mRNA_Ecto-sp13_S_contig135.2783.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig135.2783.1
Unique NamemRNA_Ecto-sp13_S_contig135.2783.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig135.2783.1 vs. uniprot
Match: A0A6H5L294_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L294_9PHAE)

HSP 1 Score: 887 bits (2292), Expect = 0.000e+0
Identity = 462/494 (93.52%), Postives = 466/494 (94.33%), Query Frame = 1 
Query:    1 MVRTRANRLAFAFLVVSTATAADEIVTDNCCDSRDGNACCPGLPIVDEAANQPLLKESKLKVVYDPARCCSDGFETAVGCTAYGAAGCSFCRDACDKDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDAVSDDTDDLWVLLDDDKFDENIVASQSPGSYDFSDDPEQYDCSTCSWDGMSRLEQRILTQRSRSMVCDTTCLKDVGDPSYGVTLCNYFNAGKECRACCHEGFMVDGCMPCDGEGSCNSCITKIKKMCDQNPCEPECQAYVCCSVQWGEYSGCEETMHHEMAEIAAKISDRCNLLFTCDAINPICSTNARRCVAEPTAVSKDVQQATHERCRELAITGAGIFDTTYSSAESFSNEILFMAVDGQQFALQSVEIDACTDLDKLPFIIEASADVIVARSSTGYLAWDDGTDPHPHVANTGVGCPRHVWILQDTTGNQNHVFITVDLSEHPQFISSDWVKVDSEGKMSRTDLNLSCTKKKK-SVRF 1479
            MVRTRANRLAFAFLVVSTATA DEIVTDNCC SRDGNACCPGLPIVDEAAN PL +ESKLKVVYD ARCCSDGFETAVGCTAYGAAGCSFCRDACD DD     XXXXXXXXXXXXXXXXXXXXXXXXXX        +DLWVL  DDKFDENIVASQSPGSYDFSDDPEQYDCSTCSWDGMSRLEQRILTQRSRSMVCDTTCLKDVGDPSYGVTLCNYFNAGKECRACCHEGFMVDGCMPCDGEGSCNSCITKIKKMCDQNPCEPECQAYVCCSVQWGEYSGCEETMHHEMAEIAAKISDRCNLLFTCDAINPICS NARRCVAEPT VSKDVQQA HERCRELAITGAGIFDT YSSAESFSNEILFMAVDGQQFALQSVEIDACTDLDKLPFIIEASAD+IVARSSTGYLAWDDGTDPHPHVANTGVGCPRHVWILQDTTGNQNHVFITVDLSEHPQFISSDWVKVDSEGKMSR DLNLSC KKKK +VRF
Sbjct:    1 MVRTRANRLAFAFLVVSTATA-DEIVTDNCCGSRDGNACCPGLPIVDEAANLPLPEESKLKVVYDSARCCSDGFETAVGCTAYGAAGCSFCRDACDTDDESCVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANDLWVLFGDDKFDENIVASQSPGSYDFSDDPEQYDCSTCSWDGMSRLEQRILTQRSRSMVCDTTCLKDVGDPSYGVTLCNYFNAGKECRACCHEGFMVDGCMPCDGEGSCNSCITKIKKMCDQNPCEPECQAYVCCSVQWGEYSGCEETMHHEMAEIAAKISDRCNLLFTCDAINPICSINARRCVAEPTGVSKDVQQAAHERCRELAITGAGIFDTAYSSAESFSNEILFMAVDGQQFALQSVEIDACTDLDKLPFIIEASADIIVARSSTGYLAWDDGTDPHPHVANTGVGCPRHVWILQDTTGNQNHVFITVDLSEHPQFISSDWVKVDSEGKMSRVDLNLSCIKKKKKTVRF 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig135.2783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L294_9PHAE0.000e+093.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig135contigEcto-sp13_S_contig135:438..5771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1771
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_001490.1
Cds size1482
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462720.5500877-UTR-Ecto-sp13_S_contig135:437..7261681462720.5500877-UTR-Ecto-sp13_S_contig135:437..726Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig135 438..726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462720.5617664-CDS-Ecto-sp13_S_contig135:726..15151681462720.5617664-CDS-Ecto-sp13_S_contig135:726..1515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig135 727..1515 -
1681462720.5794992-CDS-Ecto-sp13_S_contig135:5078..57711681462720.5794992-CDS-Ecto-sp13_S_contig135:5078..5771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig135 5079..5771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig135.2783.1prot_Ecto-sp13_S_contig135.2783.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig135 727..5771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig135.2783.1

>prot_Ecto-sp13_S_contig135.2783.1 ID=prot_Ecto-sp13_S_contig135.2783.1|Name=mRNA_Ecto-sp13_S_contig135.2783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=494bp
MVRTRANRLAFAFLVVSTATAADEIVTDNCCDSRDGNACCPGLPIVDEAA
NQPLLKESKLKVVYDPARCCSDGFETAVGCTAYGAAGCSFCRDACDKDDE
SCVLCTVADSSGAKAATVSTSNESDDEDDSFDAVSDDTDDLWVLLDDDKF
DENIVASQSPGSYDFSDDPEQYDCSTCSWDGMSRLEQRILTQRSRSMVCD
TTCLKDVGDPSYGVTLCNYFNAGKECRACCHEGFMVDGCMPCDGEGSCNS
CITKIKKMCDQNPCEPECQAYVCCSVQWGEYSGCEETMHHEMAEIAAKIS
DRCNLLFTCDAINPICSTNARRCVAEPTAVSKDVQQATHERCRELAITGA
GIFDTTYSSAESFSNEILFMAVDGQQFALQSVEIDACTDLDKLPFIIEAS
ADVIVARSSTGYLAWDDGTDPHPHVANTGVGCPRHVWILQDTTGNQNHVF
ITVDLSEHPQFISSDWVKVDSEGKMSRTDLNLSCTKKKKSVRF*
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mRNA from alignment at Ecto-sp13_S_contig135:438..5771-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig135.2783.1 ID=mRNA_Ecto-sp13_S_contig135.2783.1|Name=mRNA_Ecto-sp13_S_contig135.2783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig135:438..5771- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGCACGAGGGCGAATCGTCTAGCATTCGCGTTCCTCGTCGTGTC
CACCGCAACAGCGGCGGACGAAATTGTCACCGACAATTGTTGCGACTCTC
GAGACGGAAACGCGTGCTGTCCTGGGCTGCCCATTGTAGACGAGGCCGCC
AATCAACCCCTCCTAAAGGAGAGCAAGCTCAAGGTTGTGTACGATCCCGC
ACGGTGCTGCTCGGATGGCTTCGAGACTGCGGTCGGGTGCACCGCCTACG
GCGCTGCAGGGTGTAGCTTCTGCAGAGATGCTTGCGACAAGGATGATGAG
TCGTGCGTGCTGTGCACAGTCGCTGACAGCTCTGGGGCCAAGGCAGCTAC
GGTTTCCACTTCCAATGAGTCCGACGACGAAGATGACTCTTTCGACGCCG
TCAGTGACGACACAGACGATTTATGGGTCTTGCTTGATGACGACAAGTTT
GACGAGAACATCGTGGCAAGCCAGTCTCCCGGGAGCTATGACTTCAGCGA
CGACCCGGAACAATACGACTGCTCGACCTGCTCGTGGGACGGTATGTCCA
GGCTGGAGCAGCGCATACTTACCCAGCGTTCAAGGTCTATGGTGTGCGAT
ACGACGTGCCTGAAGGATGTTGGCGACCCGAGCTATGGCGTGACGCTATG
TAACTACTTCAACGCAGGCAAAGAGTGTCGAGCATGCTGCCATGTGAGTC
GTTCTTGTCGGTTTTTCTTTGTATAAGAACATGCATTTTGCTCGTTCGTC
GGAAGAAGTTATGTGGGTGCCCATACTTTTACCAGTCGGACGACAGTAGG
TCGAGGATGCTGAATGTCCCTGTTAGATGCTGCTCTGATGGTAGCAATGA
ACCGCTGGTGGACACCACTTTCTACAATTTTCATGGTAGGACGCAACACC
CGACGCAATATTGTGAGATTCAGATGGAAACGTACAAGACTGTGGCGTTT
GGTAAATAATCTCCGAGGTGGTCAAGGGGCCGTATCATGTCGTGTCTCAC
CGGTAGGGTGAGTTCAATATCAGTATGTACAAATGGTCCAATCCCATCAA
AACGCGGGCGAAAAGTATACTTTCCTCGTGTCTATGTGATCCCGGCTGGT
TCGCGCGTCAAACACGTATCGAGGGGTGCAGGCTGGCGCTCACTACATTG
TAGATGGGATGACATAGACAAAATGCACACACAGCAGTTGTCGATAACGA
AAAGATACAGGAGTAGTAGACCTTCCAGAGCAATGGTGTCAGAGAAAGAT
CCAAAGACAAACGCAGGGGAAAACATGCGGAAGCTAAAGCAGTGGCAAGC
CCAACTGACCGAAGAGAAGTTTGATACAGAGTAGCCCCCGGCAAGGAAAT
GATGCTAGCGTGGGAGCAAACACTGTTGTAGGAATGCCACATTATGAGGT
TGAATCTCATCGCAAGTACATTGAATTCGGAGGCTAGACCCTATCGTCCA
ACCTCCTCAGCGCTCCCCCTCTGGAGAAGCCCAATGATGTGACAGCGCGA
TTGCATTTCATGTCCCGTCACAAAGCCCTGACGTATTTTCAATGGTCAGC
CGGTTAGCACGGTCGACGCCAATCAATGATACACACACATCGCTAGCAAC
TGTTTCCAACTCGTTTCCAACCTCACGTTGAGCAGCAAGCAATAGCACAC
GCTTGTAGAAAATAGACAGTTGCGGGTGCCATATACCTGCTGTACGTAGT
TCTTGTCGTCCAACGTTTTGACGTTATCCAGTGCGTAGTCTGAGTAGTAT
CCTACCGCTGCCTCATCAACTTGTCATGCCGATCAGTCGTGCGACCGTTG
GAACCAAATTGTTGTGAGTAGTGCGTTGTCCTGTTCTTCTGTAGGGTTCT
TCGAGATTCTGCCATGATGTTGCTTCGTCAATCTCGCCTACCCTGGCTTC
ATAAGTGGTAAGGTCGTGTTCCGTTTTGACCTGAACATCAGGTCTTCGGA
TGGGTTGCACCTCTACCAGTAATCGTGGGTACACGTCTCAAATCTGGACC
CCCTCGTCAATCCTCGACAGGCAGTCATCCTTGACACTCAATATTTTCCT
TTGCTCTCCCTTGAGTTTCTCCCTCTCCCCGCCCCCCATACCATGCCTCA
CGTGAAACTGACACCGACAATCCCCCCACCTGTGAGGTTCGAGAGTGGAT
TGTTCGAGGTAGGGTTGGCTCGTGTGGCATAGAGCTCTAAAATTTCATAT
ATAGGGCACGGGGTTTTTTAGTACGGTATATCCCGTGAGCTTGTGGGCTT
CAGTCCTGCAGTTCACACCCTATAGCTTTGTCCAATAAGCATTGGACAGT
TGACTGAACAAAAAACTACTTGTCCAAGATTAATGGTACTCGATCAAGAA
TGTTTCCTCCTGGAGCATAGAAGCAGATTGTACTCCAAGTGTATCACACA
CGAAACGACGTGTTCGCTGCGTGTGTCACTCCTATCGTGTACAAGCCCGA
AAAGATCGAAGTCCCTTGCGGGACTTAAAGTAGAGTTATACCTGCCGAAC
GTGAAAGTCGGGATGCCCAATCAGCCCATGGCGTATCTGGTCTCCCCGGC
AAATGCAAGGATGACGATGAAGTTCTGGTTCATCCTTGTGAAACGTAGCC
