mRNA_Ecto-sp13_S_contig13385.2706.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13385.2706.1
Unique NamemRNA_Ecto-sp13_S_contig13385.2706.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: D7FTH9_ECTSI (Diphosphomevalonate decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ
Sbjct:   12 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 46
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A225VS49_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VS49_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.610e-13
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPMNSSVSVTLHQ 39
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: W2PHI1_PHYPN (Diphosphomevalonate decarboxylase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PHI1_PHYPN)

HSP 1 Score: 67.0 bits (162), Expect = 7.220e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD+VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDNVALNTPINSSVSVTLHQ 39
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A067CL82_SAPPC (Diphosphomevalonate decarboxylase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CL82_SAPPC)

HSP 1 Score: 67.4 bits (163), Expect = 3.670e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCS PTNIAVIKYWGKDSVALNTPINSS SVTL+Q
Sbjct:    5 TCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 39
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A1W0A6I2_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6I2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.000e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCS PTNIAVIKYWGKDSVALNTPINSS SVTL+Q
Sbjct:  167 TCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 201
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: V9EFE7_PHYPR (Diphosphomevalonate decarboxylase n=9 Tax=Phytophthora TaxID=4783 RepID=V9EFE7_PHYPR)

HSP 1 Score: 67.0 bits (162), Expect = 5.440e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD+VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDNVALNTPINSSVSVTLHQ 39
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: D0NSI7_PHYIT (Diphosphomevalonate decarboxylase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NSI7_PHYIT)

HSP 1 Score: 66.6 bits (161), Expect = 7.370e-12
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD VALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPINSSVSVTLHQ 39
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BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: H3HB33_PHYRM (Diphosphomevalonate decarboxylase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB33_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPVNSSVSVTLHQ 39
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A6A3WXD2_9STRA (Diphosphomevalonate decarboxylase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WXD2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.390e-11
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCSAPTNIAVIKYWGKD VALNTP+NSS SVTL Q
Sbjct:    7 TCSAPTNIAVIKYWGKDDVALNTPLNSSVSVTLHQ 41
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Match: A0A3R7D131_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D131_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 105
            TCS PTNIAVIKYWGKD+VALNTP+NSS SVTL+Q
Sbjct:   13 TCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13385.2706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTH9_ECTSI1.250e-13100.00Diphosphomevalonate decarboxylase n=2 Tax=Ectocarp... [more]
A0A225VS49_9STRA5.610e-1388.57Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
W2PHI1_PHYPN7.220e-1391.43Diphosphomevalonate decarboxylase n=1 Tax=Phytopht... [more]
A0A067CL82_SAPPC3.670e-1291.43Diphosphomevalonate decarboxylase n=3 Tax=Saproleg... [more]
A0A1W0A6I2_9STRA4.000e-1291.43Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
V9EFE7_PHYPR5.440e-1291.43Diphosphomevalonate decarboxylase n=9 Tax=Phytopht... [more]
D0NSI7_PHYIT7.370e-1291.43Diphosphomevalonate decarboxylase n=2 Tax=Phytopht... [more]
H3HB33_PHYRM1.020e-1188.57Diphosphomevalonate decarboxylase n=1 Tax=Phytopht... [more]
A0A6A3WXD2_9STRA1.390e-1188.57Diphosphomevalonate decarboxylase n=3 Tax=Phytopht... [more]
A0A3R7D131_9STRA1.700e-1185.71Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13385contigEcto-sp13_S_contig13385:4498..4602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score71.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FTH9
Preferred nameMVD
Model size105
KEGG rclassRC00453
KEGG koko:K01597
KEGG ReactionR01121
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004163,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008284,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009889,GO:0009987,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016829,GO:0016830,GO:0016831,GO:0019216,GO:0019218,GO:0019222,GO:0019287,GO:0019538,GO:0019637,GO:0019693,GO:0030544,GO:0031072,GO:0031907,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034645,GO:0035383,GO:0036211,GO:0042127,GO:0042221,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045540,GO:0046165,GO:0046465,GO:0046483,GO:0046490,GO:0046890,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051186,GO:0055086,GO:0062012,GO:0065007,GO:0070013,GO:0070085,GO:0071704,GO:0072521,GO:0080090,GO:0090181,GO:0090407,GO:0097384,GO:0106118,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Exons1
EggNOG free text desc.diphosphomevalonate decarboxylase activity
EggNOG OGsCOG3407@1,KOG2833@2759
EC4.1.1.33
Cds size105
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.1151953-CDS-Ecto-sp13_S_contig13385:4497..46021681462715.1151953-CDS-Ecto-sp13_S_contig13385:4497..4602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13385 4498..4602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13385.2706.1prot_Ecto-sp13_S_contig13385.2706.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13385 4498..4602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13385.2706.1

>prot_Ecto-sp13_S_contig13385.2706.1 ID=prot_Ecto-sp13_S_contig13385.2706.1|Name=mRNA_Ecto-sp13_S_contig13385.2706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
TCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ
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mRNA from alignment at Ecto-sp13_S_contig13385:4498..4602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13385.2706.1 ID=mRNA_Ecto-sp13_S_contig13385.2706.1|Name=mRNA_Ecto-sp13_S_contig13385.2706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13385:4498..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGCTCGGCCCCGACAAACATAGCGGTGATCAAGTACTGGGGCAAGGA
CAGCGTTGCGCTCAACACGCCCATCAACTCCTCAGCCAGCGTGACCCTCT
CCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13385:4498..4602+

>mRNA_Ecto-sp13_S_contig13385.2706.1 ID=mRNA_Ecto-sp13_S_contig13385.2706.1|Name=mRNA_Ecto-sp13_S_contig13385.2706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13385:4498..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGCTCGGCCCCGACAAACATAGCGGTGATCAAGTACTGGGGCAAGGA
CAGCGTTGCGCTCAACACGCCCATCAACTCCTCAGCCAGCGTGACCCTCT
CCCAG
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