prot_Ecto-sp13_S_contig13337.2670.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13337.2670.1
Unique Nameprot_Ecto-sp13_S_contig13337.2670.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length135
Homology
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A6H5JSR8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR8_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 3.390e-84
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0
Query:    1 RDGGSGSVSAAALPSLGVVAGAIAPKSSNSHVQGAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALLHE 134
            RDGGSGS+SAAALPSLGVVAGA APK SNSHVQ AIHKEVQYSREG SKGNVPANTLAVFRFVKEAF IPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALL+E
Sbjct:   45 RDGGSGSLSAAALPSLGVVAGATAPKPSNSHVQEAIHKEVQYSREGNSKGNVPANTLAVFRFVKEAFVIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALLYE 178          
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: D7G087_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G087_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 7.380e-40
Identity = 75/79 (94.94%), Postives = 75/79 (94.94%), Query Frame = 0
Query:    1 RDGGSGSVSAAALPSLGVVAGAIAPKSS-NSHVQGAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHK 78
            RDGGSGSVSAAALPSLGVVAGA APKSS NSHVQ AIHKEVQYSREGKSKGNVPANTLAVFRFVKEAF IPNNFEKDHK
Sbjct:   45 RDGGSGSVSAAALPSLGVVAGATAPKSSSNSHVQEAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFVIPNNFEKDHK 123          
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A7R9U4S1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4S1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   36 IHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCP 128
            ++  ++Y R G  +  + A  +A F  V+  ++IP +FEKD K+GP+SG+S E RV++A+   +L  R + AK  VK+C+ C + GH  R CP
Sbjct:   72 LYANLEYRRRGDKE--LSATEIAAFELVETHYEIPKDFEKDSKYGPISGLSFEERVLAAYQQDKL--RPKSAK--VKICVACASVGHVKRRCP 158          
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A7S3PQN4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQN4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.060e-9
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   57 LAVFRFVKEAFDIPNNFEKDH---KFGPLSGVSHELRVVSAFMAGQLEAR--------TEEAKGGVKMCLECGAKGHFPRHCPLA 130
            +AVF+FVK+ F+IP++F+      K+G  SG+ +E RVV A+ A +L+ +        TEE      MC ECG K HFP  CP A
Sbjct:   93 VAVFKFVKDNFEIPDDFDNSSSSLKYGARSGLCYEERVVRAYRAKKLQLKKSSDLNLDTEEWM----MCSECGKKNHFPIRCPKA 173          
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A5D6XYE0_9STRA (CCHC-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYE0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.920e-6
Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 0
Query:   40 VQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVK--MCLECGAKGHFPRHCP 128
            V+Y+R G+ +  V    L +  +     ++P +FE++H+FGP SG++ E R+V A++   LE +    K      +C+ C   GH  R CP
Sbjct:   80 VKYARRGEGE-RVSKELLTITHY-----EVPADFERNHRFGPHSGLTFEKRLVRAYLLQLLEPKGPVRKRQAPEIICITCAKLGHSHRECP 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSR8_9PHAE3.390e-8494.78CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G087_ECTSI7.380e-4094.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U4S1_9STRA1.170e-1338.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3PQN4_9STRA1.060e-942.35Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A5D6XYE0_9STRA3.920e-631.87CCHC-type domain-containing protein n=1 Tax=Pythiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 114..128
score: 9.307
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 110..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13337contigEcto-sp13_S_contig13337:1927..3640 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13337.2670.1mRNA_Ecto-sp13_S_contig13337.2670.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13337 1228..3640 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13337.2670.1 ID=prot_Ecto-sp13_S_contig13337.2670.1|Name=mRNA_Ecto-sp13_S_contig13337.2670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
RDGGSGSVSAAALPSLGVVAGAIAPKSSNSHVQGAIHKEVQYSREGKSKG
NVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQL
EARTEEAKGGVKMCLECGAKGHFPRHCPLALLHE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf