prot_Ecto-sp13_S_contig13454.2752.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13454.2752.1
Unique Nameprot_Ecto-sp13_S_contig13454.2752.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length170
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.530e-43
Identity = 87/135 (64.44%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:   32 SAVYWNNSAMDPTKTLNIAGCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNKAFFXXXXXXXXXXXXXXXXXXXXXXXXEYGGGIVQLEAGFMDIQNSIFDGNVAHNGGGALAVATASRADRF 166
            S   W     DPTK LNI GCLFSENTI GGDEG GED EVFGGTVVAKWG+VTID+TMFYNNK                           +YGGGI+Q+EAGFMDIQNSIFDGNVA  GGGALAVATASRADR+
Sbjct:  328 STFLWIGDLQDPTKMLNITGCLFSENTIDGGDEGTGEDGEVFGGTVVAKWGVVTIDDTMFYNNKGLLVEGANLTVTNTQFNYNTAS-----QYGGGILQVEAGFMDIQNSIFDGNVADYGGGALAVATASRADRY 457
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BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.440e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0 
Query:   39 SAMDPTKTLNIAGCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNK 95
            S  DPTKTLNI GCLFSENTI GGDEG GED E+FGGTVVAKWG+VTID+TMFYNNK
Sbjct:  124 SESDPTKTLNITGCLFSENTIDGGDEGDGEDGELFGGTVVAKWGVVTIDDTMFYNNK 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC0_9PHAE4.530e-4364.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U0_ECTSI1.440e-2184.21REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 113..128
e-value: 0.0029
score: 15.4
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 32..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13454contigEcto-sp13_S_contig13454:1681..2949 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13454.2752.1mRNA_Ecto-sp13_S_contig13454.2752.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13454 1681..2949 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13454.2752.1 ID=prot_Ecto-sp13_S_contig13454.2752.1|Name=mRNA_Ecto-sp13_S_contig13454.2752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
ASDCPDGDSACDEYSDSSSENSTSGYQRRSGSAVYWNNSAMDPTKTLNIA
GCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNKAFFGA
GLLVEGANLTVTNTQFTNNTAFEYGGGIVQLEAGFMDIQNSIFDGNVAHN
GGGALAVATASRADRFVWK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence