mRNA_Ecto-sp13_S_contig1348.2770.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A6H5JR03_9PHAE (zf-CHCC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR03_9PHAE) HSP 1 Score: 219 bits (558), Expect = 2.360e-67 Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 1
Query: 1 MAARVSAKKALGLVSGSLAPRGAAVAAVRPASVGLTTAASRPFSQVAPTTTFSKERSKSVYEHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
MAARVSAKKAL L++GS APRG A AVRPAS GLTTAASRPFS++APTTTFSKERSKSVYEHGAHRSDAEARIA+VPVVMVDGPVALCDGGGGALGHPLDYIQL SPDGGPRACQYCG MYQMKTH
Sbjct: 1 MAARVSAKKALDLIAGSFAPRGGA-GAVRPASAGLTTAASRPFSRLAPTTTFSKERSKSVYEHGAHRSDAEARIAEVPVVMVDGPVALCDGGGGALGHPLDYIQLASPDGGPRACQYCGIMYQMKTH 126
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A6G0WCA7_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.350e-20 Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 172 KSVYEH-GAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
K+ YE HRSDAE RIAKVPVV VD VA+CDGGGGALGHPL+YIQL + P+ C+YCG Y+MK H
Sbjct: 40 KTPYEDINRHRSDAELRIAKVPVVEVDTDVAVCDGGGGALGHPLEYIQLNTVSKEPQTCKYCGLRYKMKHH 110
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A4D9CSN1_9STRA (zf-CHCC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSN1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.480e-18 Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 97 VGLTTAASRPFSQVAPTTTFSKERSKSVYEHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
+ + +A SR V P+++ S S Y HGAHRS+AE +A+ PV V G VALCDGGGGA+GHP++YIQL + C+YCG Y+M H
Sbjct: 26 LAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A662WUI1_9STRA (zf-CHCC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUI1_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 9.390e-18 Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 178 VYEH-------GAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGS-PDGGPRACQYCGTMYQMK 375
+Y+H HRSDAE RIAKVPVV V G VA+CDGGGGALGHPL+YIQL + P+ C+YCG Y+MK
Sbjct: 32 IYDHKTPFEDVNRHRSDAELRIAKVPVVEVAGSVAVCDGGGGALGHPLEYIQLDTVKHNTPQTCKYCGVRYKMK 105
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: W4FPE3_9STRA (zf-CHCC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.810e-17 Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 196 HRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
HRSDAE RIA+VPVV VD VA+CDGGGGALGHP++YI L P+ C+YCG Y+ K H
Sbjct: 54 HRSDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDKPQTCKYCGLRYKQKHH 115
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A024TS26_9STRA (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS26_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.810e-17 Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 196 HRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
HRSDAE IA+VPVV VD VA+CDGGGGALGHPL+YI L + P+ C+YCG Y+ K H
Sbjct: 53 HRSDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDKPQTCKYCGLRYKQKPH 114
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: A0A485KN93_9STRA (Aste57867_9463 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN93_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.080e-17 Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 196 HRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTMYQMKTH 381
HRSDAE RIA+VPV+ VD A+CDGGGGALGHPL+YI L P+ C+YCG ++MK H
Sbjct: 56 HRSDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALNIVSDEPQTCKYCGLRFKMKHH 117
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: H3H0X0_PHYRM (zf-CHCC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0X0_PHYRM) HSP 1 Score: 86.7 bits (213), Expect = 5.610e-17 Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 115 ASRPFSQVAPTTTFSKERSKSVYEH-------GAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGS-PDGGPRACQYCGTMYQMK 375
A R + VA T R ++Y+H HRSDAE RIAKVP+V V VA+CDGGGGALGHP++YIQL + P+ C+YCG Y+MK
Sbjct: 18 APRAAAAVANTLHLQSARFSTIYDHRTPFEDVNRHRSDAEQRIAKVPIVEVANSVAVCDGGGGALGHPVEYIQLDTRKHNTPQTCKYCGVRYKMK 112
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: M4BVP6_HYAAE (zf-CHCC domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVP6_HYAAE) HSP 1 Score: 86.7 bits (213), Expect = 5.610e-17 Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 184 EHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGS-PDGGPRACQYCGTMYQMK 375
+ HRSDAE RIAK+P+V V G +A+CDGGGGALGHP++YIQL + P+ C+YCG Y+MK
Sbjct: 48 DRNRHRSDAELRIAKIPIVEVAGTLAVCDGGGGALGHPVEYIQLDTHKQNSPQTCKYCGVRYRMK 112
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Match: F0X2A7_9STRA (Uncharacterized protein AlNc14C931G12647 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A7_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.370e-17 Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 196 HRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDG-GPRACQYCGTMYQMK 375
HRSDAE RIA+VPVV V+G +A+CDGGGGALGHPL+YIQL + + P+ C+YCG Y+MK
Sbjct: 55 HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKMK 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1348.2770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1348.2770.1 >prot_Ecto-sp13_S_contig1348.2770.1 ID=prot_Ecto-sp13_S_contig1348.2770.1|Name=mRNA_Ecto-sp13_S_contig1348.2770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp MAARVSAKKALGLVSGSLAPRGAAVAAVRPASVGLTTAASRPFSQVAPTTback to top mRNA from alignment at Ecto-sp13_S_contig1348:2825..5663+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1348.2770.1 ID=mRNA_Ecto-sp13_S_contig1348.2770.1|Name=mRNA_Ecto-sp13_S_contig1348.2770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2839bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1348:2825..5663+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1348:2825..5663+ >mRNA_Ecto-sp13_S_contig1348.2770.1 ID=mRNA_Ecto-sp13_S_contig1348.2770.1|Name=mRNA_Ecto-sp13_S_contig1348.2770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1348:2825..5663+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |