mRNA_Ecto-sp13_S_contig13340.2674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13340.2674.1
Unique NamemRNA_Ecto-sp13_S_contig13340.2674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13340.2674.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 1.270e-140
Identity = 214/220 (97.27%), Postives = 217/220 (98.64%), Query Frame = 3 
Query:    3 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENFAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELYEFVTGLAGSNEAAGSIADTLMEANPNRAIFLLHQWPDVVSALE 662
            VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIEN AMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQ+EAICAG+WELYEFVTGLAGSN+AAGSIADTLMEANP RAIFLLHQWPDVV ALE
Sbjct:  196 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENLAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQNEAICAGMWELYEFVTGLAGSNDAAGSIADTLMEANPKRAIFLLHQWPDVVLALE 415
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BLAST of mRNA_Ecto-sp13_S_contig13340.2674.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 6.870e-136
Identity = 218/220 (99.09%), Postives = 220/220 (100.00%), Query Frame = 3 
Query:    3 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENFAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELYEFVTGLAGSNEAAGSIADTLMEANPNRAIFLLHQWPDVVSALE 662
            VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIE+FAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELYEFVTGLAGSN+AAGSIADTLMEANPNRAIFLLHQWPDVVSALE
Sbjct:  681 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIESFAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELYEFVTGLAGSNDAAGSIADTLMEANPNRAIFLLHQWPDVVSALE 900
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BLAST of mRNA_Ecto-sp13_S_contig13340.2674.1 vs. uniprot
Match: A0A6H5KYC9_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.930e-6
Identity = 50/197 (25.38%), Postives = 92/197 (46.70%), Query Frame = 3 
Query:    3 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNS--------------------VLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENFAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELY 533
            +VDAMR+ED++ +RE   L+YF+++L  P +                    +  LLP FL+SG +Q +V++A DF +Q   +  D+  +    K E+  A +++      A+G        ++ D +    A A+ L+       L   Q +FL    + +D +       L  + F L++ LC+++ +   LW L+
Sbjct:  446 IVDAMREEDILSNRERLQLRYFLINLRLPTADPNARNANFAPEAQEGEWGPLFTLLPEFLMSGAVQRAVQSASDFGKQ---IADDVAEI----KREESLAMHQSRNNVARASGV-------SVNDRE----ANASKLRA-----KLAYHQAKFLLS--NGNDQVSSEMVRQLSATAFILMDALCRNDDLSRSLWNLH 617
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BLAST of mRNA_Ecto-sp13_S_contig13340.2674.1 vs. uniprot
Match: D7FPK0_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK0_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.450e-5
Identity = 49/197 (24.87%), Postives = 92/197 (46.70%), Query Frame = 3 
Query:    3 VVDAMRKEDVIGDREMAGLKYFVVSLHRPNS--------------------VLALLPGFLVSGKIQGSVKTARDFARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENFAMPDHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFLSVFFLVEHLCQSEAICAGLWELY 533
            +VDAMR+ED++ +RE   L+YF+++L  P +                    +  LLP FL+SG +Q +V++A DF ++   +  D+  +    K E+  A +++      A+G        ++ D      A A+ L+       L   Q +FL  + + +D +       L  + F L++ LC+++ +   LW L+
Sbjct:  647 IVDAMREEDILSNRERLQLRYFLINLRLPTADPNARNVNFAPEAQEGEWGPLFTLLPEFLMSGAVQRAVQSASDFGKK---IADDVAEI----KREESLAMHQSRNNVVRASGV-------SVNDRQ----ANASRLRA-----KLAYHQAKFL--LTNGNDQVSSEMVRQLSATAFILMDALCRNDDLSRSLWNLH 818
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13340.2674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5X7_9PHAE1.270e-14097.27GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN7_ECTSI6.870e-13699.091,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KYC9_9PHAE3.930e-625.381,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
D7FPK0_ECTSI4.450e-524.871,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13340contigEcto-sp13_S_contig13340:1786..4636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score425.2
Seed ortholog evalue1.8e-116
Seed eggNOG ortholog2880.D7FXN7
Model size662
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog description1,3-beta-glucan synthase, family GT48
Ec32 orthologEc-28_002440.1
Cds size648
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13340.2674.1prot_Ecto-sp13_S_contig13340.2674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13340 1800..4636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.8855946-UTR-Ecto-sp13_S_contig13340:1785..17991681462712.8855946-UTR-Ecto-sp13_S_contig13340:1785..1799Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13340 1786..1799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.8977253-CDS-Ecto-sp13_S_contig13340:1799..18791681462712.8977253-CDS-Ecto-sp13_S_contig13340:1799..1879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13340 1800..1879 +
1681462712.9078095-CDS-Ecto-sp13_S_contig13340:2878..30281681462712.9078095-CDS-Ecto-sp13_S_contig13340:2878..3028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13340 2879..3028 +
1681462712.9251838-CDS-Ecto-sp13_S_contig13340:3258..34501681462712.9251838-CDS-Ecto-sp13_S_contig13340:3258..3450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13340 3259..3450 +
1681462712.9371343-CDS-Ecto-sp13_S_contig13340:3760..39131681462712.9371343-CDS-Ecto-sp13_S_contig13340:3760..3913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13340 3761..3913 +
1681462712.948363-CDS-Ecto-sp13_S_contig13340:4563..46361681462712.948363-CDS-Ecto-sp13_S_contig13340:4563..4636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13340 4564..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13340.2674.1

>prot_Ecto-sp13_S_contig13340.2674.1 ID=prot_Ecto-sp13_S_contig13340.2674.1|Name=mRNA_Ecto-sp13_S_contig13340.2674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MRKEDVIGDREMAGLKYFVVSLHRPNSVLALLPGFLVSGKIQGSVKTARD
FARQQDELIKDLVAVDAWGKGEDKGARYEAAERRKPATGFFDMIENFAMP
DHDEYGVARAADLKVVKQMRTLRLEQKRFLRGMLSVSDAIREVAFLHLFL
SVFFLVEHLCQSEAICAGLWELYEFVTGLAGSNEAAGSIADTLMEANPNR
AIFLLHQWPDVVSALE
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mRNA from alignment at Ecto-sp13_S_contig13340:1786..4636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13340.2674.1 ID=mRNA_Ecto-sp13_S_contig13340.2674.1|Name=mRNA_Ecto-sp13_S_contig13340.2674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13340:1786..4636+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGTGGACGCAATGCGCAAGGAGGACGTCATCGGTGACCGAGAGATG
GCCGGCCTCAAGTACTTCGTCGTGTCCCTGCACCGCCCCAACAGGTCAGA
GCGATAATACTTGACAGGTTCCCGGCCCCACGCGGCGAGTTCATTCCATT
CCCGCGCCTCTCTCTCTCTCCGGGAGCATTTTTCGACATCTACTACGTGC
GTTAAGCACGTCCCGCGGTCGGTTGGCCATCGTGATAACTTGGGCAGTTC
GGGAGCAATCGCGAATGTTTTTCGTTCTTTCAGATAATGATCATGATCCT
GTGCACGCACGGCAGTAGGTGCAGCTTATGGGAGTCGGCGGCGGCAGCTT
TGAGACGCCCATCAACTCCTCTTCTTCTTGATGTCTTCGTCTTATTCGCG
CCACGACTGAGGTGTAGCGGCGTGTCATGCTTGTGTTGCCTTTCCGTGAT
GACGACGGCAACACCAGCAACAATATTGGCAACAGCAGCAACAAGGGAAG
CTCAGCAGCAACAACAGCAGCAACAACATGACCAACTTCGCGTCGACAGC
GACGACGGCTACGACAACGATGCAACAAACATATATTGCTCCGCATCCAC
AACGTCAACAACTCCAATAGCAACACCCGTATGCTCCGCACCCGTGACAG
CAACAACAATAGCAATTGTTCCGCACCCACGACGTCAATAGCAGCAGTAG
TACTATTTTTTTCTACGCACCCACGACAGCAGTAACAACGATAACAACAA
CACCTATTGCTCGGCATCCACGGCGTCAGCAATAGCAACATCTATTGCTG
CACCCACGAACGTCAATAGCAGCAATAACAGCATTTTTTCCTCCGCACCC
ACGACAGTATCAACGATCAACGCCTATTGCTCCGCTTCCACGACAACCAA
AACCTGTTGCTCCGCACCCACGACGTCAAGAGCAACAGCAACACGTATTG
CTCCGCGCCCACGACAGTAACAACAACCGTTTGCTCCACATCCACGACGT
CAGCAACAGCAACAGCAACACCTGTTTCTCCGCGCAAACGACAATATCAA
CCATAACAACAACCATTACTGTTGTGTCGCTCCGCGCCTGCAGCGTCCTG
GCGTTGCTGCCTGGTTTCCTTGTGTCGGGCAAGATCCAGGGCTCCGTCAA
GACGGCGAGGGACTTCGCCAGGCAGCAGGACGAGCTGATCAAGGACCTCG
TCGCCGTGGATGCGTGGGGGAAAGGCGAAGACAAAGGAGCACGGTGCGTG
TGTACTGTTCCAGGTACAAGAGGTGGTGTGCGTGCGGGAGTAGCGTGGTA
TTGTTTGCATTTTGATGCCCGAAGTGTCTCAGAGAGCAAGCGCGCTTGAT
GACATTGTTTTTCGCGCCGAGGTGGTGTAGTTGGAAGGATCGCCGTTGGA
CGTGAATCTGCCATCCGTCTTAACGAACGACAAAAACAACCACTGCAAAA
ACAACAACAACAACAACGACCAGGTACGAGGCGGCTGAGAGACGCAAGCC
CGCTACCGGTTTTTTCGACATGATCGAGAACTTCGCCATGCCAGACCACG
ACGAATACGGCGTCGCTCGGGCGGCCGACCTCAAGGTCGTGAAGCAGATG
CGGACGCTGCGGCTGGAGCAGAAGAGATTCCTCCGCGGCATGCTGTCGGT
GTCTGACGCCATCAGGTGGAGTGGGTCTGATGTTCGTTGACTTTTCACCG
CTGTTCCAGCCGAGTAAACCGGCACTATACCGGCCACTGTCACTCTCAGC
CGATCAGGGCTCCCAACCGTAGCCGTCGTCGGTGGTGGTGTTGCCGTATT
CTGTTGTGTTTGTTGTTATCGTTGCTGCTGAAAACGCCCGCGAAATCGTG
TTGAGTGTGCCGGACGCTTGTCAAGCGGGGGATGGCGTTGCCTTGATGTG
TACCGCTTTGTGTGTGTTTTCCGTCGCGATCTGTCTGCCTTTCTTGATGC
TGCTGCTCGCGTGCTTGGCCTGCAGGGAGGTGGCGTTTCTCCACCTCTTT
CTCAGCGTCTTCTTCCTAGTGGAGCACCTCTGCCAGAGCGAGGCCATCTG
CGCGGGATTGTGGGAGCTGTACGAGTTCGTTACGGGACTGGCCGGTTCGA
ACGAGGCGGCCGGCTCCATAGCCGACACGTGAGGGTCTTGCGCGCTGCTT
GCTGCAATATTCCCGCCAATGCGGGTGTCTCGGGGGGGATGTCAGGCTCG
TATTCGTGAAAGTCGCGTTAGCGGATGATCCCGTCACCGACGATGTTAGC
GTGACTGCGTTGCACTTTCTGTTTCGGCTCGCAGGACGCGACCGGCTCCA
TATCCGACACGTAAGAATCTTGTGCGCGCTGCTTGCTTGTAACATTCCTA
CCAAAGCGGATATCGGGATGTCACATTCGTGCTCATGGAGATCGCGTTAG
CTAAAGTGATCCCGTCACCGAAGTCAAAAGCGCGACTTTGCAGAGGACTT
TCGTTTTTGGTGAAGGAGACAGGATCCTGCTGAGAGGTGGTACGAATTAT
ATTGTCTCGCCTCTGTCGTTTATACGTAGACACATACAGCACCCTCCGTT
TCTTGCCTGGCATTCTTTTTCTTACTATCACACGACGAATCCATATCTTC
CCCATAGATTAAATAATCTAGGATCAGTTTGCAATGAATCCATGGCGTTG
GCGGCGGCACTACCTGTGCTTGTACATTTTTCATTCCCGTACGATGGTAC
ATAGATAACTGGTACCCTTTTACTGTCTTGCCTAATATGTTTCTTTCCCG
ATACATTTCGTGCCCCCGGGTCCTGCAGGCTCATGGAAGCCAACCCGAAC
CGGGCGATCTTCCTCCTCCACCAGTGGCCGGACGTGGTCTCGGCCCTCGA
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13340:1786..4636+

>mRNA_Ecto-sp13_S_contig13340.2674.1 ID=mRNA_Ecto-sp13_S_contig13340.2674.1|Name=mRNA_Ecto-sp13_S_contig13340.2674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13340:1786..4636+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAAGGAGGACGTCATCGGTGACCGAGAGATGGCCGGCCTCAAGTA
CTTCGTCGTGTCCCTGCACCGCCCCAACAGCGTCCTGGCGTTGCTGCCTG
GTTTCCTTGTGTCGGGCAAGATCCAGGGCTCCGTCAAGACGGCGAGGGAC
TTCGCCAGGCAGCAGGACGAGCTGATCAAGGACCTCGTCGCCGTGGATGC
GTGGGGGAAAGGCGAAGACAAAGGAGCACGGTACGAGGCGGCTGAGAGAC
GCAAGCCCGCTACCGGTTTTTTCGACATGATCGAGAACTTCGCCATGCCA
GACCACGACGAATACGGCGTCGCTCGGGCGGCCGACCTCAAGGTCGTGAA
GCAGATGCGGACGCTGCGGCTGGAGCAGAAGAGATTCCTCCGCGGCATGC
TGTCGGTGTCTGACGCCATCAGGGAGGTGGCGTTTCTCCACCTCTTTCTC
AGCGTCTTCTTCCTAGTGGAGCACCTCTGCCAGAGCGAGGCCATCTGCGC
GGGATTGTGGGAGCTGTACGAGTTCGTTACGGGACTGGCCGGTTCGAACG
AGGCGGCCGGCTCCATAGCCGACACGCTCATGGAAGCCAACCCGAACCGG
GCGATCTTCCTCCTCCACCAGTGGCCGGACGTGGTCTCGGCCCTCGAG
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