mRNA_Ecto-sp13_S_contig13348.2677.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13348.2677.1
Unique NamemRNA_Ecto-sp13_S_contig13348.2677.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13348.2677.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.970e-63
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 PVREVTLSIWKAMLHLRRAWLAHPSLSRGGSGDNASSVMGGDRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHATAAPSAAPG 327
            PVREVTLSIWKAMLHLRRAWLA PSLSRGGSGDNASSV+GGDRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHAR+V LKA WPVQPQSP AHEHATA+PSAAPG
Sbjct: 1494 PVREVTLSIWKAMLHLRRAWLAQPSLSRGGSGDNASSVVGGDRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHARNVLLKALWPVQPQSPTAHEHATASPSAAPG 1602
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BLAST of mRNA_Ecto-sp13_S_contig13348.2677.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 7.190e-62
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 1 
Query:    1 PVREVTLSIWKAMLHLRRAWLAHPSLSRGGSGDNASSVMGGDRCPPWDDPAALEYWVRAWAAGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHATAAPSA 318
            PVREVTLSIWKAMLHLRRAWLAH SLSRGGSG +ASSV+GGDRCPPWDDPAALEYWVRAW AGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHATA+PSA
Sbjct: 1319 PVREVTLSIWKAMLHLRRAWLAHLSLSRGGSGGDASSVLGGDRCPPWDDPAALEYWVRAWVAGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHATASPSA 1424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13348.2677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIC1_9PHAE5.970e-6393.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K0_ECTSI7.190e-6294.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13348contigEcto-sp13_S_contig13348:1660..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.1249511-CDS-Ecto-sp13_S_contig13348:1659..18831681462713.1249511-CDS-Ecto-sp13_S_contig13348:1659..1883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13348 1660..1883 +
1681462713.1402187-CDS-Ecto-sp13_S_contig13348:2696..28261681462713.1402187-CDS-Ecto-sp13_S_contig13348:2696..2826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13348 2697..2826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13348.2677.1prot_Ecto-sp13_S_contig13348.2677.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13348 1660..2826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13348.2677.1

>prot_Ecto-sp13_S_contig13348.2677.1 ID=prot_Ecto-sp13_S_contig13348.2677.1|Name=mRNA_Ecto-sp13_S_contig13348.2677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
PVREVTLSIWKAMLHLRRAWLAHPSLSRGGSGDNASSVMGGDRCPPWDDP
AALEYWVRAWAAGGPSGPAGDTLHRLHARDVSLKARWPVQPQSPAAHEHA
TAAPSAAPGAAGAATAVA
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mRNA from alignment at Ecto-sp13_S_contig13348:1660..2827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13348.2677.1 ID=mRNA_Ecto-sp13_S_contig13348.2677.1|Name=mRNA_Ecto-sp13_S_contig13348.2677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13348:1660..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTTCGCGAGGTGACCCTGAGCATCTGGAAGGCCATGCTCCATCTCCG
TAGGGCGTGGCTCGCGCACCCTTCGCTGTCCCGCGGGGGAAGCGGCGACA
ACGCCTCCTCCGTCATGGGCGGGGACCGGTGTCCGCCTTGGGACGACCCT
GCGGCGCTGGAGTACTGGGTGCGGGCGTGGGCGGCGGGAGGTCCGTCGGG
TCCAGCTGGGGACACCCTGCACAGGTGTCCTTTTTGGGGCTATTGTCGTT
GTGTCGTTGTCGTTGGTATTGTTGTTGTCGTTGGTGTTGTTGTTTCAGTA
ATTTTTCTTGGGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGG
TGGTGGTGGTGGTGTTGGTGGTGTTTCAGCAATTTCCTTGGGATTGCTGT
CGGCGTGGTGTTGTTTTTCAGTTGTTTTCTTGGGGGGATGTTTGTTGCTG
TTGTTTTTGAGAAACGTGAAACAAGTTCCGTCTCTACCCATCACCGCCGA
TGAAGAGGTCATCCTGAAATTAATTCGTAGATATCTCGTAGTCGCGTTCT
TGGATGTTTGTTTTTCCTCGTCCGTAGTGTGGTGCTCGTGGAGTTGACAT
GGGTGAGGCCGTTTGGCGAGAGCAGCACGGAAAGCGATTACTCTCCCGGT
GCTCGGGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GCTATACCTGCGTACGTCTTTTCATGGTGTATTGTGTGATGCGGTGGGTG
CGACTACCGTCAAGGTGGGGGTAGGGTCGATGCTAAATTCGCCCGAAAAA
GCACGCTGACCGTAGACACGTTGCCCACTCTGAAGATTACACAGTTGAGA
TGTTGTCCGCTCACCGTCTTGCCGACAGCGTTCAACTTCGCGTAAAACAG
GACGTACGTGGTGTTTCTTTTTTCAAACATTGGGCAATCAACAAGTGTCT
GTTCACCCTGTCCTTTTCAAACGAACAAAAAAGTTTCTCCTTTCCCCGAC
TCGCACCGATTCTCGCCCCATCAACACGCCACTCCAGGTTACACGCCCGC
GACGTTTCGCTCAAGGCGCGGTGGCCGGTCCAACCCCAATCGCCTGCGGC
TCACGAGCACGCCACGGCAGCACCCTCTGCCGCCCCGGGCGCCGCCGGCG
CCGCCACCGCGGTAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13348:1660..2827+

>mRNA_Ecto-sp13_S_contig13348.2677.1 ID=mRNA_Ecto-sp13_S_contig13348.2677.1|Name=mRNA_Ecto-sp13_S_contig13348.2677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13348:1660..2827+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTTCGCGAGGTGACCCTGAGCATCTGGAAGGCCATGCTCCATCTCCG
TAGGGCGTGGCTCGCGCACCCTTCGCTGTCCCGCGGGGGAAGCGGCGACA
ACGCCTCCTCCGTCATGGGCGGGGACCGGTGTCCGCCTTGGGACGACCCT
GCGGCGCTGGAGTACTGGGTGCGGGCGTGGGCGGCGGGAGGTCCGTCGGG
TCCAGCTGGGGACACCCTGCACAGGTTACACGCCCGCGACGTTTCGCTCA
AGGCGCGGTGGCCGGTCCAACCCCAATCGCCTGCGGCTCACGAGCACGCC
ACGGCAGCACCCTCTGCCGCCCCGGGCGCCGCCGGCGCCGCCACCGCGGT
AGCA
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