TGAGTCGGCACAAACCTGGCATATCGCTCCATCCCCACCTTGTTGAGGTG
CGAGGTTTATGGTCTACCCACTACGGCATGCATATAATACCCCCAAAAAC
AGTGCCCATAACTGTCTCTGGAAGTGAAAGCACCAGAAAATAAAATCGCA
GCTGTCATCCGTATGCAACGAAGTAAACACAAGATGCCGAACACCCTCAG
CAGGATGCAGCGCACCCTTCATGCGACTNNNNNNNNNNGATGTGAGAGCC
TGGTCCGGTGAGAGCCCGGCGTGCTCCGTCCCGGCTTAATGGGGATGCGA
GGTCAAGAGTCTAGCGGCTACAGCATGCACGACTATGAGTACATCCCCCC
CCCTCTATATGATGCCCTGAGAAGACATTCCACACAAAATTTAGCGGGCC
ACACAGGGAGCGCTACATGACTTCGGGGTACGCACGTTTTGCTACCTAAG
CCCGAATCGGGAGTATTGAGGTCGCACATGTCGACCAATCATGACGAGTG
AACGTTAAAATGACTGTAGACGCAGTCGTTCTTCTATGTGCTGTCCATAC
TGATAGCTACCAAGTGTGTGCGTCGGAACATATCGGCTATGGAGTTGTCT
TTTGATCAACTGCACCGTTTACTTAATTCCTTAAAGTGTCTACAGAGCCT
CCGTTGCAGAGAATCACCCCGGGGTCATCCTTTTGGCTCGTGTCTAACAA
TCCCGCCCCGGGGCCTACCGTATTCAGTATTTCCTTGGCAGCCCCCTTTT
AACAGCTCATCATATTTGTGAGCTCTGACAGCGTCTCAGCAAGCCAAATT
AGAATGCTCTCAGCTTCATGGGGCTTCGACACATCTTGATGCTTGCTGTG
AGTACCAAACGTACGACCACATATGTTTTTTTCTGGTTTACACTTTCGCT
TGAACAAAGGAAGTTCGGGGTCGGATCCACGCATAAAAGGAACAGAAGTC
CCTCCTCCTGTTGACGGCACACTTTCTCGCACATCCCGCTGTAGTCAGTA
GCCAACTTCGAGCAGAGAACGTTCTCTCAGTCGTCGACTTTCCTTGTCCA
TGGCCTCGAAAACAAAAGCAATATTAAATGAATGATGCCGCAGGATACTC
CCTTCGTGCATAGCCACTCTTACTCGCCGCACATACAGGAGTTATCACAG
CACCAAATAATGTTTTTCCAGCGAGCTCCCACGGAATTTCAACAGTCGTT
CTCCCCACGCCTACCACAAGCAAAACGGGTGTATTCTATGCTACTCACAT
GTCGAAGACTTAATATCCAATACGTATGCTTCAATTCGAGAAGTCTTGTG
CTTCAATGGGAGTTCACATCGCGTTGAACCCAGTTATCTATTTCGGGCTA
CGCCGTGTGAGGTAACATTCTTTGAACCGGTGAACGCACTTGAAACTGTT
CTTTCAGAGCGAACGGGTCAATAACCCCCCCGTGCTTCGCCCCTTGAAAT
CGCGTTTTTCTCTCTAGACTATGAAGGAAAACCATACCGACTGTTACGCA
ATAGGCGAGTCCCACAAAATTGTCCGTTTTCGTCCTCCGAGCTTTGCCTT
TCGTTTCTGGTGTCATATCCAACCCTTGAGCCCATGAGATGAGATGCGGA
GTTCTAGAATCAACCCCCATAGCCCACATATTGCCCTTGCTTCTCTCCGA
TTCCAGGAAGGCTTTATGGTCGACGGATGCATGCCATGCGACGGAGAGGG
ATCTTGCAACTCCTGCATCACCAAAATCAAGAAAATGTGCGACCAAAACC
CGTGCGAACCCGAATGCCAGGCCTATGTTTGCTGCTCAGTGCAGTGGGGC
GAGTACTCCGGCTGTGAAGAAACGATGCACCATGAGATGGCTGAAATCGC
TGCCAAAATCAGCGACCGCTGCAACTTGCTCTTCACCTGCGACGCAATAA
ATCCGATTTGCTCGACCAATGCTCGTAGATGCGTGGCAGAACCTACAGCC
GTCAGTAAGGACGTGCAGCAAGCGACTCACGAACGCTGCCGTGAGTTGGC
CATTACCGGCGCCGGAATCTTCGATACTACCTACTCCTCAGCGGAATCTT
TCAGCAACGAGATCCTCTTCATGGCCGTCGATGGCCAGCAGTTCGCCCTG
CAGTCTGTAGAGATCGATGCGTGCACAGACTTGGACAAACTTCCGTTCAT
CATCGAGGCGAGCGCGGATGTCATCGTCGCTCGCTCCAGCACGGGATATC
TGGCGTGGGACGACGGCACTGATCCCCATCCTCACGTTGCGAACACGGGG
GTCGGCTGCCCCCGACACGTGTGGATCCTGCAAGACACGACAGGAAACCA
GAACCATGTTTTCATCACGGTGGATCTAAGCGAGCACCCCCAGTTCATCT
CTTCTGACTGGGTTAAGGTTGACTCGGAGGGGAAGATGAGTCGAACCGAC
CTAAACTTGTCTTGCACTAAGAAGAAGAAGAGTGTCAGGTTCTAGGCAAG
CTACGAGTCGGTAGAATGGAGCCAGCTCGGTAGAACTACGGAAGATGGAA
TGACGGGGCAGAAACCTGACACTATACGTGTTGTTGTTTTGTTGTTGTGA
GCGCAAATAGGTGCGATTTGGTGTTTGTTTTATATCCTTTTTATACCCAG
TGAGATATTTGCGGGGCAAGACGTGCCCAGAGGTGTAAAATAGCGGGAGT
GCCGAGTAAGGATGGGTAGGATACACCGAGGGTCGCTTGTGTGTTGAGTG
TCTGAAACCGAATTGTTGCGTAACCTGTTGTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig135:438..5771-

>mRNA_Ecto-sp13_S_contig135.2783.1 ID=mRNA_Ecto-sp13_S_contig135.2783.1|Name=mRNA_Ecto-sp13_S_contig135.2783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig135:438..5771- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGCACGAGGGCGAATCGTCTAGCATTCGCGTTCCTCGTCGTGTC
CACCGCAACAGCGGCGGACGAAATTGTCACCGACAATTGTTGCGACTCTC
GAGACGGAAACGCGTGCTGTCCTGGGCTGCCCATTGTAGACGAGGCCGCC
AATCAACCCCTCCTAAAGGAGAGCAAGCTCAAGGTTGTGTACGATCCCGC
ACGGTGCTGCTCGGATGGCTTCGAGACTGCGGTCGGGTGCACCGCCTACG
GCGCTGCAGGGTGTAGCTTCTGCAGAGATGCTTGCGACAAGGATGATGAG
TCGTGCGTGCTGTGCACAGTCGCTGACAGCTCTGGGGCCAAGGCAGCTAC
GGTTTCCACTTCCAATGAGTCCGACGACGAAGATGACTCTTTCGACGCCG
TCAGTGACGACACAGACGATTTATGGGTCTTGCTTGATGACGACAAGTTT
GACGAGAACATCGTGGCAAGCCAGTCTCCCGGGAGCTATGACTTCAGCGA
CGACCCGGAACAATACGACTGCTCGACCTGCTCGTGGGACGGTATGTCCA
GGCTGGAGCAGCGCATACTTACCCAGCGTTCAAGGTCTATGGTGTGCGAT
ACGACGTGCCTGAAGGATGTTGGCGACCCGAGCTATGGCGTGACGCTATG
TAACTACTTCAACGCAGGCAAAGAGTGTCGAGCATGCTGCCATGAAGGCT
TTATGGTCGACGGATGCATGCCATGCGACGGAGAGGGATCTTGCAACTCC
TGCATCACCAAAATCAAGAAAATGTGCGACCAAAACCCGTGCGAACCCGA
ATGCCAGGCCTATGTTTGCTGCTCAGTGCAGTGGGGCGAGTACTCCGGCT
GTGAAGAAACGATGCACCATGAGATGGCTGAAATCGCTGCCAAAATCAGC
GACCGCTGCAACTTGCTCTTCACCTGCGACGCAATAAATCCGATTTGCTC
GACCAATGCTCGTAGATGCGTGGCAGAACCTACAGCCGTCAGTAAGGACG
TGCAGCAAGCGACTCACGAACGCTGCCGTGAGTTGGCCATTACCGGCGCC
GGAATCTTCGATACTACCTACTCCTCAGCGGAATCTTTCAGCAACGAGAT
CCTCTTCATGGCCGTCGATGGCCAGCAGTTCGCCCTGCAGTCTGTAGAGA
TCGATGCGTGCACAGACTTGGACAAACTTCCGTTCATCATCGAGGCGAGC
GCGGATGTCATCGTCGCTCGCTCCAGCACGGGATATCTGGCGTGGGACGA
CGGCACTGATCCCCATCCTCACGTTGCGAACACGGGGGTCGGCTGCCCCC
GACACGTGTGGATCCTGCAAGACACGACAGGAAACCAGAACCATGTTTTC
ATCACGGTGGATCTAAGCGAGCACCCCCAGTTCATCTCTTCTGACTGGGT
TAAGGTTGACTCGGAGGGGAAGATGAGTCGAACCGACCTAAACTTGTCTT
GCACTAAGAAGAAGAAGAGTGTCAGGTTCTAG
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