mRNA_Ecto-sp13_S_contig13381.2703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13381.2703.1
Unique NamemRNA_Ecto-sp13_S_contig13381.2703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13381.2703.1 vs. uniprot
Match: D8LL94_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL94_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 7.180e-104
Identity = 279/306 (91.18%), Postives = 283/306 (92.48%), Query Frame = 1 
Query:  310 QEGAEFAQANRKAQAKAPQRGGEGNDGQGSKSVGSDSDPEEIRTAAEGVGNSPARAEASSSSWMSPSCEGENGGERERTREQQPELLAVLARLQGLENTWATRVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPTGAGSGXXXGGRHRGGFDNHRQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RAQESAGKRSSTRGKGPAFPPSERKHGGALATAAAVAFPMAPPPSPMIPQEARRSFAPDGADSDNDY 1224
            QEG EFAQAN+KAQAK  QRGGEGNDGQGS+SVGSDSD EEIRTAAEG G SPARA ASSSSWM PSCEGENGGERE TREQQPEL AVLARLQGLEN+W  RVKQFEKLLALKDLRIESLTLLHKHGPLSSGRP GAGSG   GGRHR GFDNHRQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RA+E A KR STRGKGPAFPPSERKHGGALATAAAVAFP APPPSPMIPQEARRSFA DGADSDNDY
Sbjct:  489 QEGGEFAQANKKAQAKTQQRGGEGNDGQGSRSVGSDSDLEEIRTAAEGGGKSPARAGASSSSWMPPSCEGENGGEREGTREQQPELRAVLARLQGLENSWVARVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPAGAGSGSVSGGRHRRGFDNHRQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERAEEGARKRGSTRGKGPAFPPSERKHGGALATAAAVAFPTAPPPSPMIPQEARRSFALDGADSDNDY 794
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BLAST of mRNA_Ecto-sp13_S_contig13381.2703.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 3.480e-75
Identity = 253/313 (80.83%), Postives = 261/313 (83.39%), Query Frame = 1 
Query:  307 RQEGAEFAQANRKAQAKAPQRGGEGNDGQGSKSVGSDSDPEEIRTAAEGVGNSPARAEASSSSWMSPSCEGENGGERERTREQQPELLAVLARLQGLENTWATRVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPTGAGSGXXXGGRHRGGFDNHRQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-------AQESAGKRSSTRGKGPAFPPSERKHGGALATAAAVAFPMAPPPSPMIPQEARRSFAPDGADSDNDY 1224
            RQEG EFAQANRKAQAKA QRGGEGNDGQ SKS+GSDSD EEIR AAEG G SPAR +ASSSSWMS SC+ ENGGE+E TR+QQPELLAVLARLQGLENTW  RVKQFE+LLALKDLRIESLTLLHKHGPLSSGRP GA S   X                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        A       SSTRG+GPA PPS+RKHGGALATAAAVAFP APPPSPMIPQEARRSFA DGADSDNDY
Sbjct:  997 RQEGGEFAQANRKAQAKAQQRGGEGNDGQVSKSIGSDSDLEEIRMAAEGGGKSPARVKASSSSWMSSSCKVENGGEKEGTRKQQPELLAVLARLQGLENTWVARVKQFEQLLALKDLRIESLTLLHKHGPLSSGRPAGADSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXGEGAXXXXXXXSSTRGEGPASPPSQRKHGGALATAAAVAFPTAPPPSPMIPQEARRSFALDGADSDNDY 1309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13381.2703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL94_ECTSI7.180e-10491.18Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KQA5_9PHAE3.480e-7580.83Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13381contigEcto-sp13_S_contig13381:2846..4072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score341.7
Seed ortholog evalue4.9e-91
Seed eggNOG ortholog2880.D8LL94
Model size1227
KEGG koko:K10396
KEGG Pathwayko04144,ko04728,map04144,map04728
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008574,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030029,GO:0030036,GO:0030705,GO:0032991,GO:0033036,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046907,GO:0048471,GO:0051015,GO:0051017,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061572,GO:0071840,GO:0097435,GO:1990939
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0240@2759
Cds size1227
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.0052152-CDS-Ecto-sp13_S_contig13381:2845..40721681462715.0052152-CDS-Ecto-sp13_S_contig13381:2845..4072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13381 2846..4072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13381.2703.1prot_Ecto-sp13_S_contig13381.2703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13381 2846..4072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13381.2703.1

>prot_Ecto-sp13_S_contig13381.2703.1 ID=prot_Ecto-sp13_S_contig13381.2703.1|Name=mRNA_Ecto-sp13_S_contig13381.2703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
GVRSCWARRRSRSGGRSSWSRERDEGSGGGGPLPRRRPAVSSGGSGQDGE
GGTGSAKPLPPPPPPSNSPSSCSATDVPAANAAAVGAAAVAAAARGRGRE
LVRQEGAEFAQANRKAQAKAPQRGGEGNDGQGSKSVGSDSDPEEIRTAAE
GVGNSPARAEASSSSWMSPSCEGENGGERERTREQQPELLAVLARLQGLE
NTWATRVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPTGAGSGSGSGGR
HRGGFDNHRQVAEEEEEEEEEAALAKSNGAATPSGKQGGAPGSAGGRRKK
RRSSPRVRRSPRRERISPRRSPGGGEAAAEEEEAENSGGGERAQESAGKR
SSTRGKGPAFPPSERKHGGALATAAAVAFPMAPPPSPMIPQEARRSFAPD
GADSDNDY*
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mRNA from alignment at Ecto-sp13_S_contig13381:2846..4072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13381.2703.1 ID=mRNA_Ecto-sp13_S_contig13381.2703.1|Name=mRNA_Ecto-sp13_S_contig13381.2703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13381:2846..4072- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGCGCAGCTGCTGGGCGCGCCGCAGGTCGCGGTCCGGAGGCCGCAG
CAGCTGGAGCCGGGAGAGGGATGAGGGCAGCGGCGGCGGCGGTCCTCTGC
CGCGCCGCCGCCCAGCGGTCTCTTCCGGAGGCTCGGGGCAGGACGGAGAA
GGAGGGACGGGAAGCGCCAAGCCCCTGCCGCCGCCGCCGCCGCCGTCCAA
TTCGCCGTCTTCTTGTAGTGCTACCGATGTTCCGGCGGCGAATGCAGCGG
CGGTAGGGGCGGCGGCGGTGGCGGCGGCTGCTCGGGGGCGGGGGCGGGAG
CTAGTGCGGCAGGAAGGCGCTGAGTTCGCCCAGGCGAATAGGAAGGCTCA
GGCGAAAGCGCCGCAGCGGGGGGGAGAGGGAAACGACGGGCAAGGGTCAA
AATCGGTCGGCTCCGACTCTGATCCGGAAGAGATCAGGACGGCGGCGGAG
GGGGTGGGGAATTCGCCGGCACGGGCGGAGGCGTCGTCATCGTCTTGGAT
GTCGCCGTCTTGCGAGGGGGAGAACGGAGGAGAGAGGGAGCGCACGCGGG
AGCAACAACCGGAGCTGCTCGCGGTGCTGGCCAGGCTGCAGGGGCTGGAG
AACACGTGGGCCACGAGGGTGAAGCAGTTCGAGAAGCTGCTGGCGCTCAA
AGACCTCCGCATAGAGTCTCTGACGCTGCTCCACAAGCACGGGCCGCTGT
CCTCCGGCCGGCCAACAGGTGCTGGCAGCGGCAGCGGTAGCGGTGGCCGC
CACCGCGGCGGTTTCGACAACCACCGCCAGGTGGCAGAAGAGGAGGAGGA
GGAGGAGGAGGAGGCCGCCCTCGCGAAGAGTAACGGCGCCGCCACCCCTT
CAGGGAAGCAAGGCGGGGCGCCCGGCAGCGCGGGCGGGAGGCGCAAGAAG
AGGCGGAGCTCCCCACGGGTGAGGCGCTCGCCTAGACGAGAACGGATCTC
TCCGAGGCGGTCACCGGGAGGCGGGGAAGCGGCGGCGGAAGAGGAAGAGG
CTGAGAATAGCGGCGGCGGGGAGAGGGCCCAAGAGAGCGCCGGGAAGCGC
AGCAGCACGCGCGGGAAAGGTCCCGCCTTCCCGCCGAGCGAGCGTAAGCA
CGGGGGTGCCTTGGCGACAGCGGCGGCGGTGGCCTTCCCCATGGCGCCCC
CGCCGTCGCCCATGATCCCGCAGGAAGCCCGCAGGTCGTTCGCGCCCGAC
GGCGCCGACTCTGACAACGATTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13381:2846..4072-

>mRNA_Ecto-sp13_S_contig13381.2703.1 ID=mRNA_Ecto-sp13_S_contig13381.2703.1|Name=mRNA_Ecto-sp13_S_contig13381.2703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13381:2846..4072- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGCGCAGCTGCTGGGCGCGCCGCAGGTCGCGGTCCGGAGGCCGCAG
CAGCTGGAGCCGGGAGAGGGATGAGGGCAGCGGCGGCGGCGGTCCTCTGC
CGCGCCGCCGCCCAGCGGTCTCTTCCGGAGGCTCGGGGCAGGACGGAGAA
GGAGGGACGGGAAGCGCCAAGCCCCTGCCGCCGCCGCCGCCGCCGTCCAA
TTCGCCGTCTTCTTGTAGTGCTACCGATGTTCCGGCGGCGAATGCAGCGG
CGGTAGGGGCGGCGGCGGTGGCGGCGGCTGCTCGGGGGCGGGGGCGGGAG
CTAGTGCGGCAGGAAGGCGCTGAGTTCGCCCAGGCGAATAGGAAGGCTCA
GGCGAAAGCGCCGCAGCGGGGGGGAGAGGGAAACGACGGGCAAGGGTCAA
AATCGGTCGGCTCCGACTCTGATCCGGAAGAGATCAGGACGGCGGCGGAG
GGGGTGGGGAATTCGCCGGCACGGGCGGAGGCGTCGTCATCGTCTTGGAT
GTCGCCGTCTTGCGAGGGGGAGAACGGAGGAGAGAGGGAGCGCACGCGGG
AGCAACAACCGGAGCTGCTCGCGGTGCTGGCCAGGCTGCAGGGGCTGGAG
AACACGTGGGCCACGAGGGTGAAGCAGTTCGAGAAGCTGCTGGCGCTCAA
AGACCTCCGCATAGAGTCTCTGACGCTGCTCCACAAGCACGGGCCGCTGT
CCTCCGGCCGGCCAACAGGTGCTGGCAGCGGCAGCGGTAGCGGTGGCCGC
CACCGCGGCGGTTTCGACAACCACCGCCAGGTGGCAGAAGAGGAGGAGGA
GGAGGAGGAGGAGGCCGCCCTCGCGAAGAGTAACGGCGCCGCCACCCCTT
CAGGGAAGCAAGGCGGGGCGCCCGGCAGCGCGGGCGGGAGGCGCAAGAAG
AGGCGGAGCTCCCCACGGGTGAGGCGCTCGCCTAGACGAGAACGGATCTC
TCCGAGGCGGTCACCGGGAGGCGGGGAAGCGGCGGCGGAAGAGGAAGAGG
CTGAGAATAGCGGCGGCGGGGAGAGGGCCCAAGAGAGCGCCGGGAAGCGC
AGCAGCACGCGCGGGAAAGGTCCCGCCTTCCCGCCGAGCGAGCGTAAGCA
CGGGGGTGCCTTGGCGACAGCGGCGGCGGTGGCCTTCCCCATGGCGCCCC
CGCCGTCGCCCATGATCCCGCAGGAAGCCCGCAGGTCGTTCGCGCCCGAC
GGCGCCGACTCTGACAACGATTACTGA
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