mRNA_Ecto-sp13_S_contig13486.2776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13486.2776.1
Unique NamemRNA_Ecto-sp13_S_contig13486.2776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.570e-73
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADRHGDLALPPSK 306
            MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFAT PSCSACGISGLCPSADRHGDLALPPSK
Sbjct:  188 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATRPSCSACGISGLCPSADRHGDLALPPSK 289
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: K3WGK0_GLOUD (ENDO3c domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGK0_GLOUD)

HSP 1 Score: 143 bits (361), Expect = 9.060e-42
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADR 276
            M+ AW    GICVDTHVHRISNRLGWVDTWN   PKAQ P+KTR+ LQ WLP+EHW ++N LLVG GQ+VCF+ +P CS C +S LCPSA +
Sbjct:   67 MNCAWKNVVGICVDTHVHRISNRLGWVDTWNTKNPKAQGPQKTRQELQDWLPQEHWGQLNLLLVGLGQKVCFSRNPKCSECRLSHLCPSATK 158
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: A0A7S2V6M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6M2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.160e-41
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSA 270
            MD+AW +  GICVDTHVHR+SNRLGWV+TWN  +P++QNPEKTRK L+ WLPR+ W ++N LLVG+GQ VC A +P+CS+C I   CPSA
Sbjct:   26 MDIAWDQTVGICVDTHVHRLSNRLGWVETWNHKKPRSQNPEKTRKALEKWLPRDSWGQINPLLVGYGQSVCKAINPACSSCCIQQQCPSA 115
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: F0X2C6_9STRA (Endonuclease III homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2C6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.130e-40
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADRH 279
            M+VAW +  GICVDTHVHRI NRLGWV TWN+  PKAQ+PEKTRK L+ WLP EHW  +N+LLVGFGQ +C A  P C  C +  +CPSA ++
Sbjct:  224 MNVAWNKPVGICVDTHVHRICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCKDCALQSICPSASKN 316
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: K3WGH9_GLOUD (Endonuclease III homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGH9_GLOUD)

HSP 1 Score: 143 bits (361), Expect = 3.010e-40
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADR 276
            MD AW    GICVDTHVHRISNRLGWV+TWN+  PKAQ+PEKTR  LQ WLP+EHW  +N LLVGFGQ +C   +P C+ C IS LCPSA++
Sbjct:  194 MDCAWNNVVGICVDTHVHRISNRLGWVNTWNKKNPKAQDPEKTRAELQDWLPQEHWGPINVLLVGFGQTICQPRNPKCTECKISHLCPSANK 285
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: A0A5D6Y8M4_9STRA (Endonuclease III homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8M4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.550e-40
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADR 276
            MD AW    GICVDTHVHRISNRLGWV TWN+  PKAQ+PEKTR+ LQ WLPREHW  +N LLVGFGQ +C   +P C  C I+ LCPSA R
Sbjct:  230 MDCAWSNVAGICVDTHVHRISNRLGWVTTWNKKNPKAQDPEKTRRELQDWLPREHWGPLNLLLVGFGQTICQPRAPKCDECSITHLCPSAHR 321
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: H3G4Y0_PHYRM (Endonuclease III homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G4Y0_PHYRM)

HSP 1 Score: 141 bits (355), Expect = 8.230e-40
Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSA 270
            M+ AW    GICVDTHVHRISNRL WV TWN+N PK+QNPEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I G+CPSA
Sbjct:  157 MNCAWNNAVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGVCPSA 246
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: A0A6A3KHN9_9STRA (Endonuclease III homolog n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHN9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.330e-38
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSAD 273
            ++ AW    GICVDTHVHRISNRL WV TWN+N PK+QNPEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P C+ C I G+CPSA+
Sbjct:  223 LNCAWNNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPRCNECKIRGICPSAN 313
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: A0A329RX62_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX62_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.330e-38
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSAD 273
            M+ AW    GICVDTHVHRISNRL WV TWN+N PK+Q+PEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I G+CPSA+
Sbjct:  223 MNCAWKNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSAN 313
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BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Match: A0A3F2RMS3_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMS3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.200e-38
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSA 270
            M+ AW    GICVDTHVHRI+NRL WV TWN+N PK+Q+PEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C I G+CPSA
Sbjct:  215 MNCAWDNTVGICVDTHVHRIANRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIQGICPSA 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13486.2776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS9_ECTSI2.570e-7399.02Endonuclease III homolog n=1 Tax=Ectocarpus silicu... [more]
K3WGK0_GLOUD9.060e-4266.30ENDO3c domain-containing protein n=1 Tax=Globispor... [more]
A0A7S2V6M2_9STRA1.160e-4164.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0X2C6_9STRA1.130e-4062.37Endonuclease III homolog n=1 Tax=Albugo laibachii ... [more]
K3WGH9_GLOUD3.010e-4066.30Endonuclease III homolog n=1 Tax=Globisporangium u... [more]
A0A5D6Y8M4_9STRA3.550e-4067.39Endonuclease III homolog n=1 Tax=Pythium brassicum... [more]
H3G4Y0_PHYRM8.230e-4065.56Endonuclease III homolog n=1 Tax=Phytophthora ramo... [more]
A0A6A3KHN9_9STRA1.330e-3862.64Endonuclease III homolog n=4 Tax=Phytophthora TaxI... [more]
A0A329RX62_9STRA1.330e-3863.74Endonuclease III homolog n=2 Tax=Phytophthora TaxI... [more]
A0A3F2RMS3_9STRA2.200e-3863.33Endonuclease III homolog n=2 Tax=Phytophthora kern... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13486contigEcto-sp13_S_contig13486:85..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score229.2
Seed ortholog evalue8.9e-58
Seed eggNOG ortholog2880.D7FTS9
Preferred nameNTH1
Model size309
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
Exons3
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
Cds size309
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.910388-CDS-Ecto-sp13_S_contig13486:84..1401681462719.910388-CDS-Ecto-sp13_S_contig13486:84..140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13486 85..140 +
1681462719.922007-CDS-Ecto-sp13_S_contig13486:1092..12031681462719.922007-CDS-Ecto-sp13_S_contig13486:1092..1203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13486 1093..1203 +
1681462719.9347527-CDS-Ecto-sp13_S_contig13486:1900..20421681462719.9347527-CDS-Ecto-sp13_S_contig13486:1900..2042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13486 1901..2042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13486.2776.1prot_Ecto-sp13_S_contig13486.2776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13486 85..2042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13486.2776.1

>prot_Ecto-sp13_S_contig13486.2776.1 ID=prot_Ecto-sp13_S_contig13486.2776.1|Name=mRNA_Ecto-sp13_S_contig13486.2776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGW
LPREHWSEVNELLVGFGQQVCFATSPSCSACGISGLCPSADRHGDLALPP
SK*
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mRNA from alignment at Ecto-sp13_S_contig13486:85..2042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13486.2776.1 ID=mRNA_Ecto-sp13_S_contig13486.2776.1|Name=mRNA_Ecto-sp13_S_contig13486.2776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1958bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13486:85..2042+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTGGCCTGGGGACGGAACGAAGGGATCTGCGTCGACACCCATGT
GCACAGGTACGTACTAGCAAGGTATCCGCGGAGGGGAGGGGCGAGCACCC
AGTGAACACCATCTCCTTTGGCGAGGGGAAGTTTGTGTTGAAATGTTTTT
TCGTCGTTCTCACTCGACTTTTCTTTTTTCCTTTCGCCGGGGACTGGGAA
ACGTGGAATTCTGCAAGCTGCTGAAGTTTGTGTTGAAATGTTTTTTCGTC
GTTCTCACTCGACTTTTCTTTTTTCCTTTCGCCGGGGACTGGGAAACGTG
GAGTTCTGCAAGCTGCTTGGTTTCGTGCTTGACGTACCACGTCAAGGAAT
TCGTAGTAGCAGGACGAGTATTTGCGTCTATTGTCCGCGTGTACTTTGCC
CAAGCACCGCAGGAACCGTCGATCGTTGTGGAAGCCTACTCAGTACGATC
GCGTATTGACTGGTATTACCGGAAGTATGATTCTAAAAGGTCGCCGCTAG
TCTGTTCCAACTCCACTCCCCCCCCCTGTACTCACTTTGTGGTGCATTCT
ACGGTCATCTTTGAGCACGTCATCGTTGAACACCCCGTTGACGACCCTCC
GCCGCACGTTCTGGTGCCTGGGCGTAAAACGATTTTAGCCTTGTCTACAT
CACCTGCAACAAACCGATCGGATAGAGAAGAATGGTATGGTGTCGCGGTT
GTCAGGGGACGCCGAAGGCGTCGCTTCCGGTGTTGTTGGGTGGATATTCG
AGAGGAAAAGCCCTGAGCGCACCGAACATCGTGGCCTAGTCTATTTTTCC
CGTGTCCCCACGTCCTCGCAACACCTGTGGGTGCGAGGAAACTTTGCGGC
CTGGAGTCGACCAATGGCATATTGCTCCTATCTGCCGGCTTGATTATCTG
GTAGACGATATTTCTTTCAACTACGAACCCCAATTGTCCATACACCTATA
TCAGAAGCTTGCTTGCCCCGCTCTGCTTGTCGGAAAACGGTGCCCCTTCC
TGGCGTAGGATTAGCAACCGTCTCGGATGGGTAGACACGTGGAACAGGAA
CAGACCCAAGGCTCAGAACCCGGAGAAAACCAGGAAACACCTGCAGGGGT
GGCTGCCTCGCGAGCACTGGTGAGAATGCAGGACTCTGCTCTGTGTGCTT
GAAGCTCATGATTTCTGCGTCAAATGCGCGCGGTAAGTTGATTCCTTTCC
CGGCTACTAAGTCACTTGCGTGTGCGTCGTTCATCGTCAGCTGGGTGCTG
TACGGGCGTTGGGTGCATGGGGTAGCGGGTGGAGCAGGGCTTGAACGAGG
CCCTCGTTGTGCCCGCGGATACGGATTTCATACGGTGTTGTGTATGGCAA
TGCATTGCTCGTGGCACGTATTTCTTTTACGCCCGCGGTCATGTGTCGAA
CATTCTTCGACGCTAGCTATACCTTCGTTCTAGGATATATGAATGTGTCG
CTGACTAAAGCTTTCCGCCTTTTTCAGCGCCGGGTACTGTCAGGAAGATT
GCTGTTGCTGTTTAGCACCCACAACCACCCAAAATTCCAAATTTCAGAAG
AACGGGGGGCTTTGGTCTTACGTACATGCTCTTTCTAATTCGCTCCACCT
CGTCGTCTGTTGTAGAATCCTCGTGTCAGCTGTTGATGGCTTCTCAAATA
AGCTTATTGAGGAAATTCGATGCACTGACAACGTTCACCTCGGAGCAAGT
TCTTTCTCGTGAAATCAGCTGCTTTGTTTCGAGCGATCACCCTCTTCTTT
CTTTCTCCATCCGCACACATACATATTCTTCACCAACCTGTTCGCGTTAT
GTTCGCCAACACCAAGGTCGGAGGTCAATGAGCTATTGGTGGGATTCGGG
CAGCAGGTCTGCTTCGCAACGAGTCCGTCGTGTTCTGCTTGTGGCATCAG
CGGCCTTTGTCCCTCGGCAGATAGACATGGCGACCTTGCTCTACCACCAA
GCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13486:85..2042+

>mRNA_Ecto-sp13_S_contig13486.2776.1 ID=mRNA_Ecto-sp13_S_contig13486.2776.1|Name=mRNA_Ecto-sp13_S_contig13486.2776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13486:85..2042+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTGGCCTGGGGACGGAACGAAGGGATCTGCGTCGACACCCATGT
GCACAGGATTAGCAACCGTCTCGGATGGGTAGACACGTGGAACAGGAACA
GACCCAAGGCTCAGAACCCGGAGAAAACCAGGAAACACCTGCAGGGGTGG
CTGCCTCGCGAGCACTGGTCGGAGGTCAATGAGCTATTGGTGGGATTCGG
GCAGCAGGTCTGCTTCGCAACGAGTCCGTCGTGTTCTGCTTGTGGCATCA
GCGGCCTTTGTCCCTCGGCAGATAGACATGGCGACCTTGCTCTACCACCA
AGCAAGTGA
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