prot_Ecto-sp13_S_contig1344.2742.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1344.2742.1
Unique Nameprot_Ecto-sp13_S_contig1344.2742.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length376
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1344.2742.1 vs. uniprot
Match: D7FHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS0_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 6.310e-115
Identity = 175/208 (84.13%), Postives = 185/208 (88.94%), Query Frame = 0 
Query:    2 LVLAVPAGSRRFARCMGIAMRVLLACSVFFHLVAACLAASVYVHLRIHHPHHDGSGFPAILLGPTFVLAWGAILIALVEISLLRISHPESRGTGPHQEPPFHLRHIYTRNHRKSRFRVLFGIACRIVAFDVTILVKYVDASGLTSPGLQSIPLILCASSVISLVWSASHKQATKGKCCILGLGVMASLFYLQTRFTTGMLGWAHIDEE 209
            LVLAVPAGSR+ AR  G AMRVLLACSVFF LVAACLAASVYVHLRIH P+HDGSGFPA+LLGPTFVLAWGAIL+ALVEISLLRISHPESRGTGPHQEPPF+LRHIYTRNH KSRF VL GI   IV FDVT LV YVDASGL+SPGLQSIPL+ C SSVI LVWSASHKQATKGKC +LGLGV+ASLFY QTRF  GMLGWA+ DEE
Sbjct:  106 LVLAVPAGSRKCARRTGNAMRVLLACSVFFQLVAACLAASVYVHLRIHRPYHDGSGFPAMLLGPTFVLAWGAILVALVEISLLRISHPESRGTGPHQEPPFYLRHIYTRNHPKSRFWVLLGIGSLIVVFDVTTLVNYVDASGLSSPGLQSIPLVFCVSSVIFLVWSASHKQATKGKCFVLGLGVLASLFYPQTRFVMGMLGWANADEE 313
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BLAST of mRNA_Ecto-sp13_S_contig1344.2742.1 vs. uniprot
Match: A0A6H5K3M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M8_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.490e-71
Identity = 124/161 (77.02%), Postives = 131/161 (81.37%), Query Frame = 0 
Query:    2 LVLAVPAGSRRFARCMGIAMRVLLACSVFFHLVAACLAASVYVHLRIHHPHHDG----------------SGFPAILLGPTFVLAWGAILIALVEISLLRISHPESRGTGPHQEPPFHLRHIYTRNHRKSRFRVLFGIACRIVAFDVTILVKYVDASGLTS 146
            L+LAVPAGSRRFAR MGI M+VLLACSVFF LVAACLAASVYVHL+IH P+HDG                SGFPA+LLGPTF LAWG+ LIALVEISLLRISHPESRGTGPHQEPPFHLR+IY RNH KSRF VLFGI   IVAFDVT LV YVDASGLTS
Sbjct:   27 LLLAVPAGSRRFARRMGIVMKVLLACSVFFQLVAACLAASVYVHLKIHIPYHDGRTSVRVASPTPTAYTGSGFPAMLLGPTFALAWGSTLIALVEISLLRISHPESRGTGPHQEPPFHLRNIYNRNHPKSRFWVLFGIGSLIVAFDVTTLVNYVDASGLTS 187
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BLAST of mRNA_Ecto-sp13_S_contig1344.2742.1 vs. uniprot
Match: D8LH50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH50_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.780e-21
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 0 
Query:   76 IALVEISLLRISHPESRGTGPHQEPPFHLRHIYTRNHRKSRFRVLFGIACRIVAFDVTILVKYVDASGLTS 146
            +ALVEI LLRISHPESRG GP QEPPF+LRHIYTRNH KSR  V+FGI   +VA +VT +V Y D  G+ S
Sbjct:    1 MALVEIFLLRISHPESRGNGPQQEPPFYLRHIYTRNHPKSRVLVVFGIGSLVVASEVTTVVNYADGPGVMS 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1344.2742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHS0_ECTSI6.310e-11584.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3M8_9PHAE1.490e-7177.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH50_ECTSI3.780e-2167.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 23..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 140..150
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..84
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 169..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 247..375
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 207..225
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 149..168
NoneNo IPR availableTMHMMTMhelixcoord: 225..246
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 180..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1344contigEcto-sp13_S_contig1344:4881..7443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1344.2742.1mRNA_Ecto-sp13_S_contig1344.2742.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1344 1605..7802 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1344.2742.1 ID=prot_Ecto-sp13_S_contig1344.2742.1|Name=mRNA_Ecto-sp13_S_contig1344.2742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MLVLAVPAGSRRFARCMGIAMRVLLACSVFFHLVAACLAASVYVHLRIHH
PHHDGSGFPAILLGPTFVLAWGAILIALVEISLLRISHPESRGTGPHQEP
PFHLRHIYTRNHRKSRFRVLFGIACRIVAFDVTILVKYVDASGLTSPGLQ
SIPLILCASSVISLVWSASHKQATKGKCCILGLGVMASLFYLQTRFTTGM
LGWAHIDEEVRDSLRDSLRDGMRDLWLWPLVLNLFYLGGLVFIWVIDIIA
FCKYRRGEQDLPRHHERSLQPREDRFRHWRSTATPAKATTRPPTGVHAAA
AAAAAAAPGTSGERTTSRLSVGGDLALLTTVGGHEQLGSSIVWSAAPVGQ
HIEAAPVSASVSVTRAAVSPRLPAQ*
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