prot_Ecto-sp13_S_contig13385.2706.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13385.2706.1
Unique Nameprot_Ecto-sp13_S_contig13385.2706.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length35
Homology
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: D7FTH9_ECTSI (Diphosphomevalonate decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ
Sbjct:   12 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 46          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A225VS49_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VS49_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.610e-13
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPMNSSVSVTLHQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: W2PHI1_PHYPN (Diphosphomevalonate decarboxylase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PHI1_PHYPN)

HSP 1 Score: 67.0 bits (162), Expect = 7.220e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD+VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDNVALNTPINSSVSVTLHQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A067CL82_SAPPC (Diphosphomevalonate decarboxylase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CL82_SAPPC)

HSP 1 Score: 67.4 bits (163), Expect = 3.670e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCS PTNIAVIKYWGKDSVALNTPINSS SVTL+Q
Sbjct:    5 TCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A1W0A6I2_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6I2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.000e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCS PTNIAVIKYWGKDSVALNTPINSS SVTL+Q
Sbjct:  167 TCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 201          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: V9EFE7_PHYPR (Diphosphomevalonate decarboxylase n=9 Tax=Phytophthora TaxID=4783 RepID=V9EFE7_PHYPR)

HSP 1 Score: 67.0 bits (162), Expect = 5.440e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD+VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDNVALNTPINSSVSVTLHQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: D0NSI7_PHYIT (Diphosphomevalonate decarboxylase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NSI7_PHYIT)

HSP 1 Score: 66.6 bits (161), Expect = 7.370e-12
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPINSSVSVTLHQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: H3HB33_PHYRM (Diphosphomevalonate decarboxylase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB33_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPVNSSVSVTLHQ 39          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A6A3WXD2_9STRA (Diphosphomevalonate decarboxylase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WXD2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.390e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    7 TCSAPTNIAVIKYWGKDDVALNTPLNSSVSVTLHQ 41          
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A3R7D131_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D131_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 35
            TCS PTNIAVIKYWGKD+VALNTP+NSS SVTL+Q
Sbjct:   13 TCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 47          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTH9_ECTSI1.250e-13100.00Diphosphomevalonate decarboxylase n=2 Tax=Ectocarp... [more]
A0A225VS49_9STRA5.610e-1388.57Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
W2PHI1_PHYPN7.220e-1391.43Diphosphomevalonate decarboxylase n=1 Tax=Phytopht... [more]
A0A067CL82_SAPPC3.670e-1291.43Diphosphomevalonate decarboxylase n=3 Tax=Saproleg... [more]
A0A1W0A6I2_9STRA4.000e-1291.43Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
V9EFE7_PHYPR5.440e-1291.43Diphosphomevalonate decarboxylase n=9 Tax=Phytopht... [more]
D0NSI7_PHYIT7.370e-1291.43Diphosphomevalonate decarboxylase n=2 Tax=Phytopht... [more]
H3HB33_PHYRM1.020e-1188.57Diphosphomevalonate decarboxylase n=1 Tax=Phytopht... [more]
A0A6A3WXD2_9STRA1.390e-1188.57Diphosphomevalonate decarboxylase n=3 Tax=Phytopht... [more]
A0A3R7D131_9STRA1.700e-1185.71Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..35
e-value: 3.5E-14
score: 54.7
NoneNo IPR availablePANTHERPTHR10977DIPHOSPHOMEVALONATE DECARBOXYLASEcoord: 1..35
NoneNo IPR availablePANTHERPTHR10977:SF3DIPHOSPHOMEVALONATE DECARBOXYLASEcoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13385contigEcto-sp13_S_contig13385:4498..4602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13385.2706.1mRNA_Ecto-sp13_S_contig13385.2706.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13385 4498..4602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13385.2706.1 ID=prot_Ecto-sp13_S_contig13385.2706.1|Name=mRNA_Ecto-sp13_S_contig13385.2706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr