mRNA_Ecto-sp13_S_contig10257.278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10257.278.1
Unique NamemRNA_Ecto-sp13_S_contig10257.278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: D7G2X6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2X6_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.220e-86
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 1
Query:    1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQLWRLVP 429
            MPLSTALSFVAVGACWGCTTPFIKDGTSSKLE DT+QQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQD+STAVPVCNALSLVFTAATAMA+GEKV+ PLRTVSGIVL LMGLAVCVASK QL  LVP
Sbjct:    1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLEPDTQQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDVSTAVPVCNALSLVFTAATAMALGEKVDRPLRTVSGIVLALMGLAVCVASKAQLLTLVP 143          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A7S2V8D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.410e-32
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 MPLSTALSFVAVGACWGCTTPFIKDGTS----SKLESDTKQQPTTNENN----RLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            M + TA+ F+ VGA WGCTTPF++ GT     +K +  T+ +P  NE       + KLF PL  L   +AA+ + LNQ GS L+YYLLSSQD+S AVP+CN+L+LVFTA T   +G  V    ++  GI LV+ G+ +CV S 
Sbjct:    1 MEMQTAVFFILVGAMWGCTTPFMRTGTEETEKNKDDPATETRPVQNERKVAAGGIAKLFEPLLRLLRPQAALAYGLNQGGSLLYYYLLSSQDISLAVPICNSLTLVFTALTEWVLGTAVRDTWKSALGISLVIFGVTICVLSN 143          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A448Z7G1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7G1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.350e-30
Identity = 56/134 (41.79%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   19 LSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-----LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            LS + VGA WGCT P ++ G+S   ES + ++P  +++          L   LRS A+V   +P++LNQSGS +FY LL++ D+S AVP+CNA++L+F+  T+  +GE +  PLRT +G  L+++G+A+CV+S+
Sbjct:    9 LSMLLVGALWGCTNPLLRKGSSDAEESSSAKRPDASDDGSXXDSSSSFLVSSLRSFANVGVWLPYVLNQSGSIVFYVLLANSDISMAVPICNAMALLFSFLTSSLLGEPIQKPLRTGAGAFLIMVGVAICVSSQ 142          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A225WLS3_9STRA (Putative membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLS3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.960e-29
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    7 LSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQ 411
            +ST LSF+ VGA WGCT P IK G++  +    K    +N     GK L G +++   V   +PF LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+  +GEK   P+ T +G+ L+L+G+A+C  SK Q
Sbjct:    5 ISTLLSFLFVGALWGCTNPLIKRGSNDSVMYTRK----SNSVGEFGKQLIGLVKNWQFV---LPFALNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPVSTYTGMFLILLGVAICFDSKQQ 133          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A8K1C6X8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6X8_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 4.290e-28
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   10 STALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            ST LSF+ VGA WGCT P IK G+   +   T++  +  E  R G     +  + + +  +PFLLNQSGS  + YLL S D+S AVP+CN+L+ VFTA T+  +GEK   PL T +G+VL+L+G+ +C  SK
Sbjct:    7 STLLSFLFVGALWGCTNPLIKTGSGDDVMY-TRRDNSAAEFARQG-----VHLVKNWRFVVPFLLNQSGSVAYVYLLGSTDISNAVPICNSLTFVFTAMTSRLLGEKPRRPLSTYTGMVLILLGVLLCYQSK 132          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A3R7KFJ3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFJ3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.810e-28
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   10 STALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            ST LSF+ VGA WGCT P IK G      SD        +N+    +   +  + + +  +PF+LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+  +GEK   P+ T +G+VL+L+G+A+C  SK
Sbjct:    6 STLLSFLFVGALWGCTNPLIKRG----KRSDDDAMYARKDNSVQEFVKQVVHLVKNWQFVLPFILNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPISTYTGMVLILLGVAICFNSK 133          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A7S4AM60_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM60_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.210e-27
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   19 LSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQ 411
            LS + VGA WGCT P ++ G S+++ES +  +       +   L   L+S  +VK  +P++LNQSGS +FY LL++ D+S AVP+CNA +L+F+  T+  +GE +  P RT +G  L+++G+A+CV+S+ Q
Sbjct:   39 LSMLVVGALWGCTNPLLRKG-SAEVESSSSSK-------KKNILASALKSFLNVKVWLPYVLNQSGSVVFYVLLANSDISMAVPICNATALLFSFVTSSLLGEPIQKPFRTAAGAFLIMVGVAICVSSQEQ 161          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: D0MUD0_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUD0_PHYIT)

HSP 1 Score: 106 bits (265), Expect = 6.950e-27
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   13 TALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLA-SVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            T LSF+ VGA WGCT P IK G++  +         T ++N +G+       +  + +  +PF LNQSGS ++ YLL S D+S AVP+CN+L+ VFTA T+  +GEK   P  T +G+VL+L+G+A+C  SK
Sbjct:    7 TLLSFLFVGALWGCTNPLIKRGSNDDVMY-------TRKDNSIGEFTKQAVGIVKNWQFVLPFALNQSGSVVYVYLLGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSK 131          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: A0A2D4C7R2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7R2_PYTIN)

HSP 1 Score: 106 bits (265), Expect = 8.460e-27
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGK-LFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            M  +T LSF+ V A WGCT P IK GTS            T  +N + + L   L  + + +  +PFLLNQSGS  F +LL+S ++S+AVP+CN+L+ VFTA T+  +GE    PL T +G+ L+L G+ VC  +K
Sbjct:    1 MATTTLLSFLLVSALWGCTNPLIKRGTSQSPAGSRADAVYTRRDNSVKEWLAQALHWIRNWQFVVPFLLNQSGSVAFVHLLASAEISSAVPICNSLTFVFTAITSRVLGEVPRRPLWTYTGVALILAGVFVCFQAK 136          
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Match: F0W5K4_9STRA (Uncharacterized protein AlNc14C21G2169 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.430e-26
Identity = 57/133 (42.86%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    7 LSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKLFGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFTAATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASK 405
            ++T  SF+ +GA WGCT P +K G+ S +   T++  +  E  R    F     L + K  +PFL+NQSGS ++ YLL S ++S AVP+CN+LS VFTA TA  +GEK   P  T +G++LV +G+ +C  SK
Sbjct:    4 VNTLASFLVIGALWGCTNPLMKKGSVSNVY--TRENNSVRECVRFIVAF-----LTNWKFTVPFLVNQSGSMVYVYLLGSTELSNAVPICNSLSFVFTAITATLLGEKSKQPACTYAGMLLVCIGVLICYNSK 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10257.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X6_ECTSI2.220e-8693.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V8D6_9STRA2.410e-3246.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A448Z7G1_9STRA6.350e-3041.79Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A225WLS3_9STRA7.960e-2945.59Putative membrane protein n=1 Tax=Phytophthora meg... [more]
A0A8K1C6X8_PYTOL4.290e-2845.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7KFJ3_9STRA6.810e-2843.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S4AM60_9STRA2.210e-2741.22Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
D0MUD0_PHYIT6.950e-2743.18Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A2D4C7R2_PYTIN8.460e-2742.65Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
F0W5K4_9STRA2.430e-2642.86Uncharacterized protein AlNc14C21G2169 n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10257contigEcto-sp13_S_contig10257:4742..5879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score258.5
Seed ortholog evalue1.9e-66
Seed eggNOG ortholog2880.D7G2X6
Preferred nameTMEM234
Model size432
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Putative transmembrane family 234
EggNOG OGsKOG4831@1,KOG4831@2759
Ec32 ortholog descriptionUncharacterised protein family UPF0546
Ec32 orthologEc-09_004560.1
Cds size432
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.3548565-CDS-Ecto-sp13_S_contig10257:4741..49231681462519.3548565-CDS-Ecto-sp13_S_contig10257:4741..4923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10257 4742..4923 -
1681462519.3649454-CDS-Ecto-sp13_S_contig10257:5164..53381681462519.3649454-CDS-Ecto-sp13_S_contig10257:5164..5338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10257 5165..5338 -
1681462519.3736422-CDS-Ecto-sp13_S_contig10257:5803..58791681462519.3736422-CDS-Ecto-sp13_S_contig10257:5803..5879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10257 5804..5879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10257.278.1prot_Ecto-sp13_S_contig10257.278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10257 4742..5879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10257.278.1

>prot_Ecto-sp13_S_contig10257.278.1 ID=prot_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MPLSTALSFVAVGACWGCTTPFIKDGTSSKLESDTKQQPTTNENNRLGKL
FGPLRSLASVKAAIPFLLNQSGSTLFYYLLSSQDMSTAVPVCNALSLVFT
AATAMAIGEKVNHPLRTVSGIVLVLMGLAVCVASKVQLWRLVP*
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mRNA from alignment at Ecto-sp13_S_contig10257:4742..5879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10257.278.1 ID=mRNA_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:4742..5879- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACTCTCAACAGCGTTGAGCTTCGTCGCCGTGGGAGCGTGTTGGGG GTGCACCACTCCTTTCATTAAAGACGGTGAGGTTAAGGTGGCGATGCGGA TACGCGTATCACCAAAGCGAAATCTAGTTGTAAGCCTCAAGTCTAGATGC ATTCGTTTGGAATAACGGCGTTTTTGAGGGCCCCCCTCCTGTACAGTAAT AGTCTTCTTGTTGCCTGACCGTTTGGGGAACATGAACAGCAGTGCCGTCC GTAAACAATGAGACTACACCACCTACTGCTGAAGCGCTCTCTGATAGGTG CTGCACACGTCGGGATATCTGGTGCAGTTCGCTTGAAGGGTTGGGGGTGC CAATATTGGGTCGATTGACACCCACCGGGGGATGCGAACGAGAGGTGCAC TCTGTGGTTACATCGTAAGTAACCCCCACGAAAATGTTGTACATTCGTCG CAATATGCAATATAAAGAACGACCCTACGCAACGGTTTTACTTCAGCGGG AGATAACACCAGCTGGACGGTATGGTTTCGTAAACTCGCAGGGACCTCAA GCAAGTTGGAGTCCGACACTAAGCAACAGCCGACGACCAACGAGAACAAT CGACTCGGGAAGCTCTTCGGCCCCCTTCGAAGTCTGGCTTCGGTGAAGGC CGCAATACCCTTCTTGCTCAATCAGTCCGGGTCCACGCTTTTCTACTATC TTCTCAGTTCCCAAGGTACAGATTTCGCGCCTCCACGAGGGAACGGTAGA TTCAAGACTGAGCCACATCGGGGGGCACTGCCCGCGACTCGTCTTGTTGC ACTCTTGAGTCGTACAACGGCCCTGTTGCTTTATTGTTGAGATTTGAGGC ATTCGTCAGGTCAACCTCTCGTGTTCCACATGCTGTTCGTGTCTCCGTCC CTAGTTGACCATTGAAAAGTTCATCCTTGACGCCATCCGTGGCGCCTTTT CCCCAGACATGTCTACAGCCGTGCCTGTGTGCAACGCGCTGTCGCTCGTC TTCACCGCCGCCACCGCCATGGCGATAGGGGAGAAGGTGAACCATCCACT TCGAACGGTGTCGGGCATTGTCCTTGTGCTGATGGGACTCGCCGTTTGTG TCGCCAGCAAGGTGCAGCTGTGGAGATTGGTTCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10257:4742..5879-

>mRNA_Ecto-sp13_S_contig10257.278.1 ID=mRNA_Ecto-sp13_S_contig10257.278.1|Name=mRNA_Ecto-sp13_S_contig10257.278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10257:4742..5879- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCACTCTCAACAGCGTTGAGCTTCGTCGCCGTGGGAGCGTGTTGGGG
GTGCACCACTCCTTTCATTAAAGACGGGACCTCAAGCAAGTTGGAGTCCG
ACACTAAGCAACAGCCGACGACCAACGAGAACAATCGACTCGGGAAGCTC
TTCGGCCCCCTTCGAAGTCTGGCTTCGGTGAAGGCCGCAATACCCTTCTT
GCTCAATCAGTCCGGGTCCACGCTTTTCTACTATCTTCTCAGTTCCCAAG
ACATGTCTACAGCCGTGCCTGTGTGCAACGCGCTGTCGCTCGTCTTCACC
GCCGCCACCGCCATGGCGATAGGGGAGAAGGTGAACCATCCACTTCGAAC
GGTGTCGGGCATTGTCCTTGTGCTGATGGGACTCGCCGTTTGTGTCGCCA
GCAAGGTGCAGCTGTGGAGATTGGTTCCATGA
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