mRNA_Ecto-sp13_S_contig13334.2669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13334.2669.1
Unique NamemRNA_Ecto-sp13_S_contig13334.2669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13334.2669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13334contigEcto-sp13_S_contig13334:1713..4458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons6
Cds size684
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13334.2669.1prot_Ecto-sp13_S_contig13334.2669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13334 1797..4458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.434299-UTR-Ecto-sp13_S_contig13334:1712..17961681462712.434299-UTR-Ecto-sp13_S_contig13334:1712..1796Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13334 1713..1796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.4451041-CDS-Ecto-sp13_S_contig13334:1796..19821681462712.4451041-CDS-Ecto-sp13_S_contig13334:1796..1982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 1797..1982 -
1681462712.456714-CDS-Ecto-sp13_S_contig13334:2812..29061681462712.456714-CDS-Ecto-sp13_S_contig13334:2812..2906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 2813..2906 -
1681462712.464752-CDS-Ecto-sp13_S_contig13334:3153..32521681462712.464752-CDS-Ecto-sp13_S_contig13334:3153..3252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 3154..3252 -
1681462712.4726992-CDS-Ecto-sp13_S_contig13334:3605..37381681462712.4726992-CDS-Ecto-sp13_S_contig13334:3605..3738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 3606..3738 -
1681462712.4818366-CDS-Ecto-sp13_S_contig13334:3983..40511681462712.4818366-CDS-Ecto-sp13_S_contig13334:3983..4051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 3984..4051 -
1681462712.4905317-CDS-Ecto-sp13_S_contig13334:4354..44581681462712.4905317-CDS-Ecto-sp13_S_contig13334:4354..4458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13334 4355..4458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13334.2669.1

>prot_Ecto-sp13_S_contig13334.2669.1 ID=prot_Ecto-sp13_S_contig13334.2669.1|Name=mRNA_Ecto-sp13_S_contig13334.2669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
EQLVTCKRSSSGLTALSEDVLVQICEYIHEKDIVRLSTSSPAAFDERLWQ
QLHLVRYGSPNNSCLEGLPFAHSSKLQLQSDFPMHHSRLFAIRCHHRSIR
SMVLPHGSCCSRLMFAAEALTREDRLLRGNEETSRLDRADLRRKRHSTRA
SVMRELAVAKRASTEERMALVDVRSAVERHSYAPGCRPKAPHTPSSWREG
HGVRGKGRASGASRILSPTLTGVFDGV*
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mRNA from alignment at Ecto-sp13_S_contig13334:1713..4458-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13334.2669.1 ID=mRNA_Ecto-sp13_S_contig13334.2669.1|Name=mRNA_Ecto-sp13_S_contig13334.2669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13334:1713..4458- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTCGTGACCTGCAAAAGGAGCTCGTCGGGGCTGACGGCTCTTTC
GGAAGACGTCTTGGTCCAAATATGCGAGTACATTCATGAGAAGGATATAG
TCCGGTGAGGAACAGAAAAAAAAAAGGACAGCTCAAGGTTCTTGATTCGC
CTTTTTGAGGCTTGCGTATTCGTGCATTTGTTGGAGCCATCCGGAGGCTG
GCAAGACTTAGTTGTAGCGGCCGTGTCCTTGTTGATGTGCCGCCTGCTTG
GCATCACGGAAAGCAGACACTTTCTTCGTTCCGCGGCAATCTTGCAAAGA
TTGTTCGCTGTGGGTAAACCTCTGAAGAGCGCCCGCCGCATGGTTTGATC
ACCGGCATCGGCTCCAACCCCCGCTTCCAACGCGTGCACGACGTTTCCGT
CCCGTAGGCTGTCGACATCCTCTCCAGCAGCGTTCGACGAGAGACTGTGG
CAGCAGCTACATCTTGTTCGCTACGGTAATGAGCGGTTACAAAAGGGGCG
TGTGAAGTCCCCGCACATGTGCAAAAGGGGTAGCAGACAAGGTCGCAAGC
TGCAGAGGTCGCCAAGTTCCCGGAGCTTGTAGCTGGCCTTACGCTAACCT
GTTCGTCATCCCCCCTGATACAGCAACACGACCGCGCCGCGCCCACCATC
AAGAGACGCAATTCTTTGCACATACCCCGCATGAACGCTTCACTGCCTGA
CTGGCTCATAATGCCCGCAGGTTCACCGAACAACTCCTGCCTGGAGGGTC
TTCCGTTCGCACACTCTTCCAAGCTTCAGCTCCAGAGCGACTTCCCCATG
CACCACTCGAGGCTATTCGCCATCCGGTGCCATCATCGGAGCATCCGTTC
CATGTGAGGGTCGAGAATAACCGCAGCAAGTCAGCAACACGTCATGATGG
AAATTCAACGACACAGCCTGGATCGACGCGTTTTCAGAGGAAATATTCTT
TGGCGGTGATCGCGGTTGCCGCAACAGGCGGCTGAATTGGACGATCGATA
GCCCGGAGCGTTCACTACTGGCGAGAGAATTCTGCAACAAAGAGCTTACC
CTAACCACGAGATTAAACTCGACGCTTCACAACCTCTTGGTTTGGCAGAA
ACTCGCAACCTCCTCATGACAGCCGTACGGAAAACTTTCTAGGTACTCTT
GTCGGGCTTAACCTTCCTTCCCTTTGGTTGTCCTTACCATGGTGCGCCCT
CCACAGGGTTCTGCCGCACGGCAGCTGCTGCTCTCGGTTGATGTTCGCAG
CCGAAGCGCTGACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACA
AGCCGGTGAGAAACATGCCAGATCATCTGTTGCAAACCTGTGAGCAACGT
TGTTCTGTTTTCCCACCATGTCGTCATATTCGTTTTCGACCCCGCATTCC
GAGGACTTCAACGTCTGGAGATGACGTTGTGTCTCCATCCAACCCGCTTC
CGTTTTCTTTCAATCTTCCTTGAGCCTTTATTTTGCTTCGTACCAAAGCG
CTGGGTACGATTCCTAAATCATTTTTTTCTGGCCGGTGACGGGGAGATGC
AGGTTGGACAGAGCGGACCTTCGTCGGAAGCGGCATTCCACCCGTGCCTC
TGTGATGCGAGAGCTAGCCGTTGCGAAGCGGGCAAGCACGGAAGAGGTAC
GAGGTGCAGTATACTCTGGGTCAGTGAAAATTCCGGCATTTACTTTCTCT
TTTGTCGCACCGGCCTGGTTGTCGTGGCTCAGCTCTCTGTTGAAAGACAG
TCGGTCCCGTCAAAGGACCGTGAGTGAGTCGATGATCAAACTTTTTACCA
CCTTCAGGTTTTAGATGAGTGGCAACCTTGTTGGACCTCTCGTGGAATGT
ATTGTCGCTACACCTGAAGAACGCCAAACAACAGAGAACAGAGTCAACGG
TTCCAACAGTCCAAATCTGTTTTGAAATCCCTGGAGCCTCTTTCCGCGCG
AAACGAGAGAGGAGTGTTTACCCAAATCGTCGGAATAGCCACCCCCATGG
GAAGACATTCTTTGCTCTTCGAGGGTACTCTGTCCTGCAGAAGCATCGAA
TCCGTGTCGACTCGTGGACCGGACTATCAGAGTTGTCAGTTTCACTCTGG
ACCCCCCCCAGGTACTACAAACACGGGTTGGGTGAGATACGTCCGCTGCG
GCGGAAGGTACCTCCTTCTCCAAACTTGACAGCTTCAGTTGGCCTTCTAC
TAACCCGAGCGCTGCTGTCAGATGTAATGAACACACACACGTCGTTATCG
TCGCTTGTGCCCTGTACTGACTGAAACTGGCGACGTCACGTCGAATCGAG
AACCTCATCCATCATGCTTCCATCCTTTCCGCCCAACTTCGTGGCCTTTC
TCTTCGAGCTGCACTGCGCATTTGCCTTCTTTGCGCAGCTACTAACGACT
AACGACCAGGATCGATCTGATTGGTTGGCATCGTGAATGACCCGCCCTCT
GCTCGCCCGATCTCCGCCACGTGCAGCGCATGGCGCTGGTCGACGTGCGA
TCCGCGGTGGAACGACACTCCTACGCCCCCGGTTGTCGCCCGAAAGCCCC
CCACACTCCATCATCGTGGCGAGAAGGCCACGGGGTCAGGGGCAAGGGGA
GAGCGAGCGGGGCGTCGAGGATACTATCCCCGACTCTCACCGGCGTGTTT
GACGGGGTATAGACTCACCCCCGCGCGCTGTGTAGACAGAGCAATGAACC
GCACGATGATTATTGTGAGGACCCAAACGAAAGAGGGGCATGGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13334:1713..4458-

>mRNA_Ecto-sp13_S_contig13334.2669.1 ID=mRNA_Ecto-sp13_S_contig13334.2669.1|Name=mRNA_Ecto-sp13_S_contig13334.2669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13334:1713..4458- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTCGTGACCTGCAAAAGGAGCTCGTCGGGGCTGACGGCTCTTTC
GGAAGACGTCTTGGTCCAAATATGCGAGTACATTCATGAGAAGGATATAG
TCCGGCTGTCGACATCCTCTCCAGCAGCGTTCGACGAGAGACTGTGGCAG
CAGCTACATCTTGTTCGCTACGGTTCACCGAACAACTCCTGCCTGGAGGG
TCTTCCGTTCGCACACTCTTCCAAGCTTCAGCTCCAGAGCGACTTCCCCA
TGCACCACTCGAGGCTATTCGCCATCCGGTGCCATCATCGGAGCATCCGT
TCCATGGTTCTGCCGCACGGCAGCTGCTGCTCTCGGTTGATGTTCGCAGC
CGAAGCGCTGACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACAA
GCCGGTTGGACAGAGCGGACCTTCGTCGGAAGCGGCATTCCACCCGTGCC
TCTGTGATGCGAGAGCTAGCCGTTGCGAAGCGGGCAAGCACGGAAGAGCG
CATGGCGCTGGTCGACGTGCGATCCGCGGTGGAACGACACTCCTACGCCC
CCGGTTGTCGCCCGAAAGCCCCCCACACTCCATCATCGTGGCGAGAAGGC
CACGGGGTCAGGGGCAAGGGGAGAGCGAGCGGGGCGTCGAGGATACTATC
CCCGACTCTCACCGGCGTGTTTGACGGGGTATAG
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