mRNA_Ecto-sp13_S_contig13377.2697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13377.2697.1
Unique NamemRNA_Ecto-sp13_S_contig13377.2697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13377.2697.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.920e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 2 
Query:    2 MGLAGGDGGSRHVYLGDMGHARVQRTLQAIAEDVQ 106
            MGLAGGDGGSRH+YLGDMGHARVQRTLQAIAEDVQ
Sbjct:  244 MGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQ 278
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BLAST of mRNA_Ecto-sp13_S_contig13377.2697.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.360e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 2 
Query:    2 MGLAGGDGGSRHVYLGDMGHARVQRTLQAIAEDVQ 106
            +GLAGGDGGSRH+YLGDMGHARVQRTLQAIAEDVQ
Sbjct:  289 LGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQ 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13377.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMH3_9PHAE4.920e-1397.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF16_ECTSI2.360e-1294.29PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13377contigEcto-sp13_S_contig13377:2970..4344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.4343288-CDS-Ecto-sp13_S_contig13377:2969..30751681462714.4343288-CDS-Ecto-sp13_S_contig13377:2969..3075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13377 2970..3075 +
1681462714.4462824-CDS-Ecto-sp13_S_contig13377:4084..43441681462714.4462824-CDS-Ecto-sp13_S_contig13377:4084..4344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13377 4085..4344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13377.2697.1prot_Ecto-sp13_S_contig13377.2697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13377 2970..4344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13377.2697.1

>prot_Ecto-sp13_S_contig13377.2697.1 ID=prot_Ecto-sp13_S_contig13377.2697.1|Name=mRNA_Ecto-sp13_S_contig13377.2697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
DGARRGRRRQQACLPRGHGAREGPADSSSHSGRRAGSVSGQAFLGGVPVL
PRPQETEPDGSLLVLPGTPPPASVHTPSTAAAAGENLLRVTRCRRPPPVV
SPRGPRGQWSGAAAAVAEGVV*
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mRNA from alignment at Ecto-sp13_S_contig13377:2970..4344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13377.2697.1 ID=mRNA_Ecto-sp13_S_contig13377.2697.1|Name=mRNA_Ecto-sp13_S_contig13377.2697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13377:2970..4344+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGGGCTCGCCGGGGGCGACGGCGGCAGCAGGCATGTCTACCTCGGGG
ACATGGGGCACGCGAGGGTCCAGCGGACTCTTCAAGCCATAGCGGAAGAC
GTGCAGGTAGGCCGCGGGAGGGGGGTCACGTTTTCTGGAAATATACAAAC
AATCTAATCACAAAGAAAGACTGCACCCTTGGAGATAGTACCGCAGTAGT
CGAAGGGGCGTTGTGAAGTCTTTACAATGAGTGGGAGAAAAAACGGCTGG
ATATCGGTCTTATTTTTAGTCTGTTTAAGCCTACAATTGTATACACTGAA
TTTTGTTTTGAGTGCCTACTTCACCCTCACTCCTCGTGCTTACTGCGGTT
GACTAGGTGTAGCGTGCTGGCATGGTATTTTGCTGACACGGTAGCCGGAG
AGCTGGTTCGTGAATCGATAGAACGATACGGTAGCGGGAGAGCTGGTTCG
TGAATCGATAAAACGGTGTGTAAGGAGTGATCTCAATGAGGATATTTTTT
TTTGTTGGCACAAGGTTGAGAACTAATCAAGCATTGCCTCGAGCTAGCTG
CATGTGTGATAATAACATGTCATCATTCGCAAAGACTTTGATAGCATCCC
CGAAAGAAAAGGGGGAGTTGTGGCAATCAATCTTCCCGGTCAATCTTCCC
TCCGTGGTCAGGTGCTAAAATTAAGTTGCTGTCGAGGATACCGTAAACGT
GTCAAGTTGTCGACTTCATGCACGCCACTCCCTCAACAAAGACCGAAGTG
CGGAACACCTACTGAACTTCAGGCAAAGCTTTCGACGGCATCTTTCCAAC
GTGCCCTTTGTCAGCATGGGAGCTGTTCTACCTATAAGCAATCGAACAGA
AGTGGAAGTATTCCGTGTGCCGTGACTTGCGCTTTTACAGTATTGAGTAC
TCCACCGCCTGGACGAAGCCTCACTCAGCTTCGTCGAGCATTGAGAGCTT
ATCCCACATTGCCACCCAGAACTGCTGCCGTTCATCCACGTATGCATACA
ACGGTTTACATGTTGGGATCACCCCCGGCCGAATGTGGGAGGTACCACCG
CCGTATTGTTTCTCACGGTACCCTCATCTCCCCCCCCCCCTCCCCTGTAC
GTTCGGTGGTGCCAGGGTCTGTTTCAGGTCAGGCATTCCTCGGAGGAGTG
CCGGTTCTTCCACGGCCGCAAGAGACCGAGCCTGACGGATCCCTCCTCGT
CCTCCCTGGAACACCGCCTCCCGCCTCCGTCCACACTCCTAGCACCGCCG
CCGCCGCCGGCGAAAACCTCCTTCGCGTCACCCGGTGCCGCCGCCCCCCC
CCCGTTGTTTCACCACGGGGCCCCCGGGGTCAGTGGTCCGGAGCCGCCGC
CGCCGTTGCCGAGGGAGTTGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13377:2970..4344+

>mRNA_Ecto-sp13_S_contig13377.2697.1 ID=mRNA_Ecto-sp13_S_contig13377.2697.1|Name=mRNA_Ecto-sp13_S_contig13377.2697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13377:2970..4344+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGGGCTCGCCGGGGGCGACGGCGGCAGCAGGCATGTCTACCTCGGGG
ACATGGGGCACGCGAGGGTCCAGCGGACTCTTCAAGCCATAGCGGAAGAC
GTGCAGGGTCTGTTTCAGGTCAGGCATTCCTCGGAGGAGTGCCGGTTCTT
CCACGGCCGCAAGAGACCGAGCCTGACGGATCCCTCCTCGTCCTCCCTGG
AACACCGCCTCCCGCCTCCGTCCACACTCCTAGCACCGCCGCCGCCGCCG
GCGAAAACCTCCTTCGCGTCACCCGGTGCCGCCGCCCCCCCCCCGTTGTT
TCACCACGGGGCCCCCGGGGTCAGTGGTCCGGAGCCGCCGCCGCCGTTGC
CGAGGGAGTTGTATAG
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