mRNA_Ecto-sp13_S_contig13429.2738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13429.2738.1
Unique NamemRNA_Ecto-sp13_S_contig13429.2738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 4.570e-65
Identity = 110/128 (85.94%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNATTGLNVD+SDFLKDVKDGLVEELVDRTLDE+ALLRAV  +D I AD+QRDTRASYEALKVFMENE+RRRRKNARDG GYIDFR+EM+RVT+GRGGMVWVRN+NVQKWL S +TAAPTR
Sbjct:  394 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLESRSTAAPTR 521
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.490e-61
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNATTGL+VD+S+FLKDVKDGLV ELVDRTLDE ALLRAVS DDDI A+LQRDTRASYEALK FM+ E+  R KNARDG GYIDFRDEM+RVTDGRGGMVWVRN+NVQKWL SH+ AAPTR
Sbjct:  170 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 296
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.070e-59
Identity = 105/128 (82.03%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNA TGLNVD+SDFLKDVKDGLVEELVDRTLDE+ALLRAVS DD + ADLQRDTRASYEALKVFMENE+RRRRKNARDG GYI+FR+EM+R+ DGRGG VWVRNENV+KWL S+++ AP+R
Sbjct:  905 VVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPAPSR 1032
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 7.780e-59
Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNATTGL+VD+S+FLKDVKDGLV ELVDRT+DEEALLRAVS DDDI A+LQRDTRASYEALK FM+ E+  R KNARDG GYIDFRDEM+RVTDGRGGMVWVRN+NVQKWL SH+ AAPTR
Sbjct:  838 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 965
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.050e-58
Identity = 104/128 (81.25%), Postives = 117/128 (91.41%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTA++ALNATTGL+V++S+FL+DVKDGLV ELVDRTLDEEALLRAVS DDDI A+LQRDTRASYEALK FM+ E+  R KNARDG GYIDFRDEM+RVTDGRGGMVWVRN+NVQKWL SH+ AAPTR
Sbjct:  670 VVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 797
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.160e-57
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNATTGL+VD+SDFLKDVKDGLVEELVDRTLD+EALLRAV  DD+I ADLQRDTRASYEALK FM+ E+  R KN RDG GYIDFRDEM+RV DGRGGMVWVRNENVQKWL S + AAPTR
Sbjct: 1185 VVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPTR 1312
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 6.430e-56
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNATTGL+VD+S+FLKDVKDGLV ELVDRTLDE ALLRAVS DDDI A+LQ DTRASYEALK FM+ E+  R KNARDG GYID RDEM+RVTDGRGGMVWVRN+NVQKWL SH+ AAPTR
Sbjct:  614 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 740
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 9.710e-54
Identity = 98/127 (77.17%), Postives = 112/127 (88.19%), Query Frame = 1 
Query:    4 VTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VTAK+ALNA TGLNVDVS FLKDV+DGL+ E+VDRTLDE+ALLRAVS D  I  DLQRDTRASYEALK FMENE+RRRRKNARDG GYIDFRD+M+ + DGRGG VW+RNENVQKWL S+++ AP+R
Sbjct: 1177 VTAKVALNAVTGLNVDVSGFLKDVQDGLLGEIVDRTLDEDALLRAVSGDGAIDTDLQRDTRASYEALKAFMENEERRRRKNARDGDGYIDFRDKMKLLPDGRGGEVWIRNENVQKWLDSNSSPAPSR 1303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 5.450e-52
Identity = 93/128 (72.66%), Postives = 111/128 (86.72%), Query Frame = 1 
Query:    1 VVTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAAPTR 384
            VVTAK+ALNAT GLNV++S+FLKDVKDGL +ELVDR+LDE+ALLR VS ++D+ AD+Q DTRASYEALK  M+ E+  R KNARDG GYIDFRD+M+RV DGRGGMVWVRNENVQ+WL SH+  AP+R
Sbjct: 1118 VVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPSR 1245
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BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.260e-48
Identity = 88/124 (70.97%), Postives = 107/124 (86.29%), Query Frame = 1 
Query:    4 VTAKMALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISADLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGGMVWVRNENVQKWLGSHATAA 375
            VTAK+AL AT+GL+VD+SDFLKDVKDGLV ELVD TLDE+ALLR VS ++D+ AD+++DTRASYEALK FM+ E+  R KNARDG GY+DFRD+M+RV DGRGGMVW+RNENVQ+W  S + AA
Sbjct: 1401 VTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDSRSNAA 1524
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13429.2738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KSY4_9PHAE4.570e-6585.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D3_9PHAE1.490e-6182.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI2.070e-5982.03LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5K1K4_9PHAE7.780e-5982.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K516_9PHAE6.050e-5881.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI4.160e-5782.03LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JYD1_9PHAE6.430e-5681.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF46_ECTSI9.710e-5477.17LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC3_ECTSI5.450e-5272.66LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LCS7_ECTSI3.260e-4870.97LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13429contigEcto-sp13_S_contig13429:1953..2339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score194.9
Seed ortholog evalue2.2e-47
Seed eggNOG ortholog2880.D8LJS7
Model size387
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons1
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size372
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.541258-UTR-Ecto-sp13_S_contig13429:1952..19671681462717.541258-UTR-Ecto-sp13_S_contig13429:1952..1967Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13429 1953..1967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.5511928-CDS-Ecto-sp13_S_contig13429:1967..23391681462717.5511928-CDS-Ecto-sp13_S_contig13429:1967..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13429 1968..2339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13429.2738.1prot_Ecto-sp13_S_contig13429.2738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13429 1968..2339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13429.2738.1

>prot_Ecto-sp13_S_contig13429.2738.1 ID=prot_Ecto-sp13_S_contig13429.2738.1|Name=mRNA_Ecto-sp13_S_contig13429.2738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MALNATTGLNVDVSDFLKDVKDGLVEELVDRTLDEEALLRAVSCDDDISA
DLQRDTRASYEALKVFMENEKRRRRKNARDGGGYIDFRDEMQRVTDGRGG
MVWVRNENVQKWLGSHATAAPTR*
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mRNA from alignment at Ecto-sp13_S_contig13429:1953..2339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13429.2738.1 ID=mRNA_Ecto-sp13_S_contig13429.2738.1|Name=mRNA_Ecto-sp13_S_contig13429.2738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13429:1953..2339+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGACCGCGAAGATGGCGCTGAACGCAACGACGGGGCTGAATGTTGA
TGTCTCGGACTTCCTGAAGGATGTGAAAGATGGGTTGGTCGAGGAGCTAG
TCGACCGCACTCTCGATGAGGAGGCACTGCTTCGTGCTGTTTCTTGTGAC
GACGACATCAGCGCAGATTTGCAAAGGGATACGAGGGCCTCGTATGAAGC
GCTGAAGGTTTTCATGGAAAACGAGAAACGCAGGAGGCGGAAGAACGCCC
GGGATGGTGGTGGCTACATTGACTTCAGGGACGAGATGCAACGTGTGACC
GACGGGAGGGGCGGGATGGTGTGGGTTCGGAACGAAAACGTTCAAAAGTG
GTTGGGCTCCCATGCGACTGCTGCTCCAACTCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13429:1953..2339+

>mRNA_Ecto-sp13_S_contig13429.2738.1 ID=mRNA_Ecto-sp13_S_contig13429.2738.1|Name=mRNA_Ecto-sp13_S_contig13429.2738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13429:1953..2339+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTGAACGCAACGACGGGGCTGAATGTTGATGTCTCGGACTTCCT
GAAGGATGTGAAAGATGGGTTGGTCGAGGAGCTAGTCGACCGCACTCTCG
ATGAGGAGGCACTGCTTCGTGCTGTTTCTTGTGACGACGACATCAGCGCA
GATTTGCAAAGGGATACGAGGGCCTCGTATGAAGCGCTGAAGGTTTTCAT
GGAAAACGAGAAACGCAGGAGGCGGAAGAACGCCCGGGATGGTGGTGGCT
ACATTGACTTCAGGGACGAGATGCAACGTGTGACCGACGGGAGGGGCGGG
ATGGTGTGGGTTCGGAACGAAAACGTTCAAAAGTGGTTGGGCTCCCATGC
GACTGCTGCTCCAACTCGCTAG
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