prot_Ecto-sp13_S_contig13478.2768.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13478.2768.1
Unique Nameprot_Ecto-sp13_S_contig13478.2768.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length231
Homology
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: D8LRE2_ECTSI (DEAD domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE2_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 2.970e-125
Identity = 205/215 (95.35%), Postives = 210/215 (97.67%), Query Frame = 0
Query:   18 MTLPPALQKSLEAEEVQVTPLQASVWSEARAGSDLLIEAKSGPETTTALAVLILDRLVAAISSAEAALPRYARKRTSSFSSLSGLNRIVSSVLRTTSINN-GNSNVKDGESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            MTLPPALQKSLEAEEVQVTPLQASVWSEARAG+DLLIEAKSGPETTTALAVL+LDRLVAAISSAEAALPRYARKRTSSFS LSGLNRIVSSVLRTTS NN GNSNVKDGESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVK+TLLRLGK+SVPNLTIASLVGGIAV+ENAQTLSAGCHVAIGTPGRVKFLIDKGVLV DTGRLL LESAD
Sbjct:    1 MTLPPALQKSLEAEEVQVTPLQASVWSEARAGADLLIEAKSGPETTTALAVLVLDRLVAAISSAEAALPRYARKRTSSFSGLSGLNRIVSSVLRTTSSNNNGNSNVKDGESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVKDTLLRLGKTSVPNLTIASLVGGIAVSENAQTLSAGCHVAIGTPGRVKFLIDKGVLVADTGRLLVLESAD 215          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A6H5L0J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J6_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 8.290e-80
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0
Query:   18 MTLPPALQKSLEAEEVQVTPLQASVWSEARAGSDLLIEAKSGPETTTALAVLILDRLVAAISSAEAALPRYARKRTSSFSSLSGLNRIVSSVLRTTSINNGNSNVKDGESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVK 162
            MTLPPALQKSLE EEVQVTPLQASVWSEARAG+DLLIEAKSGPETTTALAVL+LDRLVAAISSAEAALPRYARKRT+SFSSLSGLNRIVSSVLRTTS NN NSNVKD ESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVK
Sbjct:    1 MTLPPALQKSLEVEEVQVTPLQASVWSEARAGADLLIEAKSGPETTTALAVLVLDRLVAAISSAEAALPRYARKRTTSFSSLSGLNRIVSSVLRTTSGNNSNSNVKDSESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVK 145          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A6H5KKW2_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.050e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0
Query:  163 ETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            ETLLRLGKSSVPNLTIASLVGGIAVAENA+TLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLL LESAD
Sbjct:    2 ETLLRLGKSSVPNLTIASLVGGIAVAENARTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLVLESAD 70          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: UPI000C75EC9F (probable ATP-dependent RNA helicase DDX20 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75EC9F)

HSP 1 Score: 71.6 bits (174), Expect = 9.170e-11
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 0
Query:  144 PQLCALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            P L  LV+   RE+A    E   ++G SS+P++ I+S +GG+ V+E+ +  +  CH+A+GTPGR+K ++D+G+L PDT RL+ L+ AD
Sbjct:  224 PGLQVLVIAPTREIAMQGVEVASQIG-SSLPHVKISSFIGGLPVSED-RVKAQCCHLAVGTPGRLKQILDEGILNPDTVRLVILDEAD 309          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: UPI001C9D4C5E (probable ATP-dependent RNA helicase DDX20 isoform X1 n=2 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D4C5E)

HSP 1 Score: 70.9 bits (172), Expect = 1.750e-10
Identity = 38/91 (41.76%), Postives = 61/91 (67.03%), Query Frame = 0
Query:  141 LLKPQLCALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            +L+PQ  AL+L   RE+A  + + +  +G S +  L +   +GGIA+A++ ++++ GCH+A+G PGRVK LIDKG+L   + RL  L+ AD
Sbjct:   90 ILQPQ--ALILAPTREIAIQIAQVISSIG-SEMEGLKVECFIGGIAMAKDKKSIN-GCHIAVGAPGRVKHLIDKGLLKAGSIRLFVLDEAD 176          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A2H1BUU4_FASHE (RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1BUU4_FASHE)

HSP 1 Score: 69.3 bits (168), Expect = 4.610e-10
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 0
Query:  143 KPQLCALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            +P L ALVL   RE+A   +  L RLG + +P L     VGG+ +A+N + L  GCH+A+GTPGR+++LI+ G +  +  R L L+ AD
Sbjct:  131 RPALQALVLAPTREIALQSQNVLERLG-THLPGLKCRLFVGGLPLADNLKHLP-GCHIAVGTPGRIRYLIETGYMTTENIRHLVLDEAD 217          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A504ZB09_FASGI (RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A504ZB09_FASGI)

HSP 1 Score: 69.3 bits (168), Expect = 5.420e-10
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 0
Query:  143 KPQLCALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            +P L ALVL   RE+A   +  L RLG + +P L     VGG+ +A+N + L  GCH+A+GTPGR+++LI+ G +  +  R L L+ AD
Sbjct:  129 RPALQALVLAPTREIALQSQNVLERLG-THLPGLKCRLFVGGLPLADNLKHLP-GCHIAVGTPGRIRYLIETGYMTTENIRHLVLDEAD 215          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A8J5M572_9STRA (DEAD domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M572_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-9
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  148 ALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            AL+L   RE+A  + E +LRL     P++ I + +GG+ VA++   L+AGCH+ +GTPGRVK L+D+  L     RLL L+  D
Sbjct:  236 ALILAPTREIAVQI-EAVLRLLAQFRPDIVIRTCIGGLPVAQDQMHLAAGCHIVVGTPGRVKALVDQCSLPCSAIRLLVLDEVD 318          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: H3HDI5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDI5_PHYRM)

HSP 1 Score: 67.4 bits (163), Expect = 1.440e-9
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  148 ALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            ALVL   RE+A  ++  L +L +   P L I + +GG+ VA++   L+AGCH+ +GTPGRVK L+D+  L     RLL L+  D
Sbjct:   85 ALVLAPTREIAVQIESVLRQLAQFR-PKLVIRTCIGGLPVAQDQMHLAAGCHIVVGTPGRVKALVDQCSLPCSAIRLLVLDEVD 167          
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Match: A0A329RVJ9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RVJ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.660e-9
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  148 ALVLTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLELESAD 231
            AL+L   RE+A  + E +LRL     P++ I + +GG+ VA++   L+AGCH+ +GTPGRVK L+D+  L     RLL L+  D
Sbjct:   98 ALILAPTREIAVQI-EAVLRLLAQFRPDIVIRTCIGGLPVAQDQMHLAAGCHIVVGTPGRVKALVDQCSLPCSAIRLLVLDEVD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13478.2768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRE2_ECTSI2.970e-12595.35DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5L0J6_9PHAE8.290e-8095.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKW2_9PHAE1.050e-3097.10DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI000C75EC9F9.170e-1143.18probable ATP-dependent RNA helicase DDX20 n=1 Tax=... [more]
UPI001C9D4C5E1.750e-1041.76probable ATP-dependent RNA helicase DDX20 isoform ... [more]
A0A2H1BUU4_FASHE4.610e-1042.70RNA helicase n=1 Tax=Fasciola hepatica TaxID=6192 ... [more]
A0A504ZB09_FASGI5.420e-1042.70RNA helicase n=2 Tax=Fasciola TaxID=6191 RepID=A0A... [more]
A0A8J5M572_9STRA1.090e-942.86DEAD domain-containing protein n=1 Tax=Phytophthor... [more]
H3HDI5_PHYRM1.440e-942.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A329RVJ9_9STRA1.660e-942.86Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 227..231
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 36..217
e-value: 1.1E-6
score: 28.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13478contigEcto-sp13_S_contig13478:3..4257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13478.2768.1mRNA_Ecto-sp13_S_contig13478.2768.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13478 3..4257 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13478.2768.1 ID=prot_Ecto-sp13_S_contig13478.2768.1|Name=mRNA_Ecto-sp13_S_contig13478.2768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
LLRESCVCVCVPRSSAQMTLPPALQKSLEAEEVQVTPLQASVWSEARAGS
DLLIEAKSGPETTTALAVLILDRLVAAISSAEAALPRYARKRTSSFSSLS
GLNRIVSSVLRTTSINNGNSNVKDGESDLSTANGSSGSGGLLKPQLCALV
LTKNREVAAGVKETLLRLGKSSVPNLTIASLVGGIAVAENAQTLSAGCHV
AIGTPGRVKFLIDKGVLVPDTGRLLELESAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase