mRNA_Ecto-sp13_S_contig13332.2668.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13332.2668.1
Unique NamemRNA_Ecto-sp13_S_contig13332.2668.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13332.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13332contigEcto-sp13_S_contig13332:3107..3428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_000800.2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.3815157-CDS-Ecto-sp13_S_contig13332:3108..33361681462712.3815157-CDS-Ecto-sp13_S_contig13332:3108..3336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13332 3109..3336 -
1681462712.39677-CDS-Ecto-sp13_S_contig13332:3362..34281681462712.39677-CDS-Ecto-sp13_S_contig13332:3362..3428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13332 3363..3428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13332.2668.1prot_Ecto-sp13_S_contig13332.2668.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13332 3109..3428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13332.2668.1

>prot_Ecto-sp13_S_contig13332.2668.1 ID=prot_Ecto-sp13_S_contig13332.2668.1|Name=mRNA_Ecto-sp13_S_contig13332.2668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
CKSLYSRGWVKLSPSLNFLNTLAEEIIHDKTTPLTRDRSKKKKLATTASH
ENMPTAPSIPYRHSCFRYHNPTSNDAPLPLEPSPPLLQPAAAPSWAYA
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mRNA from alignment at Ecto-sp13_S_contig13332:3107..3428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13332.2668.1 ID=mRNA_Ecto-sp13_S_contig13332.2668.1|Name=mRNA_Ecto-sp13_S_contig13332.2668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13332:3107..3428- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAAATCTCTCTACTCAAGAGGCTGGGTCAAGCTCTCCCCATCTCTCAA
CTTCTTGAATACACTTGTTTGCCTCGAATTTGTTGTCTTCAGGCAGAAGA
AATAATACACGACAAAACTACACCCTTGACACGAGACAGGAGCAAAAAGA
AAAAACTGGCCACAACGGCATCGCACGAAAACATGCCGACCGCGCCCTCC
ATCCCTTACCGACACTCGTGTTTCCGCTACCATAATCCTACTTCTAATGA
TGCACCACTTCCCCTCGAGCCTTCCCCTCCCTTACTGCAACCCGCGGCTG
CTCCATCGTGGGCGTACGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13332:3107..3428-

>mRNA_Ecto-sp13_S_contig13332.2668.1 ID=mRNA_Ecto-sp13_S_contig13332.2668.1|Name=mRNA_Ecto-sp13_S_contig13332.2668.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13332:3107..3428- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAAATCTCTCTACTCAAGAGGCTGGGTCAAGCTCTCCCCATCTCTCAA
CTTCTTGAATACACTTGCAGAAGAAATAATACACGACAAAACTACACCCT
TGACACGAGACAGGAGCAAAAAGAAAAAACTGGCCACAACGGCATCGCAC
GAAAACATGCCGACCGCGCCCTCCATCCCTTACCGACACTCGTGTTTCCG
CTACCATAATCCTACTTCTAATGATGCACCACTTCCCCTCGAGCCTTCCC
CTCCCTTACTGCAACCCGCGGCTGCTCCATCGTGGGCGTACGCG
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