mRNA_Ecto-sp13_S_contig13474.2767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: A0A6H5KR85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR85_9PHAE) HSP 1 Score: 749 bits (1935), Expect = 9.160e-267 Identity = 400/446 (89.69%), Postives = 412/446 (92.38%), Query Frame = 1
Query: 1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKGAAATAATAPEASQAPGAQHRKTLPDGVDTAAFLECPWLSQEACAAAGRDACIAPFQPEVALLEGAPTSESGKRGGGGXXXXXXXXXXSSLTERVARAMIGRAVDERSLGDLLRVVWALQAIGDPSSAAVPTTSHQPLWAAPGSEAEDALISEASSRLHLAFRAHLGPERDEEDGSSVEEWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEGRADSSKRGSSGATSVSFVDGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDSTPVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQV 1338
MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKG AATAPEASQAPGAQHRKTLPDGVDTAAFLECPWLS EACA AGRDAC+APF+PE ALLEGA S+SGK+GGGG SSLTE+ ARAMIGRAVDERSL DLLRVVWALQAIGDPSSAAVPTTSHQPL AAPGS+A DALISEASSRLHLAFRAHL P+RDEEDGSSVEEWED VRAHRQKLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEG ADSSK+GSS ATS S DGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDST LSLAFVRLYELSTSQPMPFL+DAFKGSYRCYRAAAERIGGGRGARVMARG+GAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAV AAAEVKKGGG AR+AGPALRRLRSWGFLQSLQ+
Sbjct: 1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKGVGGAAATAPEASQAPGAQHRKTLPDGVDTAAFLECPWLSPEACANAGRDACVAPFEPEAALLEGASPSKSGKQGGGGEGSVS-----SSLTEQAARAMIGRAVDERSLDDLLRVVWALQAIGDPSSAAVPTTSHQPLRAAPGSKAADALISEASSRLHLAFRAHLEPDRDEEDGSSVEEWEDTVRAHRQKLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEGCADSSKQGSSAATSASLEDGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDSTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIGGGRGARVMARGEGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVGAAAEVKKGGGMAREAGPALRRLRSWGFLQSLQL 441
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: D8LEQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ5_ECTSI) HSP 1 Score: 732 bits (1889), Expect = 2.360e-260 Identity = 395/450 (87.78%), Postives = 410/450 (91.11%), Query Frame = 1
Query: 1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKGAAATAATAPEASQAPGAQHRKTLPDGVDTAAFLECPWLSQEACAAAGRDACIAPFQPEVALLEGAPTSESGKRGGGGXXXXXXXXXXSSLTERVARAMIGRAVDERSLGDLLRVVWALQ----AIGDPSSAAVPTTSHQPLWAAPGSEAEDALISEASSRLHLAFRAHLGPERDEEDGSSVEEWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEGRADSSKRGSSGATSVSFVDGLDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDSTPVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQV 1338
MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKG GAAA AATA EASQAPGAQHRKTLPDGVDTAAFLECPWLS+EACAAAGRDAC+APF+PEVALLEGA TS+ GKRGGG SSLTE ARAM+GRAVDERSL DLLRVVWALQ A GDPSS A+PTT HQ L AAPGS+A AL+SEASSRLHLAFRAHLGPERDEEDGSSVEEWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALD VETEWATS SVAVEGRADSSK+GSSGATS S VDGLDRMRNHVPLLFPFPRLARRYL+FLL VLQTSD+T LSLAFVRLYELSTSQPMPFL+DAFKGSYRCYRAAAERIGGGRGA VMA+GDGAGSSLPLLRE AELFGVEKPSAYLHAYVYIH+LAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQ+
Sbjct: 1 MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGNGAAAGAATALEASQAPGAQHRKTLPDGVDTAAFLECPWLSREACAAAGRDACVAPFEPEVALLEGAATSKRGKRGGGSKGSGS-----SSLTEEAARAMVGRAVDERSLDDLLRVVWALQEATTAAGDPSSPALPTTCHQALRAAPGSKAAGALVSEASSRLHLAFRAHLGPERDEEDGSSVEEWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALDSVETEWATSNSVAVEGRADSSKQGSSGATSASLVDGLDRMRNHVPLLFPFPRLARRYLAFLLDVLQTSDNTAALSLAFVRLYELSTSQPMPFLHDAFKGSYRCYRAAAERIGGGRGAGVMAKGDGAGSSLPLLREWFAELFGVEKPSAYLHAYVYIHDLAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQL 445
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: A0A7S4MG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MG20_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.820e-12 Identity = 76/244 (31.15%), Postives = 116/244 (47.54%), Query Frame = 1
Query: 544 DALISEASSRLHLAFRAHL-------GPERDEEDGSSVE--EWEDAVRAHRQKLEKAEAWPRLGGALLSFLTSALDCVETEWATSISVAVEGRADSSKRGSSGATSVSFVDGLDRMRNHVPLLFPFPRLARRYLSFLL----AVLQTSDSTPVLSL-AFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLR---ECLAELFGVEKPSAYLHAYVYIHELA 1224
D L+ A H+ FR HL G + D++D + V E ++ + + L+++ W L L FL S+L + ++ +SFV L + +VPLL PFP+LA+ +L L A L TS+ V+ L +F+R+ +L+ +QP PF+ D K SY CY A R G A V S+LP L C+ EL+ ++ S+Y HA+VYI +LA
Sbjct: 161 DRLMLVALRGCHVEFRRHLLGEETKKGGKGDKDDDADVTAPEIDENKPVNPKLLQRSGKWDELRTYLQLFLRSSLHLLSEAKEPAL--------------------LSFV--LKSLSPYVPLLTPFPKLAKSFLQTLSKLWSAPLDTSEEYQVVRLRSFLRVRQLAVTQPFPFVEDCLKSSYLCY---ARRAKFGTAASVH-------SALPTLTFMGNCVVELYSLDYASSYRHAFVYIRQLA 372
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 6.400e-6 Identity = 43/139 (30.94%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 853 LDRMRNHVPLLFPFPRLARRYLSFLLAVL----------------QTSDSTPVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHEL 1221
L R+ ++VPLL PFP LAR +L LL + + ++ V LA++R+ +++ + P PF+ K R Y A A+R AR SL ++ C+ EL+G++ SAY +A++YI +L
Sbjct: 459 LSRLEHYVPLLVPFPGLARGFLKTLLGLWGGAGAEAKSSGGGTEQEGEEAERVRLLAYLRVRQMAAALPFPFVEGCMK---RLYLAFAKR------ARAPPASQSGKVSLRVMEGCVVELYGMDVGSAYQNAFLYIRQL 588
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: A0A485LS79_9STRA (Aste57867_25082 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS79_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.040e-5 Identity = 50/162 (30.86%), Postives = 74/162 (45.68%), Query Frame = 1
Query: 871 HVPLLFPFP--RLARRYLSFLLAVLQTSDSTPVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELA---REAVEA-AAEVKKGGGKARDAGPALRRLRSWGFLQSLQV 1338
H L F P + AR+ L + + S TPV LAFVR+ EL+T P PFL K Y Y + G + G+ C+ EL+G++ S+Y H +VYI +LA R+A+ A +A+ KG + +W F+ L+V
Sbjct: 283 HAYLRFAAPCAQTARKLLKCCVNIWGKSLDTPVCLLAFVRIRELATLVPFPFLETCLKSVYLAYMRNVKFTNGVNFQHHIVMGN-----------CMVELYGLDLVSSYQHVFVYIRQLAMTIRKAIAAPSADTLKG-------------ILTWRFVNCLKV 420
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: W9S139_9ROSA (Uncharacterized protein n=2 Tax=Morus notabilis TaxID=981085 RepID=W9S139_9ROSA) HSP 1 Score: 57.0 bits (136), Expect = 5.960e-5 Identity = 50/163 (30.67%), Postives = 73/163 (44.79%), Query Frame = 1
Query: 853 LDRMRNHVPLLFPFPRLARRYLSFLLAVLQTSDST-PVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELAREAVEAAAEVKKGGGKARDAGPALRRLRSWGFLQSLQV 1338
L R++ L FP L R+Y+ L T PV+SL F+R +L L + FKG Y+ Y + I + + L+ C+ ELFGVE P+AY HA+V+I +LA EA K A R++ W F+ SL++
Sbjct: 286 LRRLKFSSIFLAAFPSLLRKYVKVALHFWGTGGGALPVVSLLFLR--DLCIRLGADCLDECFKGIYKAYVLNCQFINALKLQHIQ-----------FLQNCVIELFGVEIPTAYQHAFVFIRQLAMILREALNTKTK---------EAFRKVYEWKFMNSLEL 426
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Match: A0A024TZA1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZA1_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 9.280e-5 Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 1
Query: 889 PFPRLARRYLSFLLAVLQTSDSTPVLSLAFVRLYELSTSQPMPFLYDAFKGSYRCYRAAAERIGGGRGARVMARGDGAGSSLPLLRECLAELFGVEKPSAYLHAYVYIHELA---REAVEA-AAEVKKGGGKARDAGPALRRLRSWGFLQSLQV 1338
P + +R+ L ++V S T V LAFVR+ EL+T P PFL K Y Y + G + G+ C+ EL+G++ S+Y H ++YI +LA R+A+ A +A+V KG + +W F+ L+V
Sbjct: 285 PCLKTSRKLLKCFVSVWGKSLDTTVCMLAFVRIRELATLVPFPFLETCLKALYLAYMRNVKFTNGVNFQHHIVMGN-----------CMVELYGLDLVSSYQHVFIYIRQLAMTIRKAIAAPSADVLKG-------------ILTWRFVNCLKV 414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13474.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13474.2767.1 >prot_Ecto-sp13_S_contig13474.2767.1 ID=prot_Ecto-sp13_S_contig13474.2767.1|Name=mRNA_Ecto-sp13_S_contig13474.2767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=446bp MGKVNKRQRKFLSKKVLTHRKKGGVRRDNKSKGKGAAATAATAPEASQAPback to top mRNA from alignment at Ecto-sp13_S_contig13474:2407..4352+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13474.2767.1 ID=mRNA_Ecto-sp13_S_contig13474.2767.1|Name=mRNA_Ecto-sp13_S_contig13474.2767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1946bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13474:2407..4352+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13474:2407..4352+ >mRNA_Ecto-sp13_S_contig13474.2767.1 ID=mRNA_Ecto-sp13_S_contig13474.2767.1|Name=mRNA_Ecto-sp13_S_contig13474.2767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1338bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13474:2407..4352+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |