prot_Ecto-sp13_S_contig13431.2740.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13431.2740.1
Unique Nameprot_Ecto-sp13_S_contig13431.2740.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Match: A0A6H5KC31_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC31_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.300e-56
Identity = 107/123 (86.99%), Postives = 111/123 (90.24%), Query Frame = 0 
Query:    1 PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDGVFVGDHECRSGSGYVASALSAAAAVSDEGREGEADGGGGERVGDDPGWLLRVEGYTVAQPEQQLGLGDDYSSE 123
            PREG+HSGG+YTPPVV TGGGEAE RSLLA+AGG SSGGHPAGRSAS DGV VGDHEC SGSGYVASALS  A +SDEGREG ADGGGGERVGDDP WLLRVEGYTVAQPEQQLGLGDD SSE
Sbjct:  301 PREGNHSGGDYTPPVVGTGGGEAEERSLLAVAGGTSSGGHPAGRSASEDGVSVGDHECSSGSGYVASALSLVA-LSDEGREGAADGGGGERVGDDPDWLLRVEGYTVAQPEQQLGLGDDCSSE 422
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BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 9.050e-53
Identity = 106/132 (80.30%), Postives = 108/132 (81.82%), Query Frame = 0 
Query:    1 PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDGVFVGDHECRSGSGYVASALSAAAAVS---------DEGREGEADGGGGERVGDDPGWLLRVEGYTVAQPEQQLGLGDDYSSE 123
            PREGHHSG +YTPPVV TGGGEAEGRSLLA+AGG SSGGHPAGRSAS DGVFVGD EC  GSGYVASALSA              DEGRE EADGGGGER GDDPGWLLRVEGYTVAQPEQQLGLGDD SSE
Sbjct:  589 PREGHHSG-DYTPPVVGTGGGEAEGRSLLAVAGGTSSGGHPAGRSASEDGVFVGDRECSRGSGYVASALSAXXXXXXXXXXXXXXDEGREDEADGGGGEREGDDPGWLLRVEGYTVAQPEQQLGLGDDCSSE 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC31_9PHAE2.300e-5686.99ABC transporter domain-containing protein n=1 Tax=... [more]
D7FQX4_ECTSI9.050e-5380.30ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13431contigEcto-sp13_S_contig13431:938..1306 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13431.2740.1mRNA_Ecto-sp13_S_contig13431.2740.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13431 938..1306 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13431.2740.1 ID=prot_Ecto-sp13_S_contig13431.2740.1|Name=mRNA_Ecto-sp13_S_contig13431.2740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDG
VFVGDHECRSGSGYVASALSAAAAVSDEGREGEADGGGGERVGDDPGWLL
RVEGYTVAQPEQQLGLGDDYSSE
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