mRNA_Ecto-sp13_S_contig13337.2670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13337.2670.1
Unique NamemRNA_Ecto-sp13_S_contig13337.2670.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A6H5JSR8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR8_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.470e-80
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 RDGGSGSVSAAALPSLGVVAGAIAPKSSNSHVQGAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALLHE 402
            RDGGSGS+SAAALPSLGVVAGA APK SNSHVQ AIHKEVQYSREG SKGNVPANTLAVFRFVKEAF IPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALL+E
Sbjct:   45 RDGGSGSLSAAALPSLGVVAGATAPKPSNSHVQEAIHKEVQYSREGNSKGNVPANTLAVFRFVKEAFVIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCPLALLYE 178
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BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: D7G087_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G087_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 8.030e-37
Identity = 75/79 (94.94%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:    1 RDGGSGSVSAAALPSLGVVAGAIAPKSS-NSHVQGAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHK 234
            RDGGSGSVSAAALPSLGVVAGA APKSS NSHVQ AIHKEVQYSREGKSKGNVPANTLAVFRFVKEAF IPNNFEKDHK
Sbjct:   45 RDGGSGSVSAAALPSLGVVAGATAPKSSSNSHVQEAIHKEVQYSREGKSKGNVPANTLAVFRFVKEAFVIPNNFEKDHK 123
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BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A7R9U4S1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4S1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.850e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:  106 IHKEVQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVKMCLECGAKGHFPRHCP 384
            ++  ++Y R G  +  + A  +A F  V+  ++IP +FEKD K+GP+SG+S E RV++A+   +L  R + AK  VK+C+ C + GH  R CP
Sbjct:   72 LYANLEYRRRGDKE--LSATEIAAFELVETHYEIPKDFEKDSKYGPISGLSFEERVLAAYQQDKL--RPKSAK--VKICVACASVGHVKRRCP 158
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BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A7S3PQN4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQN4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.440e-8
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  169 LAVFRFVKEAFDIPNNFEKDH---KFGPLSGVSHELRVVSAFMAGQLEAR--------TEEAKGGVKMCLECGAKGHFPRHCPLA 390
            +AVF+FVK+ F+IP++F+      K+G  SG+ +E RVV A+ A +L+ +        TEE      MC ECG K HFP  CP A
Sbjct:   93 VAVFKFVKDNFEIPDDFDNSSSSLKYGARSGLCYEERVVRAYRAKKLQLKKSSDLNLDTEEWM----MCSECGKKNHFPIRCPKA 173
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BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Match: A0A5D6XYE0_9STRA (CCHC-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYE0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.140e-5
Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:  118 VQYSREGKSKGNVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQLEARTEEAKGGVK--MCLECGAKGHFPRHCP 384
            V+Y+R G+ +  V    L +  +     ++P +FE++H+FGP SG++ E R+V A++   LE +    K      +C+ C   GH  R CP
Sbjct:   80 VKYARRGEGE-RVSKELLTITHY-----EVPADFERNHRFGPHSGLTFEKRLVRAYLLQLLEPKGPVRKRQAPEIICITCAKLGHSHRECP 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13337.2670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSR8_9PHAE2.470e-8094.78CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G087_ECTSI8.030e-3794.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U4S1_9STRA9.850e-1238.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3PQN4_9STRA4.440e-842.35Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A5D6XYE0_9STRA8.140e-531.87CCHC-type domain-containing protein n=1 Tax=Pythiu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13337contigEcto-sp13_S_contig13337:1228..3640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score68.2
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog2850.Phatr37492
Model size1104
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.zinc finger
EggNOG OGs2E177@1,2S8JC@2759,2XDTZ@2836
Cds size405
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.5234785-UTR-Ecto-sp13_S_contig13337:1227..19261681462712.5234785-UTR-Ecto-sp13_S_contig13337:1227..1926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13337 1228..1926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.5355742-CDS-Ecto-sp13_S_contig13337:1926..20971681462712.5355742-CDS-Ecto-sp13_S_contig13337:1926..2097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13337 1927..2097 -
1681462712.544649-CDS-Ecto-sp13_S_contig13337:2565..26851681462712.544649-CDS-Ecto-sp13_S_contig13337:2565..2685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13337 2566..2685 -
1681462712.5563278-CDS-Ecto-sp13_S_contig13337:3526..36401681462712.5563278-CDS-Ecto-sp13_S_contig13337:3526..3640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13337 3527..3640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13337.2670.1prot_Ecto-sp13_S_contig13337.2670.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13337 1927..3640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13337.2670.1

>prot_Ecto-sp13_S_contig13337.2670.1 ID=prot_Ecto-sp13_S_contig13337.2670.1|Name=mRNA_Ecto-sp13_S_contig13337.2670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
RDGGSGSVSAAALPSLGVVAGAIAPKSSNSHVQGAIHKEVQYSREGKSKG
NVPANTLAVFRFVKEAFDIPNNFEKDHKFGPLSGVSHELRVVSAFMAGQL
EARTEEAKGGVKMCLECGAKGHFPRHCPLALLHE*
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mRNA from alignment at Ecto-sp13_S_contig13337:1228..3640-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13337.2670.1 ID=mRNA_Ecto-sp13_S_contig13337.2670.1|Name=mRNA_Ecto-sp13_S_contig13337.2670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13337:1228..3640- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGATGGAGGAAGCGGATCGGTGTCGGCAGCGGCATTGCCATCGCTGGG
TGTGGTCGCGGGGGCTATCGCTCCCAAGTCTTCGAACTCCCACGTCCAGG
GGGCTATTCACAAGGTGGTGATTTCGTTGTTTATGTCTTTGCCGTGCCGC
ATCTCATTATTCATCTCGTTTACCGTATTATTTTTTACACGGATTGCCCG
CCAGGGTACACTCACTCGAAGGTAGAAGAACACGAAAGCATCGCCGATTG
AATATTTCTAGTGATTTTATTCGACAAGACATTCCAAATTTTCGATTGTT
TGTCAGTGGGAGGTGCTCTATCAAGCGCGTGCAGGAGACGAATGGAGTTG
GGCGGCGGGGGGGAGCATCTCGACACCGAGTTTCGTTTTCCATCAGGAAT
CAGCGTTACAAATGTGTACCAGTAGGAAAACTGCGGGCACCCAATTCAAT
TCATCCCACGGGTTGCGGCAACGGCGCGGGCTTCCACTGTTTAGCCCAGG
AACCCTAGGATGCAACTAGGTTAAGACTTTGAAGATGCAGGATTATTTTA
TCTGTTTTTCGTCGCTACGTGCTTTGTGGTGAATTACACTGGCCTCGACG
GTGCTTGCAAACCTTTAAGGTTAATGTTTGCCCGGTTCCGGGAACAGGCG
ACGAGATTCAGCCGTTTTCAGATCGACGGGTGCTTGGCTTAATTTGTCAC
TCGAAGTTGAAAATCAGGTCCACCCGCCAGATGAAACGCATCACAACACT
CAACGATGGAAGGTAGCAGCAGATACTCAGATTATTTTGAATGGGAGTGT
TTCTGTTGTAAAACCCCTGAAGACCCTGACCTTCGTGGGAGGATCCATTT
GCTTGTGACAACCGTTGTGCTGAAAACTTCCGGCTTTGGTCACGTCCATC
CTCCTGATCTTGCTTGCTCTTGTTCCTCATACACATGAATTTACGCATGC
TGCAGGAGGTGCAGTATTCCCGAGAAGGGAAGAGCAAGGGGAACGTGCCG
GCGAACACGCTTGCCGTCTTCCGGTTCGTCAAAGAGGCCTTCGACATCCC
AAACAACTTCGAGAAGGACCACAAGGTGATCCCTACAATCGTGTCTGTGT
GTGTGTCATTTTTTTCGTGTGTGGATTGTTTTTTTCAAAAAAACGTAATT
TCTTTTGTTCTTTTTCTTTCTTTCGTTGATTGTTTTGTGTGTTTGAAAAT
TAAGTTGCGAAATTCACGTCGCAATTGCATGACCCTACGTGCATGCAACG
GAAAACGCCTGGTGCCCTAATGTTGGGAGGCGTAGCGGTGACAGTGATCA
ACCTGCCTGTGTTTGGACTCATTTTTTTTTTTCGTTTTCTCTCATCTTTC
CGTACGCCTTTGCCTCTCGCGCTTCTGTTTGATGTTCTTTGCAATAGCAA
TAGTAAAGGTTCGCTACTACTTTTGTTCATGCACCTTCTCGCATCCGTCA
ATCCCGCTCCCGAAGTAATAAAGTGATTCGCTGTGCCCCGCTACCCCCTA
CTCCCCACCCTTCATGGCCCCCCATTCGGTCCCGGTGCGATAGTTCGGTC
CTCTTAGCGGCGTGTCTCACGAGCTGCGAGTGGTATCGGCGTTCATGGCG
GGACAGCTAGAGGCTCGCACGGAGGAGGCGAAAGGCGGGGTCAAGATGTG
CCTGGAGTGCGGGGCAAAGGGGCACTTCCCTCGCCACTGCCCGCTAGCCC
TGCTGCACGAGTGAACCGATATCGTCTTAGCTACGACGTGCTTGTGCGTT
ATGTATGTCCTTGTTTGCTTGTCTTGAGTCGGTGTGTCTGCTGAACCTTG
TGAGTGGTTGACGCGACGCTTCTGACCATAGGGAGCCTGTTGAATTGCGA
GACCCGCGATGAAACGCGGCATGTCCGTGCGATGACCATGGGATCCTGAG
TGTGCGATCTTCGTGCGGGGGGTGAGTCGGTGGTTTGGTCCGTGAAGGGT
GTTTTTTTGTTGAGTAAACATAATCTTACAGAAATTCTATCCGTTCGGGA
TATAACCCAGTCGAAACGGATGTACTGAAGTCTTAATAGTGAGTGGAGTG
TTTTTTATGTATGGGTGGCTTTGCCACACCCCCTTGGAGGTTAGCCTTCG
GTGACGTTGATGTTGCTTCAAGGACGGTTTCTTGTGATGATGTTAGAGAG
GGATATCCTTTCACTGCCGAAGATGTTGTTCGATTGCTTGGGAGAAGATG
GAGTGGAAAGGAGAGAGAAGAGAGAAGGCTGGTAGTGTTATGTGAAGCTT
GATCGTTGAAGGTCGGAGCAAGCCACTCGGGCAAGGGCTAGCTCCACAGC
CGACATGAACATCTAGAATAGGAAGATAACGCCACTTCTCGGCAAAGTGC
TTCTCTTACCCGAATCACGTAGCTGTAATTGCTGAGCTTTGTTGTGGTAC
CATACCCCGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13337:1228..3640-

>mRNA_Ecto-sp13_S_contig13337.2670.1 ID=mRNA_Ecto-sp13_S_contig13337.2670.1|Name=mRNA_Ecto-sp13_S_contig13337.2670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13337:1228..3640- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGATGGAGGAAGCGGATCGGTGTCGGCAGCGGCATTGCCATCGCTGGG
TGTGGTCGCGGGGGCTATCGCTCCCAAGTCTTCGAACTCCCACGTCCAGG
GGGCTATTCACAAGGAGGTGCAGTATTCCCGAGAAGGGAAGAGCAAGGGG
AACGTGCCGGCGAACACGCTTGCCGTCTTCCGGTTCGTCAAAGAGGCCTT
CGACATCCCAAACAACTTCGAGAAGGACCACAAGTTCGGTCCTCTTAGCG
GCGTGTCTCACGAGCTGCGAGTGGTATCGGCGTTCATGGCGGGACAGCTA
GAGGCTCGCACGGAGGAGGCGAAAGGCGGGGTCAAGATGTGCCTGGAGTG
CGGGGCAAAGGGGCACTTCCCTCGCCACTGCCCGCTAGCCCTGCTGCACG
AGTGA
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