mRNA_Ecto-sp13_S_contig13346.2676.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.380e-37 Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ RQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV
Sbjct: 617 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQLVRQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 692
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A835Z8M1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M1_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.900e-30 Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+ A+ +++N+LVCAPTGAGKTNVAML+LLQ ++H+ G +DR G+KA+YVAPMKALAQEVV+KFSQRLKPLGLV
Sbjct: 6 FEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLV 81
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.350e-24 Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRS-GIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+ AA+ + ENLL+CAPTGAGKTN+AML+LL R+H++GG ++R +KAIY+APMKALAQEVV+KFS+RLK LGLV
Sbjct: 534 FEAAYNSQENLLICAPTGAGKTNIAMLALLALVREHVKGGRVERGPNLKAIYIAPMKALAQEVVAKFSERLKGLGLV 610
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A6A5BKC9_NAEFO (Uncharacterized protein n=3 Tax=Naegleria TaxID=5761 RepID=A0A6A5BKC9_NAEFO) HSP 1 Score: 100 bits (249), Expect = 5.290e-23 Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+++A+KTSENLL+CAPTG GKTNVAML++L + QH RGG + R K IY+APMKALA E+V FS+RL PLG+V
Sbjct: 579 FYSAYKTSENLLICAPTGCGKTNVAMLTILREIGQHFRGGKIRREEFKIIYIAPMKALAAEMVENFSKRLAPLGIV 654
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A7S3M5Q6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5Q6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.820e-22 Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQARQHIRG---GALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+ A+++ EN+LVCAPTGAGKTNVAML++LQ R G +D++ IKA+Y+APMKALAQEVV+KF++RL PLGLV
Sbjct: 525 FPTAYQSFENMLVCAPTGAGKTNVAMLTMLQLINQYRDSRTGVIDKAAIKAVYIAPMKALAQEVVTKFAERLNPLGLV 602
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A5B8MWG2_9CHLO (Sec63 domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWG2_9CHLO) HSP 1 Score: 98.2 bits (243), Expect = 3.420e-22 Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
+H A+ ++ENLLVCAPTGAGKTN+AM+S+L + ++H+ GG LD S K +Y+APMKALA EV + FS+RL+PLG+
Sbjct: 420 FHTAYFSNENLLVCAPTGAGKTNIAMISVLHEVKKHMTGGMLDDSDFKIVYIAPMKALAAEVTATFSKRLEPLGI 494
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A7S0RS89_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RS89_9CHLO) HSP 1 Score: 92.8 bits (229), Expect = 4.220e-22 Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+ AF ++EN+LVCAPTGAGKTN+AM+S+L + Q++R G + ++ K +YVAPMKALA EV S FS+RL PLGLV
Sbjct: 73 FTTAFTSNENMLVCAPTGAGKTNIAMISVLREVGQNMRFGVIQKADFKIVYVAPMKALAAEVTSNFSKRLAPLGLV 148
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: UPI00072DA308 (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=UPI00072DA308) HSP 1 Score: 92.4 bits (228), Expect = 5.280e-22 Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIR-GGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
+ A+ T+ENLL+CAPTGAGKTN+AML++L + RQH++ GG + + K +YVAPMKALA E+ + FS+RL+PLG++
Sbjct: 12 FETAYNTNENLLICAPTGAGKTNIAMLTVLHEIRQHLQPGGVIKKDEFKIVYVAPMKALAAEMTNYFSKRLEPLGII 88
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A4Z2HZR9_9TELE (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2HZR9_9TELE) HSP 1 Score: 96.7 bits (239), Expect = 1.160e-21 Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
Y A+ T+ENLL+CAPTGAGKTN+AML++L + QHI+GG + + K IYVAPMKALA E+ + FS+RL+PLG+
Sbjct: 62 YETAYNTNENLLICAPTGAGKTNIAMLTVLHEIHQHIQGGVIKKDEFKIIYVAPMKALAAEMTNYFSKRLQPLGI 136
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: UPI000C75D4EF (activating signal cointegrator 1 complex subunit 3-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75D4EF) HSP 1 Score: 96.7 bits (239), Expect = 1.190e-21 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 3
Query: 3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQA-RQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
Y AA+KTSEN+LVCAPTGAGKTNVAML ++Q +QHI G + + K +YVAPMKALA E+ + F +RL+PLG+
Sbjct: 485 YDAAYKTSENMLVCAPTGAGKTNVAMLCIVQTIKQHIEAGIIKKDKFKIVYVAPMKALAAEMAAGFGKRLEPLGI 559 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13346.2676.1 >prot_Ecto-sp13_S_contig13346.2676.1 ID=prot_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp FTTPPSRPRKTSWCARLRVRARRTWLCSPFCRQGSTSEEVPSTAAASRPSback to top mRNA from alignment at Ecto-sp13_S_contig13346:4056..4519+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13346.2676.1 ID=mRNA_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:4056..4519+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13346:4056..4519+ >mRNA_Ecto-sp13_S_contig13346.2676.1 ID=mRNA_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:4056..4519+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |