mRNA_Ecto-sp13_S_contig13456.2754.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13456.2754.1
Unique NamemRNA_Ecto-sp13_S_contig13456.2754.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13456.2754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13456contigEcto-sp13_S_contig13456:2216..3501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size885
Hectar predicted targeting categoryother localisation
Exons2
Cds size882
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.6166513-CDS-Ecto-sp13_S_contig13456:2215..23531681462718.6166513-CDS-Ecto-sp13_S_contig13456:2215..2353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13456 2216..2353 +
1681462718.6273746-CDS-Ecto-sp13_S_contig13456:2755..34991681462718.6273746-CDS-Ecto-sp13_S_contig13456:2755..3499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13456 2756..3499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13456.2754.1prot_Ecto-sp13_S_contig13456.2754.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13456 2216..3499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13456.2754.1

>prot_Ecto-sp13_S_contig13456.2754.1 ID=prot_Ecto-sp13_S_contig13456.2754.1|Name=mRNA_Ecto-sp13_S_contig13456.2754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
SCESARCNKSPSFGFPGSKGQFCHKHSEEGMINVRRGRCMVPDCTKSPSH
DPLGAKGQKARFCKDHRIPGRECRHPLGCSRLATHAPPSLPSPASGGGGD
DAVSTAGIPATAAPEDGDGEGGGGGEGGSCKRKRPAPDVGTEASVGPSAR
DGGESGSGTVAACGVSAAATAEDGAAKVAMDVDVGEGVGASASSCGTGNG
VAAAAETAVTIGPINGSGSAAATDVSVAMDVDNGRPENGTAVVGGAASAA
RFDDVMAAARLLLGDVERGFHQQQQQQQSQPQEQKQRPQEQQQQ
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mRNA from alignment at Ecto-sp13_S_contig13456:2216..3501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13456.2754.1 ID=mRNA_Ecto-sp13_S_contig13456.2754.1|Name=mRNA_Ecto-sp13_S_contig13456.2754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1286bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13456:2216..3501+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCGAAAGCGCGAGGTGCAACAAGAGCCCATCTTTTGGCTTTCCGGG
ATCCAAGGGGCAATTCTGTCATAAGCACAGCGAGGAGGGGATGATCAACG
TCAGACGTGGAAGATGCATGGTCCCGGACTGTACCAAGGTGAGAGGGGGT
GGCTCAATATTTGTGGGCGTGAATTCATTTGTATTAGAAGTGTGTTTCAT
TGCATGTTTTTAGCAAGAACTGATACCAATTTATCTCTATCCGCAGATAC
GAGCCCAGGATAAAGCAGCAACAAGAGTGTTATGTGCCCTGCCTGGCGTG
TTGATTGTCTTTGCGCCGAACCACCGTGAGGACTTTTTTATGGTATGTAT
ACATCAAGAGCACCCAGAAACTATGCATTGTGTCACAAGTTTTGTTGTGT
GTCTGTGGTTTTGTGTTTTTGTCTTCCCCTTTCCATCGCTAGTGCTCCGT
CGCCTCCATCCGCCTCAACACCCTGCCTTTCCACCACGCTGTTGCCACCT
GTTGCTGGACCCCCCCCATGGTGCTCGTCTCTGCACCCAGTCTCCGAGTC
ACGACCCGCTGGGGGCCAAGGGCCAGAAGGCGCGCTTCTGTAAGGACCAC
CGCATTCCCGGTAGGGAATGCCGGCATCCATTAGGGTGCAGCCGTCTGGC
CACGCACGCGCCGCCGTCGTTGCCGTCCCCCGCTAGCGGCGGCGGCGGCG
ACGATGCTGTCTCTACCGCGGGAATCCCCGCTACCGCTGCCCCCGAAGAC
GGGGACGGGGAGGGTGGCGGCGGCGGGGAGGGTGGAAGCTGCAAGAGGAA
GCGACCCGCTCCGGACGTTGGCACGGAGGCTTCGGTAGGCCCTAGCGCTA
GGGACGGTGGCGAGAGCGGGAGTGGTACCGTTGCCGCCTGTGGGGTGTCG
GCCGCGGCGACGGCAGAGGACGGTGCTGCTAAGGTGGCAATGGATGTTGA
CGTTGGGGAGGGGGTGGGTGCGTCCGCTAGTTCTTGCGGTACGGGCAATG
GAGTGGCGGCTGCAGCGGAAACGGCGGTTACCATTGGGCCTATCAACGGT
AGCGGCAGTGCTGCTGCTACCGACGTGTCTGTTGCCATGGACGTGGACAA
CGGCCGACCGGAGAATGGCACGGCGGTTGTTGGCGGTGCGGCAAGTGCAG
CCCGCTTCGACGACGTGATGGCGGCGGCTCGCTTGCTTCTCGGAGACGTG
GAGCGCGGTTTCCACCAGCAGCAGCAACAGCAACAATCACAGCCGCAGGA
ACAGAAGCAGCGACCGCAGGAACAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13456:2216..3501+

>mRNA_Ecto-sp13_S_contig13456.2754.1 ID=mRNA_Ecto-sp13_S_contig13456.2754.1|Name=mRNA_Ecto-sp13_S_contig13456.2754.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13456:2216..3501+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTGCGAAAGCGCGAGGTGCAACAAGAGCCCATCTTTTGGCTTTCCGGG
ATCCAAGGGGCAATTCTGTCATAAGCACAGCGAGGAGGGGATGATCAACG
TCAGACGTGGAAGATGCATGGTCCCGGACTGTACCAAGTCTCCGAGTCAC
GACCCGCTGGGGGCCAAGGGCCAGAAGGCGCGCTTCTGTAAGGACCACCG
CATTCCCGGTAGGGAATGCCGGCATCCATTAGGGTGCAGCCGTCTGGCCA
CGCACGCGCCGCCGTCGTTGCCGTCCCCCGCTAGCGGCGGCGGCGGCGAC
GATGCTGTCTCTACCGCGGGAATCCCCGCTACCGCTGCCCCCGAAGACGG
GGACGGGGAGGGTGGCGGCGGCGGGGAGGGTGGAAGCTGCAAGAGGAAGC
GACCCGCTCCGGACGTTGGCACGGAGGCTTCGGTAGGCCCTAGCGCTAGG
GACGGTGGCGAGAGCGGGAGTGGTACCGTTGCCGCCTGTGGGGTGTCGGC
CGCGGCGACGGCAGAGGACGGTGCTGCTAAGGTGGCAATGGATGTTGACG
TTGGGGAGGGGGTGGGTGCGTCCGCTAGTTCTTGCGGTACGGGCAATGGA
GTGGCGGCTGCAGCGGAAACGGCGGTTACCATTGGGCCTATCAACGGTAG
CGGCAGTGCTGCTGCTACCGACGTGTCTGTTGCCATGGACGTGGACAACG
GCCGACCGGAGAATGGCACGGCGGTTGTTGGCGGTGCGGCAAGTGCAGCC
CGCTTCGACGACGTGATGGCGGCGGCTCGCTTGCTTCTCGGAGACGTGGA
GCGCGGTTTCCACCAGCAGCAGCAACAGCAACAATCACAGCCGCAGGAAC
AGAAGCAGCGACCGCAGGAACAGCAGCAGCAG
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