mRNA_Ecto-sp13_S_contig13430.2739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13430.2739.1
Unique NamemRNA_Ecto-sp13_S_contig13430.2739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: A0A6H5KE69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE69_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.160e-29
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:  140 MRETGTVPLNSGGNNSDGRQGQRTCSRPTLFGMRRSCSECGRKKKRCDGRQPCG 301
            MRETGTVP NSGGNNSDGRQGQ TCSRPTLFGMRRSCSECGRKKKRCDG+QPCG
Sbjct:    1 MRETGTVPPNSGGNNSDGRQGQGTCSRPTLFGMRRSCSECGRKKKRCDGQQPCG 54
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.230e-15
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:  140 MRETGTVPLNSGGNNSDGRQGQRTCSRPTLFGMRRSCSECGRKKKR--CDGRQPC 298
            MRET TV  NSGGN+S GRQG  TC RPTLFGMRRSCSECGRKKKR     R PC
Sbjct:    1 MRETSTVQPNSGGNSSYGRQGHGTCLRPTLFGMRRSCSECGRKKKRRCVKSRSPC 55
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: A0A6H5K9L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-13
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:  158 VPLNSGGNNSDGRQGQRTCSRPTLFGMRRSCSECGRKKKRCDGRQPCG 301
            +P+NSGG+N DGRQ  R   RPTLFGMRRSC E GR++K CDG+QPCG
Sbjct:    7 MPVNSGGSNRDGRQ--RLHLRPTLFGMRRSCLEYGRRRKGCDGQQPCG 52
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-11
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  155 TVPLNSGGNNSDGRQGQRTCSRPTLFGMRRSCSECGRKKKRCDGRQPC 298
            T  L   GN++DG +G  TC RPTL GMRRSC+ECGRKKKRCDG+QPC
Sbjct:    4 TSALRLKGNDNDGEKG--TCLRPTLPGMRRSCTECGRKKKRCDGQQPC 49
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.250e-10
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  182 NSDGRQGQRTCSRPTLFGMRRSCSECGRKKKRCDGRQPCG 301
            NSDGR+   TC  PTL GMRRSCSECGRKKK CDGR+PCG
Sbjct:    7 NSDGRK--ETCLPPTLPGMRRSCSECGRKKKSCDGRRPCG 44
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BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-9
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  140 MRETGTVPLNSGGNNSDGRQGQRTCSRPTLFGMRRSCSECGRKKKRCDGRQPC 298
            M  +GT P  S GNN DG     TC RP L G+RRSCSECGRKKKRCDG++PC
Sbjct:    1 MDTSGTEP--SKGNNDDGTA---TCLRPILPGIRRSCSECGRKKKRCDGQRPC 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13430.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KE69_9PHAE1.160e-2994.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU08_ECTSI7.230e-1574.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L4_9PHAE1.700e-1368.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYW4_9PHAE3.310e-1168.75Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU13_ECTSI5.250e-1077.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI1.370e-964.15Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13430contigEcto-sp13_S_contig13430:1528..1831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.5757308-UTR-Ecto-sp13_S_contig13430:1527..16061681462717.5757308-UTR-Ecto-sp13_S_contig13430:1527..1606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13430 1528..1606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.5844462-CDS-Ecto-sp13_S_contig13430:1606..18311681462717.5844462-CDS-Ecto-sp13_S_contig13430:1606..1831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13430 1607..1831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13430.2739.1prot_Ecto-sp13_S_contig13430.2739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13430 1607..1831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13430.2739.1

>prot_Ecto-sp13_S_contig13430.2739.1 ID=prot_Ecto-sp13_S_contig13430.2739.1|Name=mRNA_Ecto-sp13_S_contig13430.2739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MRRDTKHLRTVCPTITALVVMRETGTVPLNSGGNNSDGRQGQRTCSRPTL
FGMRRSCSECGRKKKRCDGRQPCG*
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mRNA from alignment at Ecto-sp13_S_contig13430:1528..1831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13430.2739.1 ID=mRNA_Ecto-sp13_S_contig13430.2739.1|Name=mRNA_Ecto-sp13_S_contig13430.2739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13430:1528..1831+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGCCGCAAAACGCTAGCTCTCCCATAGGTCTCTGTCGCCCCCTTTC
TTGCTCCCTTCCTGTGCCTGCCCCTTTGCATGCGCAGAGACACGAAACAC
CTGAGAACCGTCTGTCCCACAATTACGGCACTGGTCGTTATGAGAGAAAC
CGGTACGGTGCCACTCAATTCCGGCGGGAACAACAGCGATGGTCGGCAAG
GGCAACGAACTTGCTCGCGGCCAACTCTGTTTGGAATGCGGAGGAGCTGC
TCAGAGTGCGGACGGAAAAAGAAGAGATGTGATGGTCGACAGCCTTGCGG
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13430:1528..1831+

>mRNA_Ecto-sp13_S_contig13430.2739.1 ID=mRNA_Ecto-sp13_S_contig13430.2739.1|Name=mRNA_Ecto-sp13_S_contig13430.2739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13430:1528..1831+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGAGACACGAAACACCTGAGAACCGTCTGTCCCACAATTACGGC
ACTGGTCGTTATGAGAGAAACCGGTACGGTGCCACTCAATTCCGGCGGGA
ACAACAGCGATGGTCGGCAAGGGCAACGAACTTGCTCGCGGCCAACTCTG
TTTGGAATGCGGAGGAGCTGCTCAGAGTGCGGACGGAAAAAGAAGAGATG
TGATGGTCGACAGCCTTGCGGGTGA
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