
TGTAGCTGTCGGGGGAATAGATCTCGAGAGCATCTGTTCGGAAGACCGCT
GACTACTTGTTCGAATTCGTTGGATTATCAGCAAACAGCCGGGCACGCCA
GGTTACCATGTTGTGTTGTCCACTCACTTTTCCCTCGCATTCCAGGGCCA
GCATGAAGAAGCAGACACTAACCGCAACTGGACACTTGAAATTCTTGGTT
CAGCCGTGGGCGAAGAACAGCCCGACGATGCTTCAGTGCCCAACCGGATG
CTGTTGAGTGTTTTGTCCCCAACATTTACAAGTGTTGACCACATTCGTTG
TGCGGTTTGGCGTCGAGTTCCAGGGCAAGCATGAGGAAGCTGAGCTGCTA
TGTCAACGCTCCCTCGCCATCTTCGCGAAGTCTTTTGGGCCTGATCACCT
CACGGTGACCGCAGCACTCAACAACCTGGCGTTGTTGGTGCAGCACCAGG
TGAGAGCCAAAGGATTTGTTCTTGAATTTTCGAAGGGTTCAAACCGCTGT
GTGAAACTTTTCGTTTTAAGTACATGGCTGGCTGACCGAACCCGCTTTGT
GTTGCAAGTACGACCGGGCCAATGAACGTGTCACAAATCAATCAGACCGA
AGGCGCTGGGTCCAGAGCGGCCCCGATTTGGCCCATCGGGCGTTGTTCCT
CGGCAATATGCTGCACCAAGTCTTGGTTTACACCCCTTCACTCTTCTTCC
TCCTCTGCCAGGGCAAGTGCGCTGAGGTGGACCCTCTGTACCTTCGAGCT
ATTGAGGTCGGAGAGAAAACGCTGGGCCCTGATCACCCAGACCTCGCCAA
CTGGCTCAGCAACCGGGCGGGGTTGTTGCAGGCAAGGGTGAGAGCCCTGT
ACTTTTTCCGGAAATCTCGTAGGGTTCAAAGTTCTTTGTGAAATATCGGT
TGTTTGTACACCACTGGCTGACCGAACCCGTGCTGTTTGCAAAGGAAAAA
TAAGACGAGGCCGAACCCCTCTATGATCGTGTCAAAGTCAGTACGAGAGA
AGGCACTGGGTCCGGAACAAACCCGATATGGCCCAGTCGCTCTACAACCG
GGACGTGATTGTTGAGCCGTTTATCCCTCGACAAGATGCTGTACAAAGTC
TTTGTGTACGCCCCTTTCGTTCCTCCCCCTCTCCTTCCAGGGGAAGTATG
CTGAGGCGGACCCTCTGTACCTTCGAGCTATTGAAATCGGAGAGAAAACG
TTGGGCCCTGACCACCCAGGCCTGGCAACGAGGCTCAACAACCGGGCGTT
GTTGTTGAAGACCCAGGTGGAACCCAACGATTTGTACTGAATGTAGGGTA
GGGTTCAATTTTCTGTGAAAAACTTCTTTTTTTGGTAGAAAGTTGGCTGT
TCGAATCCACGTTGTATATGCACGACGAGACCGGGCCACTTGATGAGCGA
TGGCAGCCCGTCCGAGAAAAGACGCTGGGCCCGGAGCGAGCCCGATGTGA
CCCAGTCGCTCAACAACCGGAGTTGGATTGTGGAACGTTTGTTCCTCGGC
AATATGTTGTACCAAGCCTCGATTTTCACCCCTCGCGTTCCTCCTCCTCT
CTCTTTAGGGGAAGTATGCTGAGGCGGACCCTCTGTACCTTCGAGCTATT
GAGATCGGCGAGAAAATGCTGGGCCCTGACCACCCAGGCCTGACAACCAG
CCTCAGCAACCGGGCGGTGTTATTGGAGGCACAGGTAAGAGCCAAGAGAT
TGTCCTGGATACAGGGTAGGGTTCAATTGGCTGTGTGAAATTATGCGTTT
TTAGGTAGAAAGCTGGCTGGCCGAATCCACGTTGTATTGCAAAGGGTAAG
AACGACGAGGCCGAGCCACGTGATGAACGATCACAGTTAAATTGCTGGGT
CCGGAGCAACCCCGATCTGGCCCAGTCGCTCAACAACCGGGGCTGGATTG
TGGAACGTTTGTTCCTCGGCAATATCCTGTACCAAGCCTCGATTTTCACC
CCTTGCGTTCCTCCTCCCCTCGTTTGCCAGGGGAAGTATGCGGAGGCGGA
CCCTCTGTACCTTCGAGCTATTGAGATCGGCGAGAAAACGCTCGGCCCTG
ACCACCCAGGCCTGGTAACCAGGCTCAACAACCGGACGTTGTTGTTGGAG
GCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1351:48..2803+

>mRNA_Ecto-sp13_S_contig1351.2793.1 ID=mRNA_Ecto-sp13_S_contig1351.2793.1|Name=mRNA_Ecto-sp13_S_contig1351.2793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1351:48..2803+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCTTTGGAGGTCGGTGGAGGACCTCGCGGACGCGAGCCAAGTCGC
AGCTGTGTACACGAAGAACCTCCGAGGGGTACCGGAGTATGCAACGTGGC
GACAGGCGGGCCGTGTTGTGAGCCTCATGGGCAAGCATGAGGAAGCTGAG
CTGCTATGTCAACGCTCCCTCGCCATCTTCGCGAAGTCTTTTGGGCCTGA
TCACCTCACGGTGACCGCAGCACTCAACAACCTGGCGTTGTTGGTGCAGC
ACCAGGGCAAGTGCGCTGAGGTGGACCCTCTGTACCTTCGAGCTATTGAG
GTCGGAGAGAAAACGCTGGGCCCTGATCACCCAGACCTCGCCAACTGGCT
CAGCAACCGGGCGGGGTTGTTGCAGGCAAGGGGGAAGTATGCTGAGGCGG
ACCCTCTGTACCTTCGAGCTATTGAAATCGGAGAGAAAACGTTGGGCCCT
GACCACCCAGGCCTGGCAACGAGGCTCAACAACCGGGCGTTGTTGTTGAA
GACCCAGGGGAAGTATGCTGAGGCGGACCCTCTGTACCTTCGAGCTATTG
AGATCGGCGAGAAAATGCTGGGCCCTGACCACCCAGGCCTGACAACCAGC
CTCAGCAACCGGGCGGTGTTATTGGAGGCACAGGGGAAGTATGCGGAGGC
GGACCCTCTGTACCTTCGAGCTATTGAGATCGGCGAGAAAACGCTCGGCC
CTGACCACCCAGGCCTGGTAACCAGGCTCAACAACCGGACGTTGTTGTTG
GAGGCACAG
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