mRNA_Ecto-sp13_S_contig13358.2682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13358.2682.1
Unique NamemRNA_Ecto-sp13_S_contig13358.2682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13358.2682.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   61 QVGRERENDTWCGATSRNEVNPPESSLTPHPPCPRCSCRVVSPY 192
            +VGRERE+DTWCGATSR EV PP+ +LT +PPCPRCSC   S Y
Sbjct:  138 KVGRERESDTWCGATSRTEVKPPDLNLTAYPPCPRCSCGGESIY 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13358.2682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2J2_ECTSI1.300e-1370.45PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13358contigEcto-sp13_S_contig13358:68..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.0
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7G2J2
Model size193
KEGG koko:K01802
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
Cds size192
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.525692-CDS-Ecto-sp13_S_contig13358:67..2591681462713.525692-CDS-Ecto-sp13_S_contig13358:67..259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13358 68..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13358.2682.1prot_Ecto-sp13_S_contig13358.2682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13358 68..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13358.2682.1

>prot_Ecto-sp13_S_contig13358.2682.1 ID=prot_Ecto-sp13_S_contig13358.2682.1|Name=mRNA_Ecto-sp13_S_contig13358.2682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
VFSPCPSFSHSLYLPCLISVQVGRERENDTWCGATSRNEVNPPESSLTPH
PPCPRCSCRVVSPY
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mRNA from alignment at Ecto-sp13_S_contig13358:68..260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13358.2682.1 ID=mRNA_Ecto-sp13_S_contig13358.2682.1|Name=mRNA_Ecto-sp13_S_contig13358.2682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13358:68..260+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTCTCTCCCTGCCCATCCTTCTCTCACTCCTTGTACCTCCCATGTTT
GATCTCTGTGCAGGTGGGCCGAGAGCGAGAGAACGACACATGGTGCGGTG
CAACATCGAGAAACGAAGTAAATCCCCCGGAGTCAAGCTTGACGCCTCAC
CCTCCTTGCCCTCGTTGTTCGTGTCGTGTCGTGTCTCCATATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13358:68..260+

>mRNA_Ecto-sp13_S_contig13358.2682.1 ID=mRNA_Ecto-sp13_S_contig13358.2682.1|Name=mRNA_Ecto-sp13_S_contig13358.2682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13358:68..260+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTCTCTCCCTGCCCATCCTTCTCTCACTCCTTGTACCTCCCATGTTT
GATCTCTGTGCAGGTGGGCCGAGAGCGAGAGAACGACACATGGTGCGGTG
CAACATCGAGAAACGAAGTAAATCCCCCGGAGTCAAGCTTGACGCCTCAC
CCTCCTTGCCCTCGTTGTTCGTGTCGTGTCGTGTCTCCATAT
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