prot_Ecto-sp13_S_contig1335.2678.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1335.2678.1
Unique Nameprot_Ecto-sp13_S_contig1335.2678.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1335.2678.1 vs. uniprot
Match: D8LID2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.880e-16
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:   15 PSTRAQDSQNGSSYFSTATPWIGARFFALWAQKPKLEITRNVF 57
            PST AQDSQNG SY STATPW+GARF  LWA KPKLEI R +F
Sbjct:   14 PSTLAQDSQNGRSYSSTATPWMGARFMVLWAHKPKLEIARQIF 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1335.2678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID2_ECTSI5.880e-1676.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..69
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.775

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1335contigEcto-sp13_S_contig1335:376..582 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1335.2678.1mRNA_Ecto-sp13_S_contig1335.2678.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1335 376..584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1335.2678.1 ID=prot_Ecto-sp13_S_contig1335.2678.1|Name=mRNA_Ecto-sp13_S_contig1335.2678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
CSLFLVTTIFWVITPSTRAQDSQNGSSYFSTATPWIGARFFALWAQKPKL
EITRNVFLVLRGENGATAK
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