mRNA_Ecto-sp13_S_contig13381.2704.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13381.2704.1
Unique NamemRNA_Ecto-sp13_S_contig13381.2704.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13381.2704.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.590e-33
Identity = 88/103 (85.44%), Postives = 88/103 (85.44%), Query Frame = -1 
Query:    1 PHWGWSARSSRADYFGATPGGNRSAEAHRLRRTGSASSSIKSTTSVRRLWSEDXXXXXXXXXXXXXXXXXXXXXXXXXGAGPESPAFAELVVVEKVTPAASGG 309
            PH GWSAR SRADYFGATPGGNRS EAHRLRRTGSASSSIKSTTSVRRLWSED          XXXXXXXXXXXXX  GAGPESPAFAELVVVEKVTPAASGG
Sbjct:  797 PHRGWSARCSRADYFGATPGGNRSVEAHRLRRTGSASSSIKSTTSVRRLWSEDDEHNAADGASXXXXXXXXXXXXX--GAGPESPAFAELVVVEKVTPAASGG 897
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13381.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQA5_9PHAE3.590e-3385.44Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13381contigEcto-sp13_S_contig13381:4076..4386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size311
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.979822-CDS-Ecto-sp13_S_contig13381:4075..43841681462714.979822-CDS-Ecto-sp13_S_contig13381:4075..4384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13381 4076..4384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13381.2704.1prot_Ecto-sp13_S_contig13381.2704.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13381 4076..4384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13381.2704.1

>prot_Ecto-sp13_S_contig13381.2704.1 ID=prot_Ecto-sp13_S_contig13381.2704.1|Name=mRNA_Ecto-sp13_S_contig13381.2704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
APARGRCDLLHYHQLRERGRLRACSCCGSSASSSGGGGGGASVIGGVALF
VLRPQPPHARGALDAAAGAARPSQSVRLGTPVPAGGGPEVVGARRPSGPA
PVR
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mRNA from alignment at Ecto-sp13_S_contig13381:4076..4386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13381.2704.1 ID=mRNA_Ecto-sp13_S_contig13381.2704.1|Name=mRNA_Ecto-sp13_S_contig13381.2704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13381:4076..4386+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCTCGCGGCCGGTGTGACCTTCTCCACTACCACCAGCTCCGCGA
ACGCGGGAGACTCAGGGCCTGCTCCTGCTGCGGCAGCAGCGCCAGCAGCA
GCGGCGGCGGCGGCGGCGGCGCTAGCGTCATCGGCGGCGTTGCGCTCTTC
GTCCTCCGACCACAACCGCCGCACGCTCGTGGTGCTCTTGATGCTGCTGC
TGGCGCTGCCCGTCCGTCTCAGTCGGTGCGCCTCGGCACTCCTGTTCCCG
CCGGGGGTGGCCCCGAAGTAGTCGGCGCGCGAAGACCTAGCGGACCAGCC
CCAGTGAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13381:4076..4386+

>mRNA_Ecto-sp13_S_contig13381.2704.1 ID=mRNA_Ecto-sp13_S_contig13381.2704.1|Name=mRNA_Ecto-sp13_S_contig13381.2704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13381:4076..4386+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCTCGCGGCCGGTGTGACCTTCTCCACTACCACCAGCTCCGCGA
ACGCGGGAGACTCAGGGCCTGCTCCTGCTGCGGCAGCAGCGCCAGCAGCA
GCGGCGGCGGCGGCGGCGGCGCTAGCGTCATCGGCGGCGTTGCGCTCTTC
GTCCTCCGACCACAACCGCCGCACGCTCGTGGTGCTCTTGATGCTGCTGC
TGGCGCTGCCCGTCCGTCTCAGTCGGTGCGCCTCGGCACTCCTGTTCCCG
CCGGGGGTGGCCCCGAAGTAGTCGGCGCGCGAAGACCTAGCGGACCAGCC
CCAGTGAGG
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