mRNA_Ecto-sp13_S_contig13346.2676.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13346.2676.1
Unique NamemRNA_Ecto-sp13_S_contig13346.2676.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.380e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ  RQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV
Sbjct:  617 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQLVRQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 692          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A835Z8M1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.900e-30
Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            +  A+ +++N+LVCAPTGAGKTNVAML+LLQ  ++H+  G +DR G+KA+YVAPMKALAQEVV+KFSQRLKPLGLV
Sbjct:    6 FEVAYNSAQNMLVCAPTGAGKTNVAMLALLQLVKRHMHNGRVDRHGLKAVYVAPMKALAQEVVAKFSQRLKPLGLV 81          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.350e-24
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQ-ARQHIRGGALDRS-GIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            + AA+ + ENLL+CAPTGAGKTN+AML+LL   R+H++GG ++R   +KAIY+APMKALAQEVV+KFS+RLK LGLV
Sbjct:  534 FEAAYNSQENLLICAPTGAGKTNIAMLALLALVREHVKGGRVERGPNLKAIYIAPMKALAQEVVAKFSERLKGLGLV 610          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A6A5BKC9_NAEFO (Uncharacterized protein n=3 Tax=Naegleria TaxID=5761 RepID=A0A6A5BKC9_NAEFO)

HSP 1 Score: 100 bits (249), Expect = 5.290e-23
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            +++A+KTSENLL+CAPTG GKTNVAML++L +  QH RGG + R   K IY+APMKALA E+V  FS+RL PLG+V
Sbjct:  579 FYSAYKTSENLLICAPTGCGKTNVAMLTILREIGQHFRGGKIRREEFKIIYIAPMKALAAEMVENFSKRLAPLGIV 654          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A7S3M5Q6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5Q6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.820e-22
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQARQHIRG---GALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            +  A+++ EN+LVCAPTGAGKTNVAML++LQ     R    G +D++ IKA+Y+APMKALAQEVV+KF++RL PLGLV
Sbjct:  525 FPTAYQSFENMLVCAPTGAGKTNVAMLTMLQLINQYRDSRTGVIDKAAIKAVYIAPMKALAQEVVTKFAERLNPLGLV 602          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A5B8MWG2_9CHLO (Sec63 domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWG2_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 3.420e-22
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
            +H A+ ++ENLLVCAPTGAGKTN+AM+S+L + ++H+ GG LD S  K +Y+APMKALA EV + FS+RL+PLG+
Sbjct:  420 FHTAYFSNENLLVCAPTGAGKTNIAMISVLHEVKKHMTGGMLDDSDFKIVYIAPMKALAAEVTATFSKRLEPLGI 494          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A7S0RS89_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RS89_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 4.220e-22
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            +  AF ++EN+LVCAPTGAGKTN+AM+S+L +  Q++R G + ++  K +YVAPMKALA EV S FS+RL PLGLV
Sbjct:   73 FTTAFTSNENMLVCAPTGAGKTNIAMISVLREVGQNMRFGVIQKADFKIVYVAPMKALAAEVTSNFSKRLAPLGLV 148          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: UPI00072DA308 (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=UPI00072DA308)

HSP 1 Score: 92.4 bits (228), Expect = 5.280e-22
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIR-GGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGLV 227
            +  A+ T+ENLL+CAPTGAGKTN+AML++L + RQH++ GG + +   K +YVAPMKALA E+ + FS+RL+PLG++
Sbjct:   12 FETAYNTNENLLICAPTGAGKTNIAMLTVLHEIRQHLQPGGVIKKDEFKIVYVAPMKALAAEMTNYFSKRLEPLGII 88          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: A0A4Z2HZR9_9TELE (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2HZR9_9TELE)

HSP 1 Score: 96.7 bits (239), Expect = 1.160e-21
Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLL-QARQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
            Y  A+ T+ENLL+CAPTGAGKTN+AML++L +  QHI+GG + +   K IYVAPMKALA E+ + FS+RL+PLG+
Sbjct:   62 YETAYNTNENLLICAPTGAGKTNIAMLTVLHEIHQHIQGGVIKKDEFKIIYVAPMKALAAEMTNYFSKRLQPLGI 136          
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Match: UPI000C75D4EF (activating signal cointegrator 1 complex subunit 3-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75D4EF)

HSP 1 Score: 96.7 bits (239), Expect = 1.190e-21
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 3
Query:    3 YHAAFKTSENLLVCAPTGAGKTNVAMLSLLQA-RQHIRGGALDRSGIKAIYVAPMKALAQEVVSKFSQRLKPLGL 224
            Y AA+KTSEN+LVCAPTGAGKTNVAML ++Q  +QHI  G + +   K +YVAPMKALA E+ + F +RL+PLG+
Sbjct:  485 YDAAYKTSENMLVCAPTGAGKTNVAMLCIVQTIKQHIEAGIIKKDKFKIVYVAPMKALAAEMAAGFGKRLEPLGI 559          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13346.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.380e-3797.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8M1_9STRA1.900e-3069.74P-loop containing nucleoside triphosphate hydrolas... [more]
W7TU71_9STRA2.350e-2466.23Activating signal cointegrator 1 complex subunit 3... [more]
A0A6A5BKC9_NAEFO5.290e-2363.16Uncharacterized protein n=3 Tax=Naegleria TaxID=57... [more]
A0A7S3M5Q6_9STRA1.820e-2261.54Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A5B8MWG2_9CHLO3.420e-2260.00Sec63 domain-containing protein n=3 Tax=Chloropico... [more]
A0A7S0RS89_9CHLO4.220e-2259.21Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI00072DA3085.280e-2255.84activating signal cointegrator 1 complex subunit 3... [more]
A0A4Z2HZR9_9TELE1.160e-2160.00Activating signal cointegrator 1 complex subunit 3... [more]
UPI000C75D4EF1.190e-2161.33activating signal cointegrator 1 complex subunit 3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13346contigEcto-sp13_S_contig13346:4056..4519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size228
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.9884706-CDS-Ecto-sp13_S_contig13346:4055..41551681462712.9884706-CDS-Ecto-sp13_S_contig13346:4055..4155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 4056..4155 +
1681462713.0057123-CDS-Ecto-sp13_S_contig13346:4392..44571681462713.0057123-CDS-Ecto-sp13_S_contig13346:4392..4457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 4393..4457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.0183015-UTR-Ecto-sp13_S_contig13346:4457..45191681462713.0183015-UTR-Ecto-sp13_S_contig13346:4457..4519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13346 4458..4519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13346.2676.1prot_Ecto-sp13_S_contig13346.2676.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13346 4056..4457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13346.2676.1

>prot_Ecto-sp13_S_contig13346.2676.1 ID=prot_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
FTTPPSRPRKTSWCARLRVRARRTWLCSPFCRQGSTSEEVPSTAAASRPS
TWPP*
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mRNA from alignment at Ecto-sp13_S_contig13346:4056..4519+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13346.2676.1 ID=mRNA_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:4056..4519+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTACCACGCCGCCTTCAAGACCTCGGAAAACCTCCTGGTGTGCGCGCCT ACGGGTGCGGGCAAGACGAACGTGGCTATGCTCTCCCTTCTGCAGGCAAG GTTGCCTGCGAAGAGGTGGCCTCGTCTCTGTTTCACGTACCGCTGCGCTC ATAGCTGGGCGTTGTTCTGACGTGTGGAACACGCGAGGTTTTGCCCGTGT CGTGTTGTGTTTGGGTGTGGTGTTTTGTTTTGCTCGTGTAAAGTTGTCTT GCTCTCGAGCTGATATGTACGCGTTTGTCAAATTATTCCCCGTTTTTTCG TTATGAAATTGGCGTTTTGGTTTTCGCAGCTTGTCAGGCAGCACATCCGA GGAGGTGCCCTCGACCGCAGCGGCATCAAGGCCATCTACGTGGCCCCCAT GAAGGCCCTGGCCCAGGAGGTGGTGTCCAAGTTTTCCCAGAGACTCAAGC CGCTCGGACTGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13346:4056..4519+

>mRNA_Ecto-sp13_S_contig13346.2676.1 ID=mRNA_Ecto-sp13_S_contig13346.2676.1|Name=mRNA_Ecto-sp13_S_contig13346.2676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:4056..4519+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTACCACGCCGCCTTCAAGACCTCGGAAAACCTCCTGGTGTGCGCGCCT
ACGGGTGCGGGCAAGACGAACGTGGCTATGCTCTCCCTTCTGCAGGCAAG
GCAGCACATCCGAGGAGGTGCCCTCGACCGCAGCGGCATCAAGGCCATCT
ACGTGGCCCCCATGA
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