mRNA_Ecto-sp13_S_contig13454.2752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13454.2752.1
Unique NamemRNA_Ecto-sp13_S_contig13454.2752.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.530e-43
Identity = 87/135 (64.44%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:   94 SAVYWNNSAMDPTKTLNIAGCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNKAFFXXXXXXXXXXXXXXXXXXXXXXXXEYGGGIVQLEAGFMDIQNSIFDGNVAHNGGGALAVATASRADRF 498
            S   W     DPTK LNI GCLFSENTI GGDEG GED EVFGGTVVAKWG+VTID+TMFYNNK                           +YGGGI+Q+EAGFMDIQNSIFDGNVA  GGGALAVATASRADR+
Sbjct:  328 STFLWIGDLQDPTKMLNITGCLFSENTIDGGDEGTGEDGEVFGGTVVAKWGVVTIDDTMFYNNKGLLVEGANLTVTNTQFNYNTAS-----QYGGGILQVEAGFMDIQNSIFDGNVADYGGGALAVATASRADRY 457
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BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.440e-21
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:  115 SAMDPTKTLNIAGCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNK 285
            S  DPTKTLNI GCLFSENTI GGDEG GED E+FGGTVVAKWG+VTID+TMFYNNK
Sbjct:  124 SESDPTKTLNITGCLFSENTIDGGDEGDGEDGELFGGTVVAKWGVVTIDDTMFYNNK 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13454.2752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC0_9PHAE4.530e-4364.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U0_ECTSI1.440e-2184.21REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13454contigEcto-sp13_S_contig13454:1681..2949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size512
Hectar predicted targeting categoryother localisation
Exons3
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.556587-CDS-Ecto-sp13_S_contig13454:1680..19041681462718.556587-CDS-Ecto-sp13_S_contig13454:1680..1904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 1681..1904 -
1681462718.5682096-CDS-Ecto-sp13_S_contig13454:2215..23781681462718.5682096-CDS-Ecto-sp13_S_contig13454:2215..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 2216..2378 -
1681462718.5844126-CDS-Ecto-sp13_S_contig13454:2826..29491681462718.5844126-CDS-Ecto-sp13_S_contig13454:2826..2949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 2827..2949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13454.2752.1prot_Ecto-sp13_S_contig13454.2752.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13454 1681..2949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13454.2752.1

>prot_Ecto-sp13_S_contig13454.2752.1 ID=prot_Ecto-sp13_S_contig13454.2752.1|Name=mRNA_Ecto-sp13_S_contig13454.2752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
ASDCPDGDSACDEYSDSSSENSTSGYQRRSGSAVYWNNSAMDPTKTLNIA
GCLFSENTIYGGDEGVGEDEEVFGGTVVAKWGMVTIDETMFYNNKAFFGA
GLLVEGANLTVTNTQFTNNTAFEYGGGIVQLEAGFMDIQNSIFDGNVAHN
GGGALAVATASRADRFVWK*
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mRNA from alignment at Ecto-sp13_S_contig13454:1681..2949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13454.2752.1 ID=mRNA_Ecto-sp13_S_contig13454.2752.1|Name=mRNA_Ecto-sp13_S_contig13454.2752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:1681..2949- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCAGATTGCCCGGACGGAGATTCCGCTTGCGACGAATATTCGGATTC
CTCTAGCGAGAATTCGACCAGCGGCTACCAACGCCGATCTGGGTCGGCGG
TTTACTGGAACAATAGCGCCATGGTAAGCTTGAGGGTGCATCGTGCCATT
TGTAGTGTTCTACCAGCCGTAGAACGGCGTCAGTTCCTGGTTTTCTTCGA
TGTTTCCTTCGAAATGTCATGTCCAGGTAAGGTGTGCACACGAGCCTTCT
GAAGAATCTGCTTGACATTCCCCCCCCCCCAAGAAGAACATCGCTGTGTA
GACCTCTGCCACATGTTGTGCACAGAAGCAGATCGCCACGGCGGTCACTA
GTCATGCCATATTAGCATCGCGGATAGAGAAGCGGTCAGACATCGTACAT
CCAGCAGGCGGAGTGGTACCGAGATGATGTCTGTCTTGCGTATGTAGACA
TTTAGGGCACCTCAAAGTATACACCCGAGCAGCGTAGCTCTGGTGCTCAA
CCAACGTGTCTTAGGCGGGTGCCGGTGTTCTCATCGTGACGAGTCCCTTC
TTATCGATTGGATATTTGCAGGACCCCACCAAAACGCTGAACATCGCGGG
TTGTCTCTTTTCGGAGAACACTATCTATGGGGGAGATGAAGGAGTTGGGG
AAGATGAAGAAGTCTTCGGGGGCACCGTGGTGGCAAAATGGGGAATGGTG
ACTATCGACGAGACCATGTTCTACAACAATAAAGGTAAACAACAGCAGTG
GATACATTTCTGATTTCCTCGACCACCCCCGCTCCGTAGATACCGGTTCG
GCCAAGAATCCCTTGCTTGTTGAACGCAGACACTATCTTCTCCGTTAAAA
GGCTCAATGTGGGTGTTCCACCCCACCACGCAATACTATACTCCCGGAAC
CATAGTCGGCTCAGCATGTACTATTTTCCTATGTTTGACGGCGAAGGAGA
ACGACGCAGAGATGAGGAGTTTTGACTGAGGTCGGTGCGTCAACCAAATG
CTTCCCCTCGCTCAAACACCATTTTGCGCTGCTTGCTCCGATCAGCGTTT
TTCGGCGCAGGTCTGCTGGTTGAGGGGGCCAACCTCACGGTTACAAACAC
GCAGTTTACCAACAACACCGCCTTCGAGTACGGGGGAGGGATAGTGCAAT
TGGAGGCCGGTTTTATGGACATTCAGAATTCGATCTTTGACGGCAACGTC
GCTCACAACGGCGGGGGGGCACTGGCCGTTGCCACGGCATCTCGAGCAGA
TAGGTTCGTCTGGAAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13454:1681..2949-

>mRNA_Ecto-sp13_S_contig13454.2752.1 ID=mRNA_Ecto-sp13_S_contig13454.2752.1|Name=mRNA_Ecto-sp13_S_contig13454.2752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:1681..2949- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCAGATTGCCCGGACGGAGATTCCGCTTGCGACGAATATTCGGATTC
CTCTAGCGAGAATTCGACCAGCGGCTACCAACGCCGATCTGGGTCGGCGG
TTTACTGGAACAATAGCGCCATGGACCCCACCAAAACGCTGAACATCGCG
GGTTGTCTCTTTTCGGAGAACACTATCTATGGGGGAGATGAAGGAGTTGG
GGAAGATGAAGAAGTCTTCGGGGGCACCGTGGTGGCAAAATGGGGAATGG
TGACTATCGACGAGACCATGTTCTACAACAATAAAGCGTTTTTCGGCGCA
GGTCTGCTGGTTGAGGGGGCCAACCTCACGGTTACAAACACGCAGTTTAC
CAACAACACCGCCTTCGAGTACGGGGGAGGGATAGTGCAATTGGAGGCCG
GTTTTATGGACATTCAGAATTCGATCTTTGACGGCAACGTCGCTCACAAC
GGCGGGGGGGCACTGGCCGTTGCCACGGCATCTCGAGCAGATAGGTTCGT
CTGGAAATAA
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