mRNA_Ecto-sp13_S_contig13371.2693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13371.2693.1
Unique NamemRNA_Ecto-sp13_S_contig13371.2693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 835 bits (2158), Expect = 1.180e-301
Identity = 491/544 (90.26%), Postives = 502/544 (92.28%), Query Frame = 1
Query:   46 MLRLSLPTAPGCWYLSPLTMVSVWRTICFSLFVVEAFSFVPVSTSSIAFSAPPAAGASGQ-PAYERCSSRGIVARSRRPASRSAWGARMSVDGCFKDVPGDSTACVVERDVG---DNSNTGKGTAGTTGLARGGETGGDDRNGRRLVAIPPLVVAVATGRSLAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQNQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEDSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            MLRLSLP  PGCWYLSPL MVSVWRT+ FSLFVVEA +FVP     IAFSAPPA+  SGQ P +ER SSRGIVARS+ PASRS WG RMS  GC KDVPGD+TACVV RDV    DN N G GTAGTTGL  G E GGD R+GRRL+AIPPL+VAVATGRSLA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ QRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEE SGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRG KSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFS+QKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVN RQSALTLLEWLG EAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL
Sbjct:    1 MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVP----RIAFSAPPASRTSGQQPTHERYSSRGIVARSQLPASRSVWGERMSAAGCSKDVPGDATACVVGRDVCTAVDNRNAGTGTAGTTGLTIGDEIGGDGRSGRRLLAIPPLLVAVATGRSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGRYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVN-RQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.820e-15
Identity = 78/244 (31.97%), Postives = 113/244 (46.31%), Query Frame = 1
Query:  943 GGSSQTAV-VTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQKSG--TYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            GGS    V V  LQ+ L    +  +G +LA L  +++ A+ +S  GLST ++EVCL L+R   DW+      + +A                RA+  FN  A+ ER+K ERETVS       S S      G   +  G  T AV T+++A  G   +  R +  R                     +NS  +   +L  + G+A    GENVL VE+LWTP +P +SLDR+ +   +PEL  L
Sbjct:  192 GGSLGRGVGVVKLQVALNASDRSSRG-ILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRS-----------AERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSD--GVRPEDLGKPTQAVVTIVLALKG--ESLKRFQLERS--------------------INSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.680e-14
Identity = 76/249 (30.52%), Postives = 108/249 (43.37%), Query Frame = 1
Query:  931 RSGRG---GSSQTAVVTTLQLGLYC-DRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            RS RG             LQ+  YC DRQ     +   L  L++TAD +S  GL  L+++ CL  LRS +DWL         A+   S ++G  S+ V   +  +NR  ++ERSKWE E  S T                +S    TY VATL+V     +  P                        E + VN  + A++ L      A     +N++  EVLWTP DP+D +DR+D+   +PEL  L
Sbjct:   44 RSSRGIEQADEAAGAAYCLQVACYCGDRQNS---LYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWL---------AARTTSETKGLFSNDV---ESQYNRIVVKERSKWESEQKSLTR---------------TSAGEATYMVATLVVLLRNGSELP------------------------EVTGVNELREAISQLA-----ADVSIEDNLIAAEVLWTPEDPNDVMDRDDMFLNFPELVTL 233          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A6P0QZA2_9CYAN (DUF1517 domain-containing protein (Fragment) n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QZA2_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-14
Identity = 75/249 (30.12%), Postives = 110/249 (44.18%), Query Frame = 1
Query:  937 GRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTA---PSWGGFSSQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            G    S T  V  +Q+GL  + +  Q D    LD+L+QTAD ++  GL+ L+ E  L+LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  ++   +STA   P+ GG  +Q S   G + V TL+VA  G                            ++   +NS   A   L  LG        + ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:   13 GSSYDSPTVSVAKVQVGLLSEARSLQAD----LDRLAQTADTSTSAGLTQLLQETTLSLLRHPEYWVYAGGETQQTRLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGASTAGTLPAGGGALAQASNEPGEFLVVTLLVAAQGK---------------------------LQLPAINSADDARRALSALGAV----NSDRLMAVEVLWTPQAEGDTLSSDDLLTNYTDLRRI 212          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 1.780e-13
Identity = 80/247 (32.39%), Postives = 110/247 (44.53%), Query Frame = 1
Query:  931 RSGRG--GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            RS RG   S Q      LQ+  YCD +  Q  +   L+K++ +AD +S  GL +L+++ CL +LRS +DWL         A+   S   G   + V  A   +NR  + ERSKWE E  +          TAP           TY VATL+V    L S  P     + G    D RD                 AL  L      AA    +N+L  EVLWTP D +D +DR++L   +PEL ++
Sbjct:   41 RSSRGIEASDQPGAALCLQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWL---------AARTESEIAGLLKNDVDAA---YNRLVVTERSKWEVEQKA-------LKRTAPG--------QPTYMVATLVVL---LRSAQPLKPISQNG----DLRD-----------------ALQNLA-----AAVSVDDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A7U3NLW2_9CYAN (DUF1517 domain-containing protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7U3NLW2_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-13
Identity = 70/245 (28.57%), Postives = 111/245 (45.31%), Query Frame = 1
Query:  949 SSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDR---GFSSSTAPSWGGFSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            S+    VT LQ+GL    +G Q +    LD+++++AD NSP+G + ++ EV L LLR    W+   GGT  VK+ A+E +                 FNR ++ ERSK+  ET+SN  ++          P     S +  G Y + TL+ A  G                            +E   VNS      +L  +GG +    G+ +L +EVLWTP    D+L  +D+  ++P+L+ +
Sbjct:  124 SNPPVSVTRLQVGLLAQARGLQTE----LDQIAESADTNSPQGRAEVLQEVSLALLRHPEYWVYAGGGTQQVKLNAAESQ-----------------FNRLSLAERSKFSEETLSNVNNQLKAALKKEALPPADQLS-EAPGEYLIVTLLAATLGK---------------------------LEIPDVNSADDLRQVLRRIGGIS----GDQLLAIEVLWTPQAQGDTLTSDDILAEYPDLKLV 315          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A8G0W731_9CYAN (DUF1517 domain-containing protein n=7 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A8G0W731_9CYAN)

HSP 1 Score: 80.9 bits (198), Expect = 5.220e-13
Identity = 72/250 (28.80%), Postives = 110/250 (44.00%), Query Frame = 1
Query:  946 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGG-------FSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            GS+    +T LQ+GL    +G Q +    L+++++ AD N+P+G + ++ E  L LLR    W+   GGT   K+ A+E +                 FNR ++ ERSK+  ET+SN  ++   S  A    G       F S+  G Y + TL+ A               G W              +F  +NS       L  +G       GE VL +EVLWTP    D+L  +DL  ++P+LR +
Sbjct:  123 GSNPNVSITRLQVGLLAQARGLQSE----LNQIAEKADTNTPQGRAEILQEASLALLRHPEYWVYAGGGTQQAKLNAAESQ-----------------FNRLSLAERSKFSEETLSNVNNQ-LKSVLAKELPGDIDNPTRFISEGPGEYIIVTLLAA-------------TLGKW--------------DFPQINSTNDLRQALRQVGSLP----GEQVLAIEVLWTPQAEGDTLTSDDLLAEYPDLRLV 319          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: A0A8J7B5L9_9CYAN (DUF1517 domain-containing protein n=1 Tax=Nodosilinea sp. LEGE 07298 TaxID=2777970 RepID=A0A8J7B5L9_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 1.550e-12
Identity = 70/240 (29.17%), Postives = 112/240 (46.67%), Query Frame = 1
Query:  946 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            GS+    V  LQ+GL  + +G Q D    L++L+ TAD  + +GL+ L+ E  L LLR    W          ASE       +K + +  A+++FNR A+  RS++  ET+SN  ++   +       G + Q  G Y +AT++VA  G    P                         +S  + RQ+    L  +G  +    GEN+L VEVLWTP    ++L  ++L  ++PEL+ +
Sbjct:   41 GSNPPVAVAKLQVGLLAEARGLQDD----LNRLATTADTGTSQGLAKLLQETTLALLRHPDYWA-------YAASE-------DKQTRLLSAEQEFNRYALSARSRFSAETLSNVNNQLTQAEIQAKLPGDADQAPGEYILATVVVATQGKLDLPDI-----------------------YSSADLRQA----LSHIGAVS----GENLLAVEVLWTPQQSGETLSGDELIAQYPELKLI 231          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: K9QD55_9NOSO (Uncharacterized protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=K9QD55_9NOSO)

HSP 1 Score: 79.3 bits (194), Expect = 1.780e-12
Identity = 70/251 (27.89%), Postives = 108/251 (43.03%), Query Frame = 1
Query:  949 SSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDR---GFSSSTAPSWGGFS------SQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            S+    VT LQ+GL    +    D+   L+K+++ AD NSP G + ++ E  L LLR    W+   GGT   K+ ++E +                 FNR A+ ERSK+  ET+SN  ++     +    P+ G         S+  G Y + TL+ A  G   TP                            +NS +S   +L  +G       GE +L +EVLWTP    D+L  +DL  ++P+L  +
Sbjct:  125 SNPNVSVTRLQVGLLAQAR----DLQPELNKIAEIADTNSPEGRAAVLQETSLALLRHPEYWVYAGGGTQQAKLSSAESQ-----------------FNRLALAERSKFSEETLSNVNNQLKAALAKEALPASGELDNPTKLISEGPGEYIIVTLLAATLGKLETP---------------------------AINSTESLRQVLRQIGSIP----GEQLLAIEVLWTPQAEGDTLSSDDLLAEYPDLMLV 323          
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Match: UPI0016839E37 (DUF1517 domain-containing protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016839E37)

HSP 1 Score: 78.6 bits (192), Expect = 3.290e-12
Identity = 73/249 (29.32%), Postives = 110/249 (44.18%), Query Frame = 1
Query:  937 GRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNKSSPVSRAKRDFNRAAMRERSKWERETVSNTPD--RGFS-SSTAPSWGGFSSQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNSRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 1665
            G G  S    V  +Q+GL  + +  Q D    LD+++QTAD ++  GL+ ++ E  L LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  +  RG S + T P+ GG  +Q S   G + V TL+VA  G                            ++   +N    A   L  LG  +++     ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:  126 GSGYDSPAVSVAKVQVGLLSEARSLQTD----LDRIAQTADTSTSAGLTQVLQETTLALLRHPEYWVYAGGETQQARLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGTSPAGTLPAAGGALAQTSDSPGEFIVVTLLVAAQGK---------------------------LQLPAINGADDARRALSQLGAVSSD----KLMAVEVLWTPQAQGDTLSSDDLLTNYTDLRRI 325          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13371.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS6_ECTSI1.180e-30190.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEJ7_9STRA1.820e-1531.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0QBA5_9EUKA1.680e-1430.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6P0QZA2_9CYAN2.770e-1430.12DUF1517 domain-containing protein (Fragment) n=1 T... [more]
A0A0M0K0F2_9EUKA1.780e-1332.39Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A7U3NLW2_9CYAN3.700e-1328.57DUF1517 domain-containing protein n=1 Tax=Anabaeno... [more]
A0A8G0W731_9CYAN5.220e-1328.80DUF1517 domain-containing protein n=7 Tax=Sphaeros... [more]
A0A8J7B5L9_9CYAN1.550e-1229.17DUF1517 domain-containing protein n=1 Tax=Nodosili... [more]
K9QD55_9NOSO1.780e-1227.89Uncharacterized protein n=11 Tax=Cyanobacteria Tax... [more]
UPI0016839E373.290e-1229.32DUF1517 domain-containing protein n=1 Tax=Microcol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13371contigEcto-sp13_S_contig13371:1721..4639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score82.8
Seed ortholog evalue5.5e-13
Seed eggNOG ortholog2880.D8LDM2
Model size1668
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-21_001970.1
Cds size1668
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.2844765-CDS-Ecto-sp13_S_contig13371:1720..18861681462714.2844765-CDS-Ecto-sp13_S_contig13371:1720..1886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13371 1721..1886 -
1681462714.3003976-CDS-Ecto-sp13_S_contig13371:2489..28171681462714.3003976-CDS-Ecto-sp13_S_contig13371:2489..2817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13371 2490..2817 -
1681462714.3086793-CDS-Ecto-sp13_S_contig13371:3133..32091681462714.3086793-CDS-Ecto-sp13_S_contig13371:3133..3209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13371 3134..3209 -
1681462714.3169165-CDS-Ecto-sp13_S_contig13371:3541..46391681462714.3169165-CDS-Ecto-sp13_S_contig13371:3541..4639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13371 3542..4639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13371.2693.1prot_Ecto-sp13_S_contig13371.2693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13371 1721..4639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13371.2693.1

>prot_Ecto-sp13_S_contig13371.2693.1 ID=prot_Ecto-sp13_S_contig13371.2693.1|Name=mRNA_Ecto-sp13_S_contig13371.2693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=556bp
MCLPAAVSSACSQAHMLRLSLPTAPGCWYLSPLTMVSVWRTICFSLFVVE
AFSFVPVSTSSIAFSAPPAAGASGQPAYERCSSRGIVARSRRPASRSAWG
ARMSVDGCFKDVPGDSTACVVERDVGDNSNTGKGTAGTTGLARGGETGGD
DRNGRRLVAIPPLVVAVATGRSLAATAAVTGGRIGGGGYSAPAAAERTPS
APPMQQQRQYQPPQQQQQGQNQRPRAGRDIYGSEGSRFHIRFDGGRGGRR
STRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEDS
GQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQ
TADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGNK
SSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSSQK
SGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVN
SRQSALTLLEWLGGEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWP
ELRAL*
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mRNA from alignment at Ecto-sp13_S_contig13371:1721..4639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13371.2693.1 ID=mRNA_Ecto-sp13_S_contig13371.2693.1|Name=mRNA_Ecto-sp13_S_contig13371.2693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2919bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13371:1721..4639- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTTGCCTGCTGCAGTAAGCAGTGCTTGTAGTCAGGCTCACATGCT CAGACTTTCGCTACCCACCGCACCGGGGTGTTGGTACCTTTCCCCGCTGA CAATGGTGTCGGTTTGGAGAACGATCTGTTTTTCTCTCTTTGTTGTCGAG GCGTTCTCATTTGTTCCTGTAAGTACCTCCAGCATAGCATTTTCCGCACC CCCTGCTGCTGGAGCAAGCGGGCAGCCGGCATATGAAAGGTGCAGCTCCC GAGGGATCGTTGCTCGATCACGGCGGCCAGCAAGCAGAAGCGCGTGGGGC GCACGCATGAGTGTTGATGGGTGTTTCAAAGATGTGCCAGGAGATTCAAC AGCGTGCGTTGTGGAACGTGATGTCGGCGACAACAGCAACACTGGCAAGG GCACGGCAGGAACAACGGGGTTGGCGAGGGGCGGTGAGACGGGCGGAGAT GACCGAAATGGGCGTCGTTTGGTGGCGATTCCCCCTCTAGTGGTTGCTGT GGCTACGGGAAGAAGCCTCGCTGCTACTGCTGCTGTGACTGGAGGTAGAA TAGGTGGCGGAGGCTACTCCGCCCCGGCCGCCGCGGAGCGGACGCCAAGT GCCCCTCCAATGCAGCAGCAACGGCAATACCAGCCGCCCCAGCAGCAGCA ACAAGGACAAAACCAGCGGCCAAGGGCTGGCCGAGACATCTACGGCTCCG AGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGACGAGGAGGGAGGCGA TCAACCCGCGCCCGCTTCAACCCCTACGACGGCGATGCGCCTTCCACGTC CATCACTCCCGGCGACGTCGCCATGATCGGCGGGGTCAGCGCCGCCGTGG CGGCCGTTCAGCGTTACAACAGAAAACGCTTTGTCGACGAAGAGGATTCT GGCCAGCGTCCCTCCGCGCCACTGCCGCCGCGTTCTGGCCGGGGAGGGAG CTCGCAAACGGCCGTGGTAACTACGCTACAGTTGGGTTTGTATTGCGACC GCCAGGGGGGACAGGGGGACGTGTTGGCTACGCTGGACAAGCTCTCACAG ACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACCCTTATCAATGAGGT GAGGCAGACAGAGCAGCGCGCAGAACGCCGGTCCAAAGAATGAAGCTTAA CGAGAGATGATGGTTATTTCAAGCCATTGCACTGGTTCGAACTCGTGCGC TCTTGTCCCGTCTTGCACGTTTCCAGCACGTCCAACCCGGCGATCATGCC GCCCTGTACCTGCATGTGTGCGTTGACGAAGACGTTTGTGCGTCATCGTG TGTGGTTTTAGTTGCACTGCTATTGCAACTCCTGCTTGTGGCCCTTGTCG CCGGCGTCATCGTTTGTTAGTTGTAAGCCTTGGGTTTCCCGTAACTTGCA CGCGCATCAAACTTACCCGTTTGTGCACAGGTGTGCCTGACGCTGCTTCG ATCGGGCAGAGATTGGCTTGGGGGCACTGGAAGCGTCAAAATGTACGCCT CGGAAGGTCAGTCGCACATACGTACAACAACAGCTGTTTGCTAGATTGAT GCATTGCTTCACCCCCCGTGTGAGTGCGGCCGAACCATTGCAACAGTAGT TCGAATAGGTTGCCCTTCAAGTTCGCACTTTTGCCGGACCATACTCTCTA CGCTGCTGGCAAGAAACGATGTGCTCCGATTGCACTTTTGTAATCAAGCC CGTGTAACATGACGTAGCGACCATCCTAGGCCTTAACTCTCGTCGATGCC CCGACGAAAAACAGCACAAGTCCAGGTCGAGGTCGTGAAATATTTCGCCC CTTTGTCACACCCACCCCCCAGGCCGTTCGAACAGCAGAGGGAATAAGTC CTCCCCCGTGTCCAGGGCAAAGCGCGACTTCAACCGAGCCGCCATGCGCG AGCGATCAAAGTGGGAGCGGGAGACGGTGTCTAACACCCCCGACCGAGGG TTCAGCAGCAGCACCGCGCCTTCATGGGGGGGGTTCAGCTCCCAGAAGAG CGGAACGTACGCGGTAGCGACGCTGATCGTGGCGTGGTCAGGTTTGAACA GCACCCCTCCTCGGGCTGAGCCGCGAAGAGGCGGCTGGTTCACGCGGGAT AGTCGCGATCGCGACGATGACCGAGGCGTGGAGTTCTCGGTGGTAAACAG GTGCGAGGGTAAAACAGTTCGTGTTTAGGTATCTATGCATATGCATGCAT GTACTTGGAAGATGCCCAAACAGTTCGTTTTTGGTAGAAGATGTAATATA CATATCAGAAGATGCACGTCACAGAACGGCTGCAATGTACCAGTCTCTGA ACACTTTGAACCTTCTTTCACGTAACCGGTTGCAAGCATGCCACATACTG TAGGATGGGTTGTAGTTTTTGCGATTTCTTGGAGCGCGGTGAAGATGATA GACTGTGTTTTTATCACGGCGCTAGGTCCACCTTTTGCTGCGTCGCGTTG GTGGTATCTGCCGACGTGGTTGTGTTTGTTTGGGCAATCACATTCGGAAT GGAGAAAGGAGGGCCTTGTTGAGTCCGAGGTGGTTTCGGTCGGAGTAGAC TTGCACGAGAACGCCGGGTCTTGTGGCTGGCCGTGCCGCCACGACCCTGC GCAGGCACGTCGCGCGGTTTGAGGCTCGTGTCATGGATTGATGCGCGAAC TTTCAGCACGTGCTTGACGCGTTGCATCGCCGTCCCGCCGCAACGACCGA CCCATGCACCGCCGTCTTCTGTTTTGTGTGCGATGCGCAACCAACCAACG AAGCAGGCAGTCCGCGCTGACCCTCCTGGAATGGCTAGGGGGAGAGGCCG CGGAAGGGCGGGGAGAAAACGTGTTGGATGTAGAGGTGCTGTGGACTCCC GCGGACCCAGATGATTCTTTGGACCGGGAAGATTTGGACACCAAATGGCC GGAGCTAAGAGCACTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13371:1721..4639-

>mRNA_Ecto-sp13_S_contig13371.2693.1 ID=mRNA_Ecto-sp13_S_contig13371.2693.1|Name=mRNA_Ecto-sp13_S_contig13371.2693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13371:1721..4639- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTTGCCTGCTGCAGTAAGCAGTGCTTGTAGTCAGGCTCACATGCT
CAGACTTTCGCTACCCACCGCACCGGGGTGTTGGTACCTTTCCCCGCTGA
CAATGGTGTCGGTTTGGAGAACGATCTGTTTTTCTCTCTTTGTTGTCGAG
GCGTTCTCATTTGTTCCTGTAAGTACCTCCAGCATAGCATTTTCCGCACC
CCCTGCTGCTGGAGCAAGCGGGCAGCCGGCATATGAAAGGTGCAGCTCCC
GAGGGATCGTTGCTCGATCACGGCGGCCAGCAAGCAGAAGCGCGTGGGGC
GCACGCATGAGTGTTGATGGGTGTTTCAAAGATGTGCCAGGAGATTCAAC
AGCGTGCGTTGTGGAACGTGATGTCGGCGACAACAGCAACACTGGCAAGG
GCACGGCAGGAACAACGGGGTTGGCGAGGGGCGGTGAGACGGGCGGAGAT
GACCGAAATGGGCGTCGTTTGGTGGCGATTCCCCCTCTAGTGGTTGCTGT
GGCTACGGGAAGAAGCCTCGCTGCTACTGCTGCTGTGACTGGAGGTAGAA
TAGGTGGCGGAGGCTACTCCGCCCCGGCCGCCGCGGAGCGGACGCCAAGT
GCCCCTCCAATGCAGCAGCAACGGCAATACCAGCCGCCCCAGCAGCAGCA
ACAAGGACAAAACCAGCGGCCAAGGGCTGGCCGAGACATCTACGGCTCCG
AGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGACGAGGAGGGAGGCGA
TCAACCCGCGCCCGCTTCAACCCCTACGACGGCGATGCGCCTTCCACGTC
CATCACTCCCGGCGACGTCGCCATGATCGGCGGGGTCAGCGCCGCCGTGG
CGGCCGTTCAGCGTTACAACAGAAAACGCTTTGTCGACGAAGAGGATTCT
GGCCAGCGTCCCTCCGCGCCACTGCCGCCGCGTTCTGGCCGGGGAGGGAG
CTCGCAAACGGCCGTGGTAACTACGCTACAGTTGGGTTTGTATTGCGACC
GCCAGGGGGGACAGGGGGACGTGTTGGCTACGCTGGACAAGCTCTCACAG
ACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACCCTTATCAATGAGGT
GTGCCTGACGCTGCTTCGATCGGGCAGAGATTGGCTTGGGGGCACTGGAA
GCGTCAAAATGTACGCCTCGGAAGGCCGTTCGAACAGCAGAGGGAATAAG
TCCTCCCCCGTGTCCAGGGCAAAGCGCGACTTCAACCGAGCCGCCATGCG
CGAGCGATCAAAGTGGGAGCGGGAGACGGTGTCTAACACCCCCGACCGAG
GGTTCAGCAGCAGCACCGCGCCTTCATGGGGGGGGTTCAGCTCCCAGAAG
AGCGGAACGTACGCGGTAGCGACGCTGATCGTGGCGTGGTCAGGTTTGAA
CAGCACCCCTCCTCGGGCTGAGCCGCGAAGAGGCGGCTGGTTCACGCGGG
ATAGTCGCGATCGCGACGATGACCGAGGCGTGGAGTTCTCGGTGGTAAAC
AGCAGGCAGTCCGCGCTGACCCTCCTGGAATGGCTAGGGGGAGAGGCCGC
GGAAGGGCGGGGAGAAAACGTGTTGGATGTAGAGGTGCTGTGGACTCCCG
CGGACCCAGATGATTCTTTGGACCGGGAAGATTTGGACACCAAATGGCCG
GAGCTAAGAGCACTCTGA
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