mRNA_Ecto-sp13_S_contig13431.2740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13431.2740.1
Unique NamemRNA_Ecto-sp13_S_contig13431.2740.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Match: A0A6H5KC31_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC31_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.300e-56
Identity = 107/123 (86.99%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:    1 PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDGVFVGDHECRSGSGYVASALSAAAAVSDEGREGEADGGGGERVGDDPGWLLRVEGYTVAQPEQQLGLGDDYSSE 369
            PREG+HSGG+YTPPVV TGGGEAE RSLLA+AGG SSGGHPAGRSAS DGV VGDHEC SGSGYVASALS  A +SDEGREG ADGGGGERVGDDP WLLRVEGYTVAQPEQQLGLGDD SSE
Sbjct:  301 PREGNHSGGDYTPPVVGTGGGEAEERSLLAVAGGTSSGGHPAGRSASEDGVSVGDHECSSGSGYVASALSLVA-LSDEGREGAADGGGGERVGDDPDWLLRVEGYTVAQPEQQLGLGDDCSSE 422
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BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 9.050e-53
Identity = 106/132 (80.30%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:    1 PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDGVFVGDHECRSGSGYVASALSAAAAVS---------DEGREGEADGGGGERVGDDPGWLLRVEGYTVAQPEQQLGLGDDYSSE 369
            PREGHHSG +YTPPVV TGGGEAEGRSLLA+AGG SSGGHPAGRSAS DGVFVGD EC  GSGYVASALSA              DEGRE EADGGGGER GDDPGWLLRVEGYTVAQPEQQLGLGDD SSE
Sbjct:  589 PREGHHSG-DYTPPVVGTGGGEAEGRSLLAVAGGTSSGGHPAGRSASEDGVFVGDRECSRGSGYVASALSAXXXXXXXXXXXXXXDEGREDEADGGGGEREGDDPGWLLRVEGYTVAQPEQQLGLGDDCSSE 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13431.2740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC31_9PHAE2.300e-5686.99ABC transporter domain-containing protein n=1 Tax=... [more]
D7FQX4_ECTSI9.050e-5380.30ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13431contigEcto-sp13_S_contig13431:938..1306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.0
Seed ortholog evalue3.2e-46
Seed eggNOG ortholog2880.D7FQX4
Preferred nameABCD2
Model size370
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
Exons1
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759,KOG0064@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-02_003270.1
Cds size369
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.6094058-CDS-Ecto-sp13_S_contig13431:937..13061681462717.6094058-CDS-Ecto-sp13_S_contig13431:937..1306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13431 938..1306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13431.2740.1prot_Ecto-sp13_S_contig13431.2740.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13431 938..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13431.2740.1

>prot_Ecto-sp13_S_contig13431.2740.1 ID=prot_Ecto-sp13_S_contig13431.2740.1|Name=mRNA_Ecto-sp13_S_contig13431.2740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
PREGHHSGGNYTPPVVDTGGGEAEGRSLLALAGGASSGGHPAGRSASGDG
VFVGDHECRSGSGYVASALSAAAAVSDEGREGEADGGGGERVGDDPGWLL
RVEGYTVAQPEQQLGLGDDYSSE
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mRNA from alignment at Ecto-sp13_S_contig13431:938..1306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13431.2740.1 ID=mRNA_Ecto-sp13_S_contig13431.2740.1|Name=mRNA_Ecto-sp13_S_contig13431.2740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13431:938..1306+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACGAGAAGGTCACCATTCGGGGGGGAATTACACTCCGCCCGTCGTCGA
CACCGGCGGCGGCGAGGCAGAGGGACGGAGCCTCCTTGCCCTCGCCGGAG
GGGCGTCTTCGGGCGGACACCCCGCGGGGCGTTCCGCTAGCGGGGATGGC
GTTTTCGTCGGTGATCATGAGTGTAGAAGTGGTTCCGGCTACGTCGCTTC
CGCGCTGTCGGCGGCGGCGGCGGTTTCCGACGAGGGGAGGGAAGGCGAAG
CCGACGGGGGCGGCGGCGAGCGAGTGGGTGATGACCCCGGCTGGCTGCTG
AGGGTCGAAGGGTACACCGTGGCCCAACCGGAGCAGCAGCTTGGTCTCGG
CGACGATTACAGCAGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13431:938..1306+

>mRNA_Ecto-sp13_S_contig13431.2740.1 ID=mRNA_Ecto-sp13_S_contig13431.2740.1|Name=mRNA_Ecto-sp13_S_contig13431.2740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13431:938..1306+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACGAGAAGGTCACCATTCGGGGGGGAATTACACTCCGCCCGTCGTCGA
CACCGGCGGCGGCGAGGCAGAGGGACGGAGCCTCCTTGCCCTCGCCGGAG
GGGCGTCTTCGGGCGGACACCCCGCGGGGCGTTCCGCTAGCGGGGATGGC
GTTTTCGTCGGTGATCATGAGTGTAGAAGTGGTTCCGGCTACGTCGCTTC
CGCGCTGTCGGCGGCGGCGGCGGTTTCCGACGAGGGGAGGGAAGGCGAAG
CCGACGGGGGCGGCGGCGAGCGAGTGGGTGATGACCCCGGCTGGCTGCTG
AGGGTCGAAGGGTACACCGTGGCCCAACCGGAGCAGCAGCTTGGTCTCGG
CGACGATTACAGCAGCGAG
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