mRNA_Ecto-sp13_S_contig13365.2689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13365.2689.1
Unique NamemRNA_Ecto-sp13_S_contig13365.2689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13365.2689.1 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 4.770e-55
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 3 
Query:  177 QDIIGKQSYEVSMNWAHLSGHGHEDELALTSICHQAGEEVIAIRSLHEGGNQMVLTQIVRRPAEGSEVRAKHFFKRVTSKSELRSGGKQQHKRQKGLSSTVVTVRRKK 500
            QDIIGKQSYEVSMNWAHLSGHG EDELALTSICHQAGEEVIAIRSLHEGG+QMVLTQIVRRPAEG EVRAKHFFKRVTSKSELRSGGKQQHK+QKGLSST+VTVRRKK
Sbjct:  328 QDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGEEVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKSELRSGGKQQHKQQKGLSSTIVTVRRKK 435
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BLAST of mRNA_Ecto-sp13_S_contig13365.2689.1 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.700e-6
Identity = 37/116 (31.90%), Postives = 54/116 (46.55%), Query Frame = 3 
Query:  189 GKQSYEVSMNWAHLSGHGHEDELALTSIC---------------------------------------HQAGEEVIAIRSLHEGGNQMVLTQIVRRPAEGSEVRAKHFFKRVTSKS 419
            G   YEV ++W H + +G  + L LTSI                                          A  E+IA+R+L +GG+ +VL QIVR+PA G E RA+H FKR+T+++
Sbjct:  276 GATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARN 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13365.2689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G864_ECTSI4.770e-5595.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHH8_9STRA2.700e-631.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13365contigEcto-sp13_S_contig13365:1977..4028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2052
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.044776-UTR-Ecto-sp13_S_contig13365:1976..21881681462714.044776-UTR-Ecto-sp13_S_contig13365:1976..2188Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13365 1977..2188 +
1681462714.0648723-UTR-Ecto-sp13_S_contig13365:2479..40281681462714.0648723-UTR-Ecto-sp13_S_contig13365:2479..4028Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13365 2480..4028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.0547962-CDS-Ecto-sp13_S_contig13365:2188..24791681462714.0547962-CDS-Ecto-sp13_S_contig13365:2188..2479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13365 2189..2479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13365.2689.1prot_Ecto-sp13_S_contig13365.2689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13365 2189..2479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13365.2689.1

>prot_Ecto-sp13_S_contig13365.2689.1 ID=prot_Ecto-sp13_S_contig13365.2689.1|Name=mRNA_Ecto-sp13_S_contig13365.2689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MNWAHLSGHGHEDELALTSICHQAGEEVIAIRSLHEGGNQMVLTQIVRRP
AEGSEVRAKHFFKRVTSKSELRSGGKQQHKRQKGLSSTVVTVRRKK*
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mRNA from alignment at Ecto-sp13_S_contig13365:1977..4028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13365.2689.1 ID=mRNA_Ecto-sp13_S_contig13365.2689.1|Name=mRNA_Ecto-sp13_S_contig13365.2689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13365:1977..4028+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGGCTACGAGACGAAAGGACCAAGCCTTTCTACTGGCGAGCCTGTTG
ACGCGGTGTATGCTACAAGCAAGAGAACCATGCACACAGAGGCAAACTTG
TCCCGCCTTCCTCGCGTTGTCGACCTCGTTCCTTTGACGGCCCCTTTCGC
TCACCCCTTCCCTGTCCATCGCCTGGCAGGATATAATCGGCAAGCAGAGC
TACGAGGTCTCGATGAACTGGGCGCATCTTTCCGGACACGGTCACGAAGA
TGAGCTAGCGCTGACCAGCATCTGCCACCAAGCGGGCGAAGAGGTCATTG
CGATCCGATCTCTGCACGAAGGGGGGAACCAGATGGTATTGACCCAGATC
GTGCGCCGCCCCGCGGAGGGGTCCGAGGTCCGCGCCAAGCATTTCTTCAA
GCGGGTCACGAGCAAATCGGAGCTCAGGTCCGGCGGCAAGCAGCAGCACA
AGCGGCAGAAGGGCTTGTCGTCGACCGTAGTGACTGTGCGAAGGAAAAAG
TGAGAAAAAAATTTAGCCAGACCAAAAAAATTACCCCCTCGCCCCCCCGA
AACGTTTTTTTAAGGGACGGGGCGGGGAAGGGGCAGGGCGGGGCGTGTTT
TCTTCTTATCTCACCAATGTATTGGGTCGATCGGCTCGATATGTTGTCTA
CTTCGCAAGTTTGACCTCAAGGCTGTTGCCAAGACAGAGGCGTTGCGGAT
GTAATTGTGCATGATTTCCCACCGTCTACGATCGTTACGATAGATGTGTT
GTGCACGGTGTATGGTGGAGACTTGTGATTCTTATTTCCCAGTCCCAGTG
TATGCCCCACTTTCGCGTATCGTGCGGGGTGCCCTTTTCTTTGCTTTCTT
CGGGTGCGTCTTTTGTGCCGATGGTTTCCGTCCGTCGCGACCAGCCGGGT
CAAAATATTGTTGCTGTTTTTGTGGCGTGACTCGGTGCTGGCGGGGTTCT
GACGGTGCGTGTGTTTCCCCCGCCTTGAGCGAGAGATGTTAAGTCATCTT
AGCAGCAGTATGTAGCACTGAAAGAAACCCAGGCGTGCTTGTAATTTACC
GCAATGCAGTTCGGCGGTGCCGTCGAACGCGTTGTTATAGAGGAGGTGTG
GGTTCGTATTTTGGTGACTGTTATCAAGTCGTGAGGTGTATCACCACGTT
TTGCAGTGCTAAGGGCATGTAATGTGTCCCGTGTCCTGGTCTTTTTTTTC
ATGTGTCCCTCGAGGCGGCAGCCGAATTGGTCCAACACGTGGTCGTAGGG
TTCACTCTTGTTCCACGGCTGTTTCGGGGTTTTCCTCCAGGAGAAGATGA
ACATTTAGCGCCGCCACTCGTGGTGGCGACGAACAAACTTAAGTGCAGCT
CCGTTGCGCTGTCGATGGAGGGGTCGGGGGACGTTGTGTGAATAGTGGAG
GTTGGTGGGCCCGACTCTTGACTCTTGGTGTGCATGACGTCAACCAGGCG
TGATACTCGCCCAGCTGCGGTGCTGCCTCTTTTCTCCGTCTGCATCATCT
TTGCCGCACAGTCGGTTCATCGTGGACAGTTTGTGGTGCTTGGCCTTTTG
AGACGGGAGAGGGTCGCGGAGTTCTCCATTTCTCTGTCAAGTGTGGTTTA
GGTGAAAAGACTGCTTCCTGTTTTTTTGCTGAAAACACTGTTGTCGACAT
ACACCATTGATCGGAAATTTCAAAATTTTTGAATCTTTGACCTGTTTTGA
GCTTGTAGGATATTCCCTTGGGAATTTTGTATGCTTCCGATATGCTTCAT
TTTTGGTTCGTTTCGCATGATCTGTGATGATTTTCTGTCTGTTTTTCTCT
TTTCTTTTTCGAAGATGGCAATTACCGTTTTACTGTCTCTCGTATGTCTC
GATTTGTATGTTGTTGACTTGATTTTCGTCTGTTCCATCTGTAATTTTTG
TATTCTCAGCACGATCGTCGAAAGGCAAGAAAAGTGAATCTATTTATCTC
AAGTTTCAAGTTTCTGTCAACCAGATTCGTTTGTTCGTTCCAAACGATGA
TGGCGTGTTCCGTCAGGAGTGTATGGGTCATGACCGGCTCCCTTCTCTCG
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13365:1977..4028+

>mRNA_Ecto-sp13_S_contig13365.2689.1 ID=mRNA_Ecto-sp13_S_contig13365.2689.1|Name=mRNA_Ecto-sp13_S_contig13365.2689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13365:1977..4028+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTGGGCGCATCTTTCCGGACACGGTCACGAAGATGAGCTAGCGCT
GACCAGCATCTGCCACCAAGCGGGCGAAGAGGTCATTGCGATCCGATCTC
TGCACGAAGGGGGGAACCAGATGGTATTGACCCAGATCGTGCGCCGCCCC
GCGGAGGGGTCCGAGGTCCGCGCCAAGCATTTCTTCAAGCGGGTCACGAG
CAAATCGGAGCTCAGGTCCGGCGGCAAGCAGCAGCACAAGCGGCAGAAGG
GCTTGTCGTCGACCGTAGTGACTGTGCGAAGGAAAAAGTGA
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