mRNA_Ecto-sp13_S_contig13387.2708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: D7FS59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS59_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 2.150e-138 Identity = 204/223 (91.48%), Postives = 210/223 (94.17%), Query Frame = 2
Query: 2 GGLFQPHRVTLQDMTDISHAEQGNGSGGGKQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEISDLQLEGWRVQSISAGGVHSAAILVRRPE 670
GGLFQPHRVTLQDMTD+SHAEQGNGSGGGKQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTP PLERGPI APVPPSPR AASAVPASD+PGGAVHGFGGTADSSAA PV +IGGGPA+RTTDPA MVALGGSHSLVMTSSGRVFGFGRQDDGRLGVE+NTEEV+SGSMLPLEISDLQLEGWRVQSISAGGVHSAAIL RRPE
Sbjct: 307 GGLFQPHRVTLQDMTDVSHAEQGNGSGGGKQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPAPLERGPIPAPVPPSPRSAASAVPASDKPGGAVHGFGGTADSSAAXXXXXXXPVAEIGGGPAVRTTDPARMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEMNTEEVDSGSMLPLEISDLQLEGWRVQSISAGGVHSAAILARRPE 529
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A6H5JED5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JED5_9PHAE) HSP 1 Score: 362 bits (929), Expect = 1.940e-123 Identity = 185/202 (91.58%), Postives = 190/202 (94.06%), Query Frame = 2
Query: 65 QGNGSGGGKQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEISDLQLEGWRVQSISAGGVHSAAILVRRPE 670
+GNGSG G+QKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLER PI APVPPSPR AASA ASDRPGGAVHGFGGT DSSAAVVPPSPPPV KIG G A+RTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTE V+SGSMLPLEIS+LQLEGWRVQSISAGGVHSAAIL RRPE
Sbjct: 142 EGNGSGSGRQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERSPIPAPVPPSPRSAASAGSASDRPGGAVHGFGGTVDSSAAVVPPSPPPVAKIGEGAAVRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEGVDSGSMLPLEISNLQLEGWRVQSISAGGVHSAAILARRPE 343
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A836CAY0_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY0_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.440e-10 Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 2
Query: 2 GGLFQPHRVTL--QDMTDISHAEQGNGSGGGKQKAKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVP 268
GGL PH VTL + A +G+ +KA VACGGWHT V+ G W CGRGEYGRLG+G++ S+ +PL + P P
Sbjct: 199 GGLSVPHLVTLGRPRLQSEGGASEGSAVTISSEKACMVACGGWHTIVMSRDGVPWACGRGEYGRLGMGNEASKSTPEALPLWQRQPGQPAP 289
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A2V0NMD6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NMD6_9CHLO) HSP 1 Score: 68.2 bits (165), Expect = 1.120e-9 Identity = 57/188 (30.32%), Postives = 77/188 (40.96%), Query Frame = 2
Query: 107 VACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEISDLQLEG----WRVQSISAGGVHSAAILV 658
+A GGWH+ V G V++ GRGEYGRLG+GD+ L P P+ G D VA GG+HSL +TS GRVF +GR GRLG+ + ++ S P+E L+L G WRV +++ GG HS + V
Sbjct: 281 IAAGGWHSMAVTADGAVYVWGRGEYGRLGVGDRTGSSKLRPQPVR---------------------------------GLEDQRVV-------------------------QVAAGGTHSLALTSDGRVFIWGRASYGRLGLGDSAKDQYS----PVE---LELPGGRERWRVAAVTCGGRHSMCLAV 403
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A836BQU2_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQU2_9CHLO) HSP 1 Score: 65.9 bits (159), Expect = 7.670e-9 Identity = 62/192 (32.29%), Postives = 80/192 (41.67%), Query Frame = 2
Query: 107 VACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTE--EVESGSMLPLEIS-DLQLEGWRVQSISAGGVHSA--AILVRRP 667
+A GGWH+A + G VW+ GRGEYGRLGLGD+ L P V G S VV VA GGSH++ +TS+ R+F +GR GRLG+ E+ + P+E +E WRV +I+AGG HS AI VR P
Sbjct: 559 IAAGGWHSAALSSAGEVWVWGRGEYGRLGLGDRSGSSKLRPQK------------------------------VRGL-----ESHVVV-----------------------QVAAGGSHTMALTSTARLFVWGRGAYGRLGMAGGGGGGELLADCYHPVECCLPGGVERWRVAAIAAGGRHSMVLAIPVRDP 692
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A8J4CZS1_9CHLO (Uncharacterized protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CZS1_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 1.010e-8 Identity = 56/184 (30.43%), Postives = 72/184 (39.13%), Query Frame = 2
Query: 107 VACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEISDLQLEGWRVQSISAGGVHSAAILV 658
+A GGWH+ + G VW+ GRGEYGRLGLGD+ L P + RG L A V VA GGSH+L +TS+ R+F +GR GRLG+ + PL E WRV +I AGG HS + +
Sbjct: 435 IAAGGWHSCALSSAGEVWVWGRGEYGRLGLGDRSGSSKLRPQKV-RG-----------LEAHVV----------------------------------------------VQVAAGGSHTLALTSTARLFVWGRGAFGRLGLGDPERDCYHPVECPLPGGT---ERWRVAAIGAGGRHSICLAI 557
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A8J4B346_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B346_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 1.010e-8 Identity = 57/185 (30.81%), Postives = 75/185 (40.54%), Query Frame = 2
Query: 107 VACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEIS-DLQLEGWRVQSISAGGVHSAAILV 658
+A GGWH+ + G VW+ GRGEYGRLGLGD+ L P + RG L A V VA GGSH+L +TS+ R+F +GR GRLG+ + E P+E + E WRV +I AGG HS + +
Sbjct: 452 IAAGGWHSCALSSAGEVWVWGRGEYGRLGLGDRSGSSKLRPQKV-RG-----------LEAHVV----------------------------------------------VQVAAGGSHTLALTSTARLFVWGRGAFGRLGLG----DPERDCYHPVECALPGGTERWRVAAIGAGGRHSICLAI 574
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A0K9Q5A0_ZOSMR (Regulator of chromosome condensation (RCC1) family protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q5A0_ZOSMR) HSP 1 Score: 64.7 bits (156), Expect = 1.400e-8 Identity = 57/193 (29.53%), Postives = 82/193 (42.49%), Query Frame = 2
Query: 107 VACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWHLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPSPPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSSGRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEIS----DLQLEG-------WRVQSISAGGVHSAAI 652
++ GGWH+A + + G V+ GRGE+GRLGLG+ KS L P V + G I+ V+ GGSHS+ +T GR+F +GR DDGRLG N ++ +G P+E+S +++G WR Q I+ GG H+ AI
Sbjct: 288 ISAGGWHSAALTDDGEVYAWGRGEHGRLGLGEDKSSKML----------------------------------------------------PQKVQLLEGEHIIQ-------VSCGGSHSVALTRDGRMFSYGRGDDGRLG---NNGKLTNGH--PMEVSINVAPPKIDGATAVIGQWRAQYIACGGRHTIAI 416
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A2D4BF31_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF31_PYTIN) HSP 1 Score: 63.9 bits (154), Expect = 3.120e-8 Identity = 68/213 (31.92%), Postives = 92/213 (43.19%), Query Frame = 2
Query: 98 AKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQW--HLTPVPLERGPISAPVPPSPRLAASAVPASDRPGGAVHGFGGTADSSAAVVPPS--PPPVGKIGGGPAIRTTDPASMVALGGSHSLVMTSS------------------------GRVFGFGRQDDGRLGVEVNTEEVESGSMLPLEISDLQLEGWRVQSISAGGVHSAAI 652
A V+CGGWHT VV +G + GRGEYGRLGLGD +S++ HL + A + L + + G A HG G AD ++ V+P +G I P V+ GG+HS+ + S G VF +G G+LG +V+S S+ P I G V IS GG HSAA+
Sbjct: 294 ALRVSCGGWHTVVVTREGECYSFGRGEYGRLGLGDTRSRYRPHLVEALKGHRVVQAACGGTHTLFLTTDGVAFSAGRADHGRLGHADRNSTVLPEQLDQSAMGAI----------PVRQVSAGGAHSIALLHSSRPLMSPLIAPASGEPAVPQTTLFGEVFSWGWGAMGQLG----HGDVKSSSV-PRRIEFFPDNGLVVDYISCGGCHSAAV 491
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Match: A0A1V9YL31_9STRA (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL31_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.570e-7 Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2
Query: 98 AKAVACGGWHTAVVGEKGGVWMCGRGEYGRLGLGDQKSQWH 220
A +V+CGGWHT VV GGV++ GRGEYGRLGLGD +S H
Sbjct: 297 ATSVSCGGWHTVVVARTGGVYVFGRGEYGRLGLGDTRSHSH 337 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13387.2708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13387.2708.1 >prot_Ecto-sp13_S_contig13387.2708.1 ID=prot_Ecto-sp13_S_contig13387.2708.1|Name=mRNA_Ecto-sp13_S_contig13387.2708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp GWSLSTPPRHAAGHDRHLSRGAGERLWRREAEGQSSRLRGVAHGSGWREGback to top mRNA from alignment at Ecto-sp13_S_contig13387:1869..4519- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13387.2708.1 ID=mRNA_Ecto-sp13_S_contig13387.2708.1|Name=mRNA_Ecto-sp13_S_contig13387.2708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13387:1869..4519- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13387:1869..4519- >mRNA_Ecto-sp13_S_contig13387.2708.1 ID=mRNA_Ecto-sp13_S_contig13387.2708.1|Name=mRNA_Ecto-sp13_S_contig13387.2708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13387:1869..4519- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